HEADER LYASE 16-DEC-03 1RWH TITLE CRYSTAL STRUCTURE OF ARTHROBACTER AURESCENS CHONDROITIN AC LYASE IN TITLE 2 COMPLEX WITH CHONDROITIN TETRASACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHONDROITIN AC LYASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.2.5 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTHROBACTER AURESCENS; SOURCE 3 ORGANISM_TAXID: 43663 KEYWDS CHONDROITINASE, CHONDROITIN, CHONDROITIN LYASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR V.V.LUNIN,Y.LI,H.MIYAZONO,M.KYOGASHIMA,A.W.BELL,M.CYGLER REVDAT 7 23-AUG-23 1RWH 1 HETSYN REVDAT 6 29-JUL-20 1RWH 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 31-JAN-18 1RWH 1 REMARK REVDAT 4 09-MAY-12 1RWH 1 COMPND REVDAT 3 13-JUL-11 1RWH 1 VERSN REVDAT 2 24-FEB-09 1RWH 1 VERSN REVDAT 1 13-APR-04 1RWH 0 JRNL AUTH V.V.LUNIN,Y.LI,R.J.LINHARDT,H.MIYAZONO,M.KYOGASHIMA, JRNL AUTH 2 T.KANEKO,A.W.BELL,M.CYGLER JRNL TITL HIGH-RESOLUTION CRYSTAL STRUCTURE OF ARTHROBACTER AURESCENS JRNL TITL 2 CHONDROITIN AC LYASE: AN ENZYME-SUBSTRATE COMPLEX DEFINES JRNL TITL 3 THE CATALYTIC MECHANISM JRNL REF J.MOL.BIOL. V. 337 367 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15003453 JRNL DOI 10.1016/J.JMB.2003.12.071 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.08 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 187327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.114 REMARK 3 R VALUE (WORKING SET) : 0.113 REMARK 3 FREE R VALUE : 0.142 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 0.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1122 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8215 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5601 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 1107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : -0.44000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.033 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.034 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.020 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.477 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.984 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.976 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5853 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 5271 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7981 ; 2.010 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12214 ; 3.275 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 756 ; 6.077 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 236 ;33.517 ;23.559 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 875 ;10.869 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;12.978 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 916 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6608 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1194 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1127 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5899 ; 0.292 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3009 ; 0.108 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 676 ; 0.207 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.150 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 5 ; 0.211 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 26 ; 0.350 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 51 ; 0.234 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3734 ; 2.043 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5957 ; 2.765 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2119 ; 3.390 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2023 ; 4.588 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5853 ; 1.990 ; 2.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 1107 ; 9.107 ; 2.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5730 ; 7.222 ; 2.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1RWH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1000021094. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 188554 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1RW9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, AMMONIUM ACETATE, GLYCEROL, REMARK 280 PHOSPHATE BUFFER, 10 HOURS SOAKING TIME, PH 6.4, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 100K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.15250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1082 O HOH A 1665 1.59 REMARK 500 O HOH A 1394 O HOH A 1567 1.89 REMARK 500 O6 ASG B 1 O HOH A 1506 1.94 REMARK 500 O HOH A 1158 O HOH A 1479 1.98 REMARK 500 O HOH A 1573 O HOH A 1732 2.01 REMARK 500 CB CYS A 114 O HOH A 1677 2.02 REMARK 500 O HOH A 1904 O HOH A 1994 2.02 REMARK 500 O HOH A 1476 O HOH A 1863 2.06 REMARK 500 O HOH A 1559 O HOH A 1643 2.08 REMARK 500 O HOH A 1555 O HOH A 2029 2.08 REMARK 500 SG CYS A 114 O HOH A 1677 2.10 REMARK 500 O HOH A 1359 O HOH A 1559 2.10 REMARK 500 NZ LYS A 203 O HOH A 1662 2.10 REMARK 500 O HOH A 1758 O HOH A 1783 2.11 REMARK 500 O HOH A 1576 O HOH A 1819 2.11 REMARK 500 O HOH A 1830 O HOH A 2061 2.13 REMARK 500 O HOH A 1824 O HOH A 1981 2.16 REMARK 500 O HOH A 1361 O HOH A 2103 2.16 REMARK 500 O HOH A 1852 O HOH A 2091 2.17 REMARK 500 O HOH A 1750 O HOH A 1799 2.18 REMARK 500 O GLY A 562 O HOH A 2034 2.18 REMARK 500 O HOH A 1362 O HOH A 2024 2.18 REMARK 500 O HOH A 1460 O HOH A 1778 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1486 O HOH A 2077 1556 1.79 REMARK 500 O HOH A 1955 O HOH A 2074 1655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 24 CB ASN A 24 CG 0.150 REMARK 500 ASN A 24 CG ASN A 24 OD1 0.149 REMARK 500 ASP A 509 CB ASP A 509 CG -0.165 REMARK 500 VAL A 565 CB VAL A 565 CG1 -0.135 REMARK 500 VAL A 613 CB VAL A 613 CG2 -0.133 REMARK 500 LYS A 661 CE LYS A 661 NZ 0.179 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 78 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 152 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 152 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 184 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 459 CB - CG - OD2 ANGL. DEV. = 8.6 DEGREES REMARK 500 ASP A 509 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 509 CB - CG - OD2 ANGL. DEV. = 10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 90 -7.29 73.81 REMARK 500 CYS A 114 -67.21 -148.54 REMARK 500 PHE A 170 152.64 96.09 REMARK 500 SER A 234 -39.22 70.11 REMARK 500 SER A 241 -73.12 -124.96 REMARK 500 SER A 421 32.80 -97.93 REMARK 500 GLU A 462 -1.36 75.58 REMARK 500 ASP A 509 -41.22 -132.34 REMARK 500 HIS A 536 -121.88 66.13 REMARK 500 PHE A 570 -63.74 -124.81 REMARK 500 ASN A 651 80.48 -153.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 SUGAR CHAIN D (GAD 809)-(NGL 810)-(GCT 811)-(NGL 812) REMARK 600 IS CHONDROITIN SULFATE TETRASACCHARIDE. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 900 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 233 O REMARK 620 2 THR A 235 OG1 87.6 REMARK 620 3 TRP A 465 O 149.9 119.8 REMARK 620 4 HOH A1044 O 90.2 84.1 81.2 REMARK 620 5 HOH A1276 O 94.6 92.7 96.2 174.1 REMARK 620 6 HOH A1506 O 79.8 158.9 77.1 112.5 71.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RW9 RELATED DB: PDB REMARK 900 THE SAME PROTEIN. NATIVE, APO-FORM REMARK 900 RELATED ID: 1RWA RELATED DB: PDB REMARK 900 THE SAME PROTEIN, HG DERIVATIVE REMARK 900 RELATED ID: 1RWC RELATED DB: PDB REMARK 900 THE SAME PROTEIN, IN COMPLEX WITH HYALURONAN DISACCHARIDE REMARK 900 RELATED ID: 1RWF RELATED DB: PDB REMARK 900 THE SAME PROTEIN, COMPLEX WITH CHONDROITIN SULFATE TETRASACHHARIDE, REMARK 900 30 SECONDS SOAKING TIME REMARK 900 RELATED ID: 1RWG RELATED DB: PDB REMARK 900 THE SAME PROTEIN, COMPLEX WITH CHONDROITIN SULFATE TETRASACHHARIDE, REMARK 900 10 MINUTES SOAKING TIME DBREF 1RWH A 1 757 UNP P84141 P84141_ARTAU 1 757 SEQRES 1 A 757 GLU ALA GLU PRO GLY ALA ALA GLU PHE ALA ALA LEU ARG SEQRES 2 A 757 ASN ARG TRP VAL ASP GLN ILE THR GLY ARG ASN VAL ILE SEQRES 3 A 757 GLN ALA GLY ASP PRO ASP PHE ALA LYS ALA ILE THR ALA SEQRES 4 A 757 LEU ASN ASN LYS ALA ALA ASP SER LEU ALA LYS LEU ASP SEQRES 5 A 757 ALA ALA ALA GLY ARG THR SER VAL PHE THR ASP LEU SER SEQRES 6 A 757 LEU ALA LYS ASP ALA GLU MET VAL THR THR TYR THR ARG SEQRES 7 A 757 LEU SER GLN LEU ALA THR ALA TRP ALA THR PRO THR ALA SEQRES 8 A 757 ALA VAL PHE GLY ASP ALA ALA VAL LEU ALA ALA ILE LYS SEQRES 9 A 757 ALA GLY LEU ALA ASP ALA ASN THR LEU CYS TYR ASN ASP SEQRES 10 A 757 ARG LYS GLU GLU VAL GLY ASN TRP TRP SER TRP GLU ILE SEQRES 11 A 757 GLY VAL PRO ARG ALA LEU ALA ASP ALA MET VAL LEU LEU SEQRES 12 A 757 HIS ALA GLU LEU SER ALA ALA GLU ARG THR ALA TYR CYS SEQRES 13 A 757 ALA ALA ILE ASP HIS PHE VAL PRO ASP PRO TRP LEU GLN SEQRES 14 A 757 PHE PRO PRO LYS ARG GLY LYS ILE THR SER VAL GLY ALA SEQRES 15 A 757 ASN ARG VAL ASP LEU CYS GLN GLY ILE ILE ILE ARG SER SEQRES 16 A 757 LEU ALA GLY GLU ASP PRO THR LYS LEU ASN HIS ALA VAL SEQRES 17 A 757 ALA GLY LEU SER GLN VAL TRP GLN TYR VAL THR SER GLY SEQRES 18 A 757 ASP GLY ILE PHE ARG ASP GLY SER PHE ILE GLN HIS SER SEQRES 19 A 757 THR THR PRO TYR THR GLY SER TYR GLY VAL VAL LEU LEU SEQRES 20 A 757 THR GLY LEU SER LYS LEU PHE SER LEU LEU GLY GLY THR SEQRES 21 A 757 ALA PHE GLU VAL SER ASP PRO THR ARG SER ILE PHE PHE SEQRES 22 A 757 ASP ALA VAL GLU GLY SER PHE ALA PRO VAL MET ILE ASN SEQRES 23 A 757 GLY ALA MET ALA ASP ALA VAL ARG GLY ARG SER ILE SER SEQRES 24 A 757 ARG GLU ALA ASN THR GLY TYR ASP LEU GLY ALA SER ALA SEQRES 25 A 757 ILE GLU ALA ILE LEU LEU LEU ALA ARG ALA MET ASP PRO SEQRES 26 A 757 ALA THR ALA ALA ARG TRP ARG GLY LEU CYS ALA GLY TRP SEQRES 27 A 757 ILE ALA ARG ASP THR TYR ARG PRO ILE LEU ASN SER ALA SEQRES 28 A 757 SER VAL PRO ARG THR ALA LEU VAL LYS GLN LEU GLU ALA SEQRES 29 A 757 THR GLY VAL ALA PRO VAL ALA GLU ALA THR GLY HIS LYS SEQRES 30 A 757 LEU PHE PRO ALA MET ASP ARG THR MET HIS ARG GLY PRO SEQRES 31 A 757 GLY TRP ALA LEU SER LEU ALA LEU SER SER ASN ARG ILE SEQRES 32 A 757 ALA TRP TYR GLU CYS GLY ASN GLY GLU ASN ASN ARG GLY SEQRES 33 A 757 TYR HIS THR GLY SER GLY MET THR TYR PHE TYR THR SER SEQRES 34 A 757 ASP LEU GLY GLN TYR ASP ASP ALA PHE TRP ALA THR ALA SEQRES 35 A 757 ASN TYR ASN ARG LEU PRO GLY ILE THR VAL ASP THR THR SEQRES 36 A 757 PRO LEU PRO ASP LYS VAL GLU GLY GLN TRP GLY ALA ALA SEQRES 37 A 757 VAL PRO ALA ASP GLU TRP SER GLY ALA THR ALA LEU GLY SEQRES 38 A 757 GLU VAL ALA ALA VAL GLY GLN HIS LEU VAL GLY PRO GLY SEQRES 39 A 757 ARG THR GLY LEU THR ALA ARG LYS SER TRP PHE VAL SER SEQRES 40 A 757 GLY ASP VAL THR VAL CYS LEU GLY ALA ASP ILE SER THR SEQRES 41 A 757 ALA SER GLY ALA LYS VAL GLU THR ILE VAL ASP HIS ARG SEQRES 42 A 757 ASN LEU HIS GLN GLY SER ASN THR LEU THR THR ALA ALA SEQRES 43 A 757 GLY THR ILE ALA GLY THR ALA GLY THR VAL GLU VAL LEU SEQRES 44 A 757 GLY ASP GLY ARG TRP VAL HIS LEU GLU GLY PHE GLY GLY SEQRES 45 A 757 TYR ALA MET LEU ASP ASP SER PRO LEU HIS VAL LEU ARG SEQRES 46 A 757 GLU THR ARG SER GLY SER TRP SER GLY VAL ASN ILE ASN SEQRES 47 A 757 GLY SER ALA THR VAL GLN GLN ARG ASN PHE ALA THR LEU SEQRES 48 A 757 TYR VAL ASN HIS GLY VAL GLY PRO VAL ALA GLY SER TYR SEQRES 49 A 757 ALA TYR MET VAL ALA PRO GLY ALA SER VAL ASP LEU THR SEQRES 50 A 757 ARG LYS LEU LEU GLU GLY ASN LYS TYR SER VAL ILE ARG SEQRES 51 A 757 ASN ASP ALA THR ALA GLN SER VAL GLU PHE LYS THR ALA SEQRES 52 A 757 LYS THR THR ALA ALA THR PHE TRP LYS PRO GLY MET ALA SEQRES 53 A 757 GLY ASP LEU GLY ALA SER GLY PRO ALA CYS VAL VAL PHE SEQRES 54 A 757 SER ARG HIS GLY ASN GLU LEU SER LEU ALA VAL SER GLU SEQRES 55 A 757 PRO THR GLN LYS ALA ALA GLY LEU THR LEU THR LEU PRO SEQRES 56 A 757 GLU GLY THR TRP SER SER VAL LEU GLU GLY ALA GLY THR SEQRES 57 A 757 LEU GLY THR ASP ALA ASP GLY ARG SER THR LEU THR LEU SEQRES 58 A 757 ASP THR THR GLY LEU SER GLY LYS THR LYS LEU ILE LYS SEQRES 59 A 757 LEU LYS ARG HET ASG B 1 19 HET GCT B 2 11 HET ASG B 3 19 HET GAD B 4 11 HET NA A 900 1 HET PO4 A 850 5 HET GOL A 801 6 HET GOL A 802 6 HET GOL A 803 6 HETNAM ASG 2-ACETAMIDO-2-DEOXY-4-O-SULFO-BETA-D-GALACTOPYRANOSE HETNAM GCT 2,6-ANHYDRO-3-DEOXY-L-XYLO-HEXONIC ACID HETNAM GAD 2,6-ANHYDRO-3-DEOXY-L-THREO-HEX-2-ENONIC ACID HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN ASG 2-DEOXY-2-ACETAMIDO-BETA-D-GALACTOSE-4-SULFATE; N- HETSYN 2 ASG ACETYL-4-O-SULFO-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2- HETSYN 3 ASG DEOXY-4-O-SULFO-BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY- HETSYN 4 ASG 4-O-SULFO-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-4-O-SULFO- HETSYN 5 ASG GALACTOSE HETSYN GCT 4,5-DIHYDROXY-TETRAHYDRO-PYRAN-2-CARBOXYLIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ASG 2(C8 H15 N O9 S) FORMUL 2 GCT C6 H10 O5 FORMUL 2 GAD C6 H8 O5 FORMUL 3 NA NA 1+ FORMUL 4 PO4 O4 P 3- FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 HOH *1107(H2 O) HELIX 1 1 GLY A 5 GLY A 22 1 18 HELIX 2 2 ASP A 30 LYS A 50 1 21 HELIX 3 3 LYS A 68 ALA A 87 1 20 HELIX 4 4 ASP A 96 CYS A 114 1 19 HELIX 5 5 ASN A 124 ILE A 130 1 7 HELIX 6 6 ILE A 130 LEU A 143 1 14 HELIX 7 7 SER A 148 VAL A 163 1 16 HELIX 8 8 PRO A 171 GLY A 175 5 5 HELIX 9 9 VAL A 180 GLU A 199 1 20 HELIX 10 10 ASP A 200 LEU A 211 1 12 HELIX 11 11 SER A 212 GLN A 216 5 5 HELIX 12 12 SER A 241 GLY A 258 1 18 HELIX 13 13 ASP A 266 THR A 268 5 3 HELIX 14 14 ARG A 269 SER A 279 1 11 HELIX 15 15 PHE A 280 PRO A 282 5 3 HELIX 16 16 ASP A 291 ARG A 300 5 10 HELIX 17 17 THR A 304 ARG A 321 1 18 HELIX 18 18 ASP A 324 ARG A 341 1 18 HELIX 19 19 SER A 352 GLY A 366 1 15 HELIX 20 20 PRO A 380 MET A 382 5 3 HELIX 21 21 ALA A 437 ALA A 442 1 6 HELIX 22 22 PRO A 493 THR A 496 5 4 HELIX 23 23 SER A 593 VAL A 595 5 3 HELIX 24 24 SER A 633 LEU A 640 1 8 SHEET 1 A 2 LEU A 168 GLN A 169 0 SHEET 2 A 2 ILE A 177 THR A 178 -1 O ILE A 177 N GLN A 169 SHEET 1 B 3 GLY A 223 ILE A 224 0 SHEET 2 B 3 PHE A 230 GLN A 232 -1 O ILE A 231 N GLY A 223 SHEET 3 B 3 THR A 236 PRO A 237 -1 O THR A 236 N GLN A 232 SHEET 1 C 2 MET A 284 ILE A 285 0 SHEET 2 C 2 ALA A 288 MET A 289 -1 O ALA A 288 N ILE A 285 SHEET 1 D 4 GLY A 375 PHE A 379 0 SHEET 2 D 4 ARG A 384 GLY A 389 -1 O MET A 386 N LYS A 377 SHEET 3 D 4 TRP A 392 ALA A 397 -1 O LEU A 394 N HIS A 387 SHEET 4 D 4 MET A 423 THR A 428 -1 O TYR A 427 N ALA A 393 SHEET 1 E 5 THR A 451 ASP A 453 0 SHEET 2 E 5 VAL A 526 HIS A 536 -1 O GLU A 527 N VAL A 452 SHEET 3 E 5 VAL A 603 GLY A 616 -1 O ALA A 609 N ARG A 533 SHEET 4 E 5 HIS A 582 SER A 591 -1 N ARG A 588 O ARG A 606 SHEET 5 E 5 GLU A 557 VAL A 558 -1 N GLU A 557 O VAL A 583 SHEET 1 F 9 SER A 475 LEU A 480 0 SHEET 2 F 9 VAL A 483 VAL A 491 -1 O GLY A 487 N GLY A 476 SHEET 3 F 9 THR A 499 VAL A 506 -1 O ALA A 500 N LEU A 490 SHEET 4 F 9 THR A 511 SER A 519 -1 O VAL A 512 N PHE A 505 SHEET 5 F 9 GLY A 622 PRO A 630 -1 O TYR A 626 N CYS A 513 SHEET 6 F 9 GLY A 571 MET A 575 -1 N GLY A 572 O ALA A 629 SHEET 7 F 9 TRP A 564 LEU A 567 -1 N LEU A 567 O GLY A 571 SHEET 8 F 9 LEU A 542 THR A 544 -1 N THR A 543 O HIS A 566 SHEET 9 F 9 THR A 548 ILE A 549 -1 O ILE A 549 N LEU A 542 SHEET 1 G 7 TYR A 646 ASN A 651 0 SHEET 2 G 7 ALA A 655 PHE A 660 -1 O SER A 657 N ARG A 650 SHEET 3 G 7 THR A 665 PHE A 670 -1 O THR A 665 N PHE A 660 SHEET 4 G 7 ALA A 685 HIS A 692 -1 O VAL A 687 N ALA A 668 SHEET 5 G 7 GLU A 695 SER A 701 -1 O GLU A 695 N HIS A 692 SHEET 6 G 7 LYS A 751 LYS A 756 -1 O ILE A 753 N LEU A 698 SHEET 7 G 7 SER A 721 GLU A 724 -1 N SER A 721 O LYS A 756 SHEET 1 H 5 GLY A 674 ALA A 676 0 SHEET 2 H 5 LEU A 679 ALA A 681 -1 O LEU A 679 N ALA A 676 SHEET 3 H 5 GLY A 709 THR A 713 -1 O THR A 713 N GLY A 680 SHEET 4 H 5 SER A 737 ASP A 742 -1 O LEU A 741 N LEU A 710 SHEET 5 H 5 THR A 728 THR A 731 -1 N THR A 728 O THR A 740 LINK O3 ASG B 1 C1 GCT B 2 1555 1555 1.42 LINK C4 GCT B 2 O1 ASG B 3 1555 1555 1.97 LINK O3 ASG B 3 C1 GAD B 4 1555 1555 1.44 LINK O HIS A 233 NA NA A 900 1555 1555 2.23 LINK OG1 THR A 235 NA NA A 900 1555 1555 2.72 LINK O TRP A 465 NA NA A 900 1555 1555 2.24 LINK NA NA A 900 O HOH A1044 1555 1555 2.44 LINK NA NA A 900 O HOH A1276 1555 1555 2.26 LINK NA NA A 900 O HOH A1506 1555 1555 2.62 CRYST1 57.621 86.305 80.514 90.00 106.95 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017355 0.000000 0.005290 0.00000 SCALE2 0.000000 0.011587 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012984 0.00000