HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 23-DEC-03 1RZ2 TITLE 1.6A CRYSTAL STRUCTURE OF THE PROTEIN BA4783/Q81L49 (SIMILAR TO TITLE 2 SORTASE B) FROM BACILLUS ANTHRACIS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL PROTEIN BA4783; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_TAXID: 198094; SOURCE 4 STRAIN: STR. AMES; SOURCE 5 GENE: BA4783; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDM68 KEYWDS SORTASE B PROTEIN, B. ANTHRACIS, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR R.WU,R.ZHANG,P.GORNICKI,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 6 14-FEB-24 1RZ2 1 REMARK REVDAT 5 13-JUL-11 1RZ2 1 VERSN REVDAT 4 24-FEB-09 1RZ2 1 VERSN REVDAT 3 05-APR-05 1RZ2 1 JRNL REVDAT 2 18-JAN-05 1RZ2 1 AUTHOR KEYWDS REMARK REVDAT 1 06-JUL-04 1RZ2 0 JRNL AUTH R.ZHANG,R.WU,G.JOACHIMIAK,S.K.MAZMANIAN,D.M.MISSIAKAS, JRNL AUTH 2 P.GORNICKI,O.SCHNEEWIND,A.JOACHIMIAK JRNL TITL STRUCTURES OF SORTASE B FROM STAPHYLOCOCCUS AUREUS AND JRNL TITL 2 BACILLUS ANTHRACIS REVEAL CATALYTIC AMINO ACID TRIAD IN THE JRNL TITL 3 ACTIVE SITE. JRNL REF STRUCTURE V. 12 1147 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15242591 JRNL DOI 10.1016/J.STR.2004.06.001 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 866183.200 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 53007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2643 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.70 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7725 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 416 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1781 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : -3.12000 REMARK 3 B33 (A**2) : 3.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.720 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 54.55 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FRIEDEL PAIRS WERE USED IN REFINEMENT. REMARK 4 REMARK 4 1RZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-DEC-03. REMARK 100 THE DEPOSITION ID IS D_1000021168. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795, 0.9798, 0.94656 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SBCCOLLECT REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53007 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.820 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 35.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.40200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: FRIEDEL PAIRS WERE USED. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACL, 20% PEG 3350, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.29950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN EXISTS AS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 GLU A 4 REMARK 465 LYS A 5 REMARK 465 GLU A 6 REMARK 465 ARG A 7 REMARK 465 LYS A 8 REMARK 465 LYS A 9 REMARK 465 LYS A 10 REMARK 465 ILE A 11 REMARK 465 PHE A 12 REMARK 465 PHE A 13 REMARK 465 GLN A 14 REMARK 465 ARG A 15 REMARK 465 ILE A 16 REMARK 465 LEU A 17 REMARK 465 THR A 18 REMARK 465 VAL A 19 REMARK 465 VAL A 20 REMARK 465 PHE A 21 REMARK 465 LEU A 22 REMARK 465 GLY A 23 REMARK 465 THR A 24 REMARK 465 PHE A 25 REMARK 465 PHE A 26 REMARK 465 TYR A 27 REMARK 465 SER A 28 REMARK 465 VAL A 29 REMARK 465 TYR A 30 REMARK 465 GLU A 31 REMARK 465 LEU A 32 REMARK 465 GLY A 33 REMARK 465 ASP A 34 REMARK 465 TYR A 235 REMARK 465 ALA A 236 REMARK 465 LEU A 237 REMARK 465 ASP A 238 REMARK 465 PRO A 239 REMARK 465 GLU A 240 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 89 O HOH A 388 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 56 138.80 -35.40 REMARK 500 ASN A 93 71.88 -162.56 REMARK 500 MET A 115 117.77 -160.75 REMARK 500 MET A 147 -116.83 59.41 REMARK 500 HIS A 163 52.09 -141.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NG5 RELATED DB: PDB REMARK 900 RELATED ID: APC2100 RELATED DB: TARGETDB DBREF 1RZ2 A 1 254 UNP Q81L49 Q81L49_BACAN 1 254 SEQRES 1 A 254 MET SER SER GLU LYS GLU ARG LYS LYS LYS ILE PHE PHE SEQRES 2 A 254 GLN ARG ILE LEU THR VAL VAL PHE LEU GLY THR PHE PHE SEQRES 3 A 254 TYR SER VAL TYR GLU LEU GLY ASP ILE PHE MET ASP TYR SEQRES 4 A 254 TYR GLU ASN ARG LYS VAL MET ALA GLU ALA GLN ASN ILE SEQRES 5 A 254 TYR GLU LYS SER PRO MET GLU GLU GLN SER GLN ASP GLY SEQRES 6 A 254 GLU VAL ARG LYS GLN PHE LYS ALA LEU GLN GLN ILE ASN SEQRES 7 A 254 GLN GLU ILE VAL GLY TRP ILE THR MET ASP ASP THR GLN SEQRES 8 A 254 ILE ASN TYR PRO ILE VAL GLN ALA LYS ASP ASN ASP TYR SEQRES 9 A 254 TYR LEU PHE ARG ASN TYR LYS GLY GLU ASP MET ARG ALA SEQRES 10 A 254 GLY SER ILE PHE MET ASP TYR ARG ASN ASP VAL LYS SER SEQRES 11 A 254 GLN ASN ARG ASN THR ILE LEU TYR GLY HIS ARG MET LYS SEQRES 12 A 254 ASP GLY SER MET PHE GLY SER LEU LYS LYS MET LEU ASP SEQRES 13 A 254 GLU GLU PHE PHE MET SER HIS ARG LYS LEU TYR TYR ASP SEQRES 14 A 254 THR LEU PHE GLU GLY TYR ASP LEU GLU VAL PHE SER VAL SEQRES 15 A 254 TYR THR THR THR THR ASP PHE TYR TYR ILE GLU THR ASP SEQRES 16 A 254 PHE SER SER ASP THR GLU TYR THR SER PHE LEU GLU LYS SEQRES 17 A 254 ILE GLN GLU LYS SER LEU TYR LYS THR ASP THR THR VAL SEQRES 18 A 254 THR ALA GLY ASP GLN ILE VAL THR LEU SER THR CYS ASP SEQRES 19 A 254 TYR ALA LEU ASP PRO GLU ALA GLY ARG LEU VAL VAL HIS SEQRES 20 A 254 ALA LYS LEU VAL LYS ARG GLN FORMUL 2 HOH *187(H2 O) HELIX 1 1 ASP A 38 SER A 56 1 19 HELIX 2 2 SER A 62 GLU A 66 5 5 HELIX 3 3 ARG A 68 GLN A 70 5 3 HELIX 4 4 PHE A 71 ASN A 78 1 8 HELIX 5 5 PHE A 148 LEU A 155 5 8 HELIX 6 6 ASP A 156 SER A 162 1 7 HELIX 7 7 SER A 198 SER A 213 1 16 SHEET 1 A 9 ILE A 81 THR A 86 0 SHEET 2 A 9 ASN A 93 GLN A 98 -1 O ILE A 96 N GLY A 83 SHEET 3 A 9 ILE A 120 MET A 122 1 O MET A 122 N VAL A 97 SHEET 4 A 9 ASN A 134 GLY A 139 -1 O TYR A 138 N PHE A 121 SHEET 5 A 9 ILE A 227 THR A 232 1 O THR A 229 N LEU A 137 SHEET 6 A 9 LEU A 244 LYS A 252 -1 O VAL A 246 N LEU A 230 SHEET 7 A 9 GLY A 174 THR A 184 -1 N ASP A 176 O VAL A 251 SHEET 8 A 9 LYS A 165 THR A 170 -1 N TYR A 168 O TYR A 175 SHEET 9 A 9 ILE A 81 THR A 86 -1 N THR A 86 O TYR A 167 CRYST1 40.474 64.599 42.964 90.00 105.77 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024707 0.000000 0.006977 0.00000 SCALE2 0.000000 0.015480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024186 0.00000