HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-DEC-03 1RVK TITLE CRYSTAL STRUCTURE OF ENOLASE AGR_L_2751 FROM AGROBACTERIUM TUMEFACIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOMERASE/LACTONIZING ENZYME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THE HYPOTHETICAL PROTEIN MR.GI-17937161; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58 / ATCC 33970; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENOLASE SUPERFAMILY, MR.GI-17937161, NYSGXRC, TARGET T1522, KEYWDS 2 STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX KEYWDS 3 RESEARCH CENTER FOR STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR A.A.FEDOROV,E.V.FEDOROV,R.THIRUMURUHAN,W.ZENCHECK,C.MILLIKIN, AUTHOR 2 J.A.GERLT,S.C.ALMO,S.K.BURLEY,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 03-FEB-21 1RVK 1 AUTHOR REMARK SEQADV LINK REVDAT 4 13-JUL-11 1RVK 1 VERSN REVDAT 3 24-FEB-09 1RVK 1 VERSN REVDAT 2 25-JAN-05 1RVK 1 AUTHOR KEYWDS REMARK REVDAT 1 23-DEC-03 1RVK 0 JRNL AUTH A.A.FEDOROV,E.V.FEDOROV,R.THIRUMURUHAN,W.ZENCHECK, JRNL AUTH 2 C.MILLIKIN,J.A.GERLT,S.C.ALMO JRNL TITL EVOLUTION OF ENZYMATIC ACTIVITES IN THE ENOLASE SUPERFAMILY: JRNL TITL 2 1.7 A CRYSTAL STRUCTURE OF THE HYPOTHETICAL PROTEIN JRNL TITL 3 MR.GI-17937161 FROM AGROBACTERIUM TUMEFACIENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 50443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2545 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4476 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 258 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3009 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 383 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM SIGMAA (A) : 0.42 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.08 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.004 REMARK 3 BOND ANGLES (DEGREES) : 1.320 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.800 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.660 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.670 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.570 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.560 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 49.82 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : CIS_PEPTIDE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RVK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000021070. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97911, 0.97934, 0.97166 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50443 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CHLORIDE, HEPES, PH 7.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 59.36650 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 59.36650 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.59950 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 59.36650 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 59.36650 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.59950 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 59.36650 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 59.36650 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.59950 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 59.36650 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 59.36650 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.59950 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 59.36650 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.36650 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.59950 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 59.36650 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 59.36650 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.59950 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 59.36650 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 59.36650 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.59950 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 59.36650 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 59.36650 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.59950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 33250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 93230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -115.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 118.73300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 118.73300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 118.73300 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 118.73300 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 118.73300 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 133.19900 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 118.73300 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 133.19900 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 133.19900 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 118.73300 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 118.73300 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 133.19900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 382 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 250 O HOH A 405 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 65 -60.88 -122.09 REMARK 500 PRO A 176 15.65 -68.61 REMARK 500 SER A 178 -62.48 -27.83 REMARK 500 PHE A 208 121.57 -38.66 REMARK 500 GLU A 233 62.82 36.95 REMARK 500 LYS A 263 -136.50 50.73 REMARK 500 THR A 312 160.30 80.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 999 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 206 OD1 REMARK 620 2 GLU A 232 OE2 88.9 REMARK 620 3 GLU A 258 OE1 170.8 82.4 REMARK 620 4 HOH A 419 O 85.2 96.3 92.9 REMARK 620 5 HOH A 436 O 83.7 88.1 98.8 168.0 REMARK 620 6 HOH A 455 O 97.1 170.8 91.9 91.2 85.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 999 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-T1522 RELATED DB: TARGETDB DBREF 1RVK A 1 382 UNP Q8UAC1 Q8UAC1_AGRT5 1 382 SEQADV 1RVK MSE A 1 UNP Q8UAC1 MET 1 MODIFIED RESIDUE SEQADV 1RVK MSE A 37 UNP Q8UAC1 MET 37 MODIFIED RESIDUE SEQADV 1RVK MSE A 138 UNP Q8UAC1 MET 138 MODIFIED RESIDUE SEQADV 1RVK MSE A 174 UNP Q8UAC1 MET 174 MODIFIED RESIDUE SEQADV 1RVK MSE A 185 UNP Q8UAC1 MET 185 MODIFIED RESIDUE SEQADV 1RVK MSE A 204 UNP Q8UAC1 MET 204 MODIFIED RESIDUE SEQADV 1RVK MSE A 235 UNP Q8UAC1 MET 235 MODIFIED RESIDUE SEQADV 1RVK MSE A 296 UNP Q8UAC1 MET 296 MODIFIED RESIDUE SEQADV 1RVK MSE A 304 UNP Q8UAC1 MET 304 MODIFIED RESIDUE SEQADV 1RVK MSE A 314 UNP Q8UAC1 MET 314 MODIFIED RESIDUE SEQADV 1RVK MSE A 353 UNP Q8UAC1 MET 353 MODIFIED RESIDUE SEQRES 1 A 382 MSE ILE ILE THR ASP VAL GLU VAL ARG VAL PHE ARG THR SEQRES 2 A 382 THR THR ARG ARG HIS SER ASP SER ALA GLY HIS ALA HIS SEQRES 3 A 382 PRO GLY PRO ALA HIS GLN VAL GLU GLN ALA MSE LEU THR SEQRES 4 A 382 VAL ARG THR GLU ASP GLY GLN GLU GLY HIS SER PHE THR SEQRES 5 A 382 ALA PRO GLU ILE VAL ARG PRO HIS VAL ILE GLU LYS PHE SEQRES 6 A 382 VAL LYS LYS VAL LEU ILE GLY GLU ASP HIS ARG ASP ARG SEQRES 7 A 382 GLU ARG LEU TRP GLN ASP LEU ALA HIS TRP GLN ARG GLY SEQRES 8 A 382 SER ALA ALA GLN LEU THR ASP ARG THR LEU ALA VAL VAL SEQRES 9 A 382 ASP CYS ALA LEU TRP ASP LEU ALA GLY ARG SER LEU GLY SEQRES 10 A 382 GLN PRO VAL TYR LYS LEU ILE GLY GLY TYR ARG ASP LYS SEQRES 11 A 382 VAL LEU ALA TYR GLY SER ILE MSE CYS GLY ASP GLU LEU SEQRES 12 A 382 GLU GLY GLY LEU ALA THR PRO GLU ASP TYR GLY ARG PHE SEQRES 13 A 382 ALA GLU THR LEU VAL LYS ARG GLY TYR LYS GLY ILE LYS SEQRES 14 A 382 LEU HIS THR TRP MSE PRO PRO VAL SER TRP ALA PRO ASP SEQRES 15 A 382 VAL LYS MSE ASP LEU LYS ALA CYS ALA ALA VAL ARG GLU SEQRES 16 A 382 ALA VAL GLY PRO ASP ILE ARG LEU MSE ILE ASP ALA PHE SEQRES 17 A 382 HIS TRP TYR SER ARG THR ASP ALA LEU ALA LEU GLY ARG SEQRES 18 A 382 GLY LEU GLU LYS LEU GLY PHE ASP TRP ILE GLU GLU PRO SEQRES 19 A 382 MSE ASP GLU GLN SER LEU SER SER TYR LYS TRP LEU SER SEQRES 20 A 382 ASP ASN LEU ASP ILE PRO VAL VAL GLY PRO GLU SER ALA SEQRES 21 A 382 ALA GLY LYS HIS TRP HIS ARG ALA GLU TRP ILE LYS ALA SEQRES 22 A 382 GLY ALA CYS ASP ILE LEU ARG THR GLY VAL ASN ASP VAL SEQRES 23 A 382 GLY GLY ILE THR PRO ALA LEU LYS THR MSE HIS LEU ALA SEQRES 24 A 382 GLU ALA PHE GLY MSE GLU CYS GLU VAL HIS GLY ASN THR SEQRES 25 A 382 ALA MSE ASN LEU HIS VAL VAL ALA ALA THR LYS ASN CYS SEQRES 26 A 382 ARG TRP TYR GLU ARG GLY LEU LEU HIS PRO PHE LEU GLU SEQRES 27 A 382 TYR ASP ASP GLY HIS ASP TYR LEU LYS SER LEU SER ASP SEQRES 28 A 382 PRO MSE ASP ARG ASP GLY PHE VAL HIS VAL PRO ASP ARG SEQRES 29 A 382 PRO GLY LEU GLY GLU ASP ILE ASP PHE THR PHE ILE ASP SEQRES 30 A 382 ASN ASN ARG VAL ARG MODRES 1RVK MSE A 1 MET SELENOMETHIONINE MODRES 1RVK MSE A 37 MET SELENOMETHIONINE MODRES 1RVK MSE A 138 MET SELENOMETHIONINE MODRES 1RVK MSE A 174 MET SELENOMETHIONINE MODRES 1RVK MSE A 185 MET SELENOMETHIONINE MODRES 1RVK MSE A 204 MET SELENOMETHIONINE MODRES 1RVK MSE A 235 MET SELENOMETHIONINE MODRES 1RVK MSE A 296 MET SELENOMETHIONINE MODRES 1RVK MSE A 304 MET SELENOMETHIONINE MODRES 1RVK MSE A 314 MET SELENOMETHIONINE MODRES 1RVK MSE A 353 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 37 8 HET MSE A 138 8 HET MSE A 174 8 HET MSE A 185 8 HET MSE A 204 8 HET MSE A 235 8 HET MSE A 296 8 HET MSE A 304 8 HET MSE A 314 8 HET MSE A 353 8 HET MG A 999 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 MG MG 2+ FORMUL 3 HOH *383(H2 O) HELIX 1 1 ALA A 53 VAL A 57 5 5 HELIX 2 2 ARG A 58 PHE A 65 1 8 HELIX 3 3 PHE A 65 ILE A 71 1 7 HELIX 4 4 ASP A 77 ARG A 90 1 14 HELIX 5 5 THR A 97 GLY A 117 1 21 HELIX 6 6 PRO A 119 GLY A 125 1 7 HELIX 7 7 THR A 149 GLY A 164 1 16 HELIX 8 8 ASP A 182 GLY A 198 1 17 HELIX 9 9 SER A 212 LYS A 225 1 14 HELIX 10 10 SER A 239 LEU A 250 1 12 HELIX 11 11 GLY A 262 ALA A 273 1 12 HELIX 12 12 GLY A 282 GLY A 287 1 6 HELIX 13 13 GLY A 288 PHE A 302 1 15 HELIX 14 14 THR A 312 THR A 322 1 11 HELIX 15 15 GLU A 338 GLY A 342 5 5 HELIX 16 16 ASP A 372 ASN A 379 1 8 SHEET 1 A 3 ILE A 3 SER A 19 0 SHEET 2 A 3 ALA A 25 THR A 42 -1 O GLN A 35 N PHE A 11 SHEET 3 A 3 GLU A 47 THR A 52 -1 O SER A 50 N LEU A 38 SHEET 1 B 8 CYS A 306 VAL A 308 0 SHEET 2 B 8 ILE A 278 THR A 281 1 N LEU A 279 O GLU A 307 SHEET 3 B 8 VAL A 254 GLY A 256 1 N GLY A 256 O ILE A 278 SHEET 4 B 8 TRP A 230 GLU A 232 1 N ILE A 231 O VAL A 255 SHEET 5 B 8 ARG A 202 ASP A 206 1 N ILE A 205 O GLU A 232 SHEET 6 B 8 GLY A 167 HIS A 171 1 N LEU A 170 O ASP A 206 SHEET 7 B 8 LYS A 130 ILE A 137 1 N GLY A 135 O LYS A 169 SHEET 8 B 8 TYR A 328 LEU A 333 1 O LEU A 333 N SER A 136 SHEET 1 C 8 CYS A 306 VAL A 308 0 SHEET 2 C 8 ILE A 278 THR A 281 1 N LEU A 279 O GLU A 307 SHEET 3 C 8 VAL A 254 GLY A 256 1 N GLY A 256 O ILE A 278 SHEET 4 C 8 TRP A 230 GLU A 232 1 N ILE A 231 O VAL A 255 SHEET 5 C 8 ARG A 202 ASP A 206 1 N ILE A 205 O GLU A 232 SHEET 6 C 8 GLY A 167 HIS A 171 1 N LEU A 170 O ASP A 206 SHEET 7 C 8 LYS A 130 ILE A 137 1 N GLY A 135 O LYS A 169 SHEET 8 C 8 PHE A 358 HIS A 360 -1 O VAL A 359 N VAL A 131 LINK C MSE A 1 N ILE A 2 1555 1555 1.33 LINK C ALA A 36 N MSE A 37 1555 1555 1.33 LINK C MSE A 37 N LEU A 38 1555 1555 1.33 LINK C ILE A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N CYS A 139 1555 1555 1.33 LINK C TRP A 173 N MSE A 174 1555 1555 1.33 LINK C MSE A 174 N PRO A 175 1555 1555 1.34 LINK C LYS A 184 N MSE A 185 1555 1555 1.33 LINK C MSE A 185 N ASP A 186 1555 1555 1.33 LINK C LEU A 203 N MSE A 204 1555 1555 1.33 LINK C MSE A 204 N ILE A 205 1555 1555 1.33 LINK C PRO A 234 N MSE A 235 1555 1555 1.33 LINK C MSE A 235 N ASP A 236 1555 1555 1.33 LINK C THR A 295 N MSE A 296 1555 1555 1.33 LINK C MSE A 296 N HIS A 297 1555 1555 1.33 LINK C GLY A 303 N MSE A 304 1555 1555 1.33 LINK C MSE A 304 N GLU A 305 1555 1555 1.33 LINK C ALA A 313 N MSE A 314 1555 1555 1.33 LINK C MSE A 314 N ASN A 315 1555 1555 1.33 LINK C PRO A 352 N MSE A 353 1555 1555 1.33 LINK C MSE A 353 N ASP A 354 1555 1555 1.33 LINK OD1 ASP A 206 MG MG A 999 1555 1555 2.10 LINK OE2 GLU A 232 MG MG A 999 1555 1555 2.17 LINK OE1 GLU A 258 MG MG A 999 1555 1555 2.10 LINK O HOH A 419 MG MG A 999 1555 1555 2.23 LINK O HOH A 436 MG MG A 999 1555 1555 2.29 LINK O HOH A 455 MG MG A 999 1555 1555 2.29 CISPEP 1 PRO A 175 PRO A 176 0 1.51 CISPEP 2 ALA A 180 PRO A 181 0 -0.62 CISPEP 3 GLY A 256 PRO A 257 0 -0.75 CISPEP 4 GLY A 331 LEU A 332 0 0.87 SITE 1 AC1 6 ASP A 206 GLU A 232 GLU A 258 HOH A 419 SITE 2 AC1 6 HOH A 436 HOH A 455 CRYST1 118.733 118.733 133.199 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008422 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008422 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007508 0.00000 HETATM 1 N MSE A 1 111.101 50.543 57.369 1.00 22.21 N HETATM 2 CA MSE A 1 109.881 50.483 58.230 1.00 22.95 C HETATM 3 C MSE A 1 108.957 49.357 57.784 1.00 21.84 C HETATM 4 O MSE A 1 107.856 49.194 58.315 1.00 18.11 O HETATM 5 CB MSE A 1 109.126 51.816 58.177 1.00 28.69 C HETATM 6 CG MSE A 1 108.515 52.164 56.824 1.00 34.07 C HETATM 7 SE MSE A 1 109.806 52.382 55.390 1.00 38.77 SE HETATM 8 CE MSE A 1 108.782 51.638 53.939 1.00 39.44 C