data_1S4G # _entry.id 1S4G # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1S4G pdb_00001s4g 10.2210/pdb1s4g/pdb RCSB RCSB021354 ? ? WWPDB D_1000021354 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1S4G _pdbx_database_status.recvd_initial_deposition_date 2004-01-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mayasundari, A.' 1 'Whittemore, N.A.' 2 'Serpersu, E.H.' 3 'Peterson, C.B.' 4 # _citation.id primary _citation.title 'The solution structure of the N-terminal domain of human vitronectin: proximal sites that regulate fibrinolysis and cell migration' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 279 _citation.page_first 29359 _citation.page_last 29366 _citation.year 2004 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15123712 _citation.pdbx_database_id_DOI 10.1074/jbc.M401279200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mayasundari, A.' 1 ? primary 'Whittemore, N.A.' 2 ? primary 'Serpersu, E.H.' 3 ? primary 'Peterson, C.B.' 4 ? # _cell.entry_id 1S4G _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S4G _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Vitronectin 5824.493 1 ? ? 'Somatomedin B' ? 2 non-polymer syn 'HYDROXIDE ION' 17.007 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code DQESCKGRCTEGFNVDKKCQCDELCSYYQSCCTDYTAECKPQVTRGDVFTM _entity_poly.pdbx_seq_one_letter_code_can DQESCKGRCTEGFNVDKKCQCDELCSYYQSCCTDYTAECKPQVTRGDVFTM _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 GLN n 1 3 GLU n 1 4 SER n 1 5 CYS n 1 6 LYS n 1 7 GLY n 1 8 ARG n 1 9 CYS n 1 10 THR n 1 11 GLU n 1 12 GLY n 1 13 PHE n 1 14 ASN n 1 15 VAL n 1 16 ASP n 1 17 LYS n 1 18 LYS n 1 19 CYS n 1 20 GLN n 1 21 CYS n 1 22 ASP n 1 23 GLU n 1 24 LEU n 1 25 CYS n 1 26 SER n 1 27 TYR n 1 28 TYR n 1 29 GLN n 1 30 SER n 1 31 CYS n 1 32 CYS n 1 33 THR n 1 34 ASP n 1 35 TYR n 1 36 THR n 1 37 ALA n 1 38 GLU n 1 39 CYS n 1 40 LYS n 1 41 PRO n 1 42 GLN n 1 43 VAL n 1 44 THR n 1 45 ARG n 1 46 GLY n 1 47 ASP n 1 48 VAL n 1 49 PHE n 1 50 THR n 1 51 MET n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name human _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus Homo _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue plasma _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VTNC_HUMAN _struct_ref.pdbx_db_accession P04004 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DQESCKGRCTEGFNVDKKCQCDELCSYYQSCCTDYTAECKPQVTRGDVFTM _struct_ref.pdbx_align_begin 20 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1S4G _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 51 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P04004 _struct_ref_seq.db_align_beg 20 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 70 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 51 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OH non-polymer . 'HYDROXIDE ION' ? 'H O -1' 17.007 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 1 1 '2D TOCSY' 3 1 1 DQF-COSY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 4.4 _pdbx_nmr_exptl_sample_conditions.ionic_strength low _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents 'Isolated from human plasma vitronectin by CNBr cleavage' _pdbx_nmr_sample_details.solvent_system ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.field_strength 600 # _pdbx_nmr_refine.entry_id 1S4G _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;NOE cross-peak intensities were converted into distance restraints as follows: strong, 1.8-2.7 ; medium, 1.8-3.4 ; weak, 1.8-4.5 , and very weak 1.8-6.0. An additional 1.0 was added to upper limits involving methyl protons, 0.5 for methylene protons and 2.3 for degenerate Hd and He protons of tyrosines and phenylalanines. Also, a 0.2 was added to the upper limits of NOEs involving amide protons. Backbone F angles were restrained to -120 50 for 3JHNHa = 8-9 Hz, and -120 40 for JHNHa > 9Hz. A restraint of 100 80 was also applied to F angle for residues that show stronger NHi-Hai-1 NOE than the intraresidue NH-Ha NOE. A total of 329 NOE restraints and 18 F restraints were used in structure determination. Random structures were generated by subjecting the peptide to an initial 10000-step minimization at 298K. The temperature was then raised gradually to 1000K during a 1000 step dynamics simulation. The peptide was subjected to minimization and a 10ps dynamics at 1000K. The NMR-derived restraints were then imposed on the peptide and the peptide was slowly annealed to 298K in a 100ps trajectory. Finally, the structures were subjected to further minimization at 298K. The force constant for the distance restraints was 100 kcal/mol 2 and the dielectric constant was 4. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1S4G _pdbx_nmr_ensemble.conformers_calculated_total_number 60 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with favorable non-bond energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1S4G _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal Discover 'Discover 3 (2000)' 'structure solution' 'Accelrys (San Diego, CA)' 1 Felix 'Felix 2000' processing 'Accelrys (San Diego, CA)' 2 Sparky ? 'data analysis' 'Goddard, T.D. and Kneller, D.G.' 3 MOLMOL ? 'data analysis' 'Koradi, R., Billeter, M., and Wuthrich, K.' 4 PROCHECK ? 'data analysis' 'Laskowski, R.A., Rullmann, J.A.C., MacArthur, M.W., Kaptein, R., and Thorntorn, J.M.' 5 Discover 'Discover 3 (2000)' refinement 'Accelrys (San Diego, CA)' 6 # _exptl.entry_id 1S4G _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.density_Matthews ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1S4G _struct.title 'Somatomedin-B Domain of human plasma vitronectin.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1S4G _struct_keywords.pdbx_keywords 'CELL ADHESION' _struct_keywords.text 'Somatomedin B domain, disulfide knot, vitronectin, CELL ADHESION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 9 SG ? ? A CYS 5 A CYS 9 1_555 ? ? ? ? ? ? ? 2.046 ? ? disulf2 disulf ? ? A CYS 19 SG ? ? ? 1_555 A CYS 31 SG ? ? A CYS 19 A CYS 31 1_555 ? ? ? ? ? ? ? 2.043 ? ? disulf3 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 32 SG ? ? A CYS 21 A CYS 32 1_555 ? ? ? ? ? ? ? 2.055 ? ? disulf4 disulf ? ? A CYS 25 SG ? ? ? 1_555 A CYS 39 SG ? ? A CYS 25 A CYS 39 1_555 ? ? ? ? ? ? ? 2.050 ? ? covale1 covale one ? A MET 51 C ? ? ? 1_555 B OH . O ? ? A MET 51 A OH 52 1_555 ? ? ? ? ? ? ? 1.364 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id OH _struct_site.pdbx_auth_seq_id 52 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE OH A 52' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 THR A 50 ? THR A 50 . ? 1_555 ? 2 AC1 2 MET A 51 ? MET A 51 . ? 1_555 ? # _database_PDB_matrix.entry_id 1S4G _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1S4G _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 CYS 5 5 5 CYS CYS A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 CYS 19 19 19 CYS CYS A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 CYS 25 25 25 CYS CYS A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 TYR 28 28 28 TYR TYR A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 CYS 31 31 31 CYS CYS A . n A 1 32 CYS 32 32 32 CYS CYS A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 TYR 35 35 35 TYR TYR A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 CYS 39 39 39 CYS CYS A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 ASP 47 47 47 ASP ASP A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 PHE 49 49 49 PHE PHE A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 MET 51 51 51 MET MET A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id OH _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 52 _pdbx_nonpoly_scheme.auth_seq_num 52 _pdbx_nonpoly_scheme.pdb_mon_id OH _pdbx_nonpoly_scheme.auth_mon_id OH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-06-08 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 15 ? ? 66.76 86.49 2 1 CYS A 21 ? ? -160.78 -63.61 3 1 ASP A 22 ? ? -84.08 -102.12 4 1 GLU A 23 ? ? 75.77 -68.96 5 1 LEU A 24 ? ? 178.83 -46.48 6 1 GLN A 29 ? ? 75.01 -108.59 7 1 ASP A 34 ? ? -139.92 -58.79 8 1 THR A 36 ? ? -83.01 -79.83 9 1 GLN A 42 ? ? -107.42 -63.27 10 1 ARG A 45 ? ? 67.44 -68.32 11 1 VAL A 48 ? ? 66.64 -81.73 12 2 SER A 4 ? ? 55.56 73.82 13 2 CYS A 5 ? ? 61.72 89.21 14 2 LYS A 6 ? ? -131.75 -66.66 15 2 LYS A 17 ? ? -137.14 -58.95 16 2 LYS A 18 ? ? -152.99 -49.72 17 2 CYS A 19 ? ? 151.70 93.37 18 2 ASP A 34 ? ? -131.87 -62.98 19 2 ARG A 45 ? ? -153.55 -52.77 20 2 VAL A 48 ? ? 78.52 -50.01 21 2 THR A 50 ? ? 72.91 -61.44 22 3 SER A 4 ? ? 74.04 133.76 23 3 GLU A 11 ? ? -79.71 -72.88 24 3 ASN A 14 ? ? 80.45 -46.66 25 3 VAL A 15 ? ? -74.20 -169.57 26 3 CYS A 19 ? ? 53.29 76.45 27 3 CYS A 31 ? ? 68.85 -57.89 28 3 TYR A 35 ? ? -126.42 -147.88 29 4 GLU A 3 ? ? -160.26 -41.89 30 4 SER A 4 ? ? -155.03 46.25 31 4 CYS A 5 ? ? 34.98 60.80 32 4 ARG A 8 ? ? -79.94 45.53 33 4 ASP A 16 ? ? 33.61 -91.63 34 4 LYS A 17 ? ? -145.53 55.73 35 4 CYS A 19 ? ? -162.25 116.42 36 4 TYR A 27 ? ? -94.07 -76.61 37 4 GLN A 29 ? ? 75.18 -53.89 38 4 SER A 30 ? ? 77.65 68.68 39 4 THR A 33 ? ? 72.99 -55.90 40 4 ASP A 34 ? ? -77.23 -98.91 41 4 GLU A 38 ? ? 67.85 166.81 42 4 GLN A 42 ? ? -143.25 -61.33 43 4 THR A 44 ? ? -145.55 -66.89 44 4 VAL A 48 ? ? 73.05 -61.62 45 4 PHE A 49 ? ? -56.51 103.81 46 5 GLN A 2 ? ? 53.15 -84.42 47 5 CYS A 19 ? ? 74.84 156.58 48 5 GLN A 20 ? ? -137.87 -58.49 49 5 CYS A 21 ? ? -161.75 77.59 50 5 GLU A 23 ? ? 73.25 170.74 51 5 SER A 30 ? ? -164.64 34.44 52 5 CYS A 31 ? ? -157.55 -69.85 53 5 THR A 33 ? ? 75.85 -45.69 54 5 ALA A 37 ? ? -167.19 -46.57 55 5 GLN A 42 ? ? -107.86 -89.28 56 5 ARG A 45 ? ? -159.54 -50.77 57 5 VAL A 48 ? ? 63.99 -82.23 58 5 THR A 50 ? ? -79.30 -140.26 59 6 GLN A 2 ? ? -145.11 35.20 60 6 GLU A 3 ? ? -158.52 -71.82 61 6 CYS A 9 ? ? -160.80 -54.06 62 6 THR A 10 ? ? -154.56 -50.85 63 6 PHE A 13 ? ? 66.95 179.08 64 6 CYS A 19 ? ? -169.26 98.55 65 6 CYS A 21 ? ? -150.25 -94.31 66 6 GLU A 23 ? ? -156.67 -65.34 67 6 LEU A 24 ? ? -171.05 -51.21 68 6 CYS A 32 ? ? -148.73 -65.84 69 6 ALA A 37 ? ? -169.64 -58.26 70 6 CYS A 39 ? ? -62.85 -75.63 71 6 PRO A 41 ? ? -72.17 -96.34 72 6 GLN A 42 ? ? -94.69 -72.35 73 6 PHE A 49 ? ? -91.95 40.82 74 7 GLU A 3 ? ? -109.08 -155.90 75 7 SER A 4 ? ? 61.91 -179.19 76 7 ASP A 16 ? ? 67.51 120.16 77 7 CYS A 19 ? ? -165.71 107.95 78 7 GLN A 20 ? ? -105.54 55.38 79 7 CYS A 21 ? ? 73.70 -38.23 80 7 ASP A 22 ? ? -67.06 -172.52 81 7 GLU A 23 ? ? 79.89 138.11 82 7 LEU A 24 ? ? -67.16 89.37 83 7 CYS A 25 ? ? -154.83 -54.51 84 7 SER A 26 ? ? -61.28 88.12 85 7 TYR A 27 ? ? -130.80 -63.43 86 7 CYS A 31 ? ? 38.90 37.50 87 7 THR A 33 ? ? 53.43 -86.52 88 7 THR A 36 ? ? -168.48 -151.49 89 7 ALA A 37 ? ? 73.64 -68.52 90 7 VAL A 48 ? ? 73.95 -67.10 91 7 PHE A 49 ? ? -86.56 41.55 92 8 SER A 4 ? ? 43.27 -121.11 93 8 LYS A 6 ? ? -139.71 -65.98 94 8 GLU A 11 ? ? -87.93 -97.44 95 8 PHE A 13 ? ? 179.77 -132.77 96 8 LYS A 18 ? ? -151.95 77.26 97 8 CYS A 19 ? ? 63.83 75.34 98 8 SER A 26 ? ? -138.06 -63.97 99 8 SER A 30 ? ? 39.63 49.35 100 8 THR A 33 ? ? 73.24 -62.76 101 8 ASP A 34 ? ? -81.57 -85.24 102 8 ALA A 37 ? ? -139.73 -45.63 103 8 THR A 44 ? ? -157.02 -45.81 104 9 SER A 4 ? ? 59.26 -102.20 105 9 CYS A 5 ? ? -141.84 55.26 106 9 PHE A 13 ? ? 69.02 -65.18 107 9 ASN A 14 ? ? 64.91 92.10 108 9 CYS A 19 ? ? -179.50 129.78 109 9 CYS A 21 ? ? 179.42 -65.56 110 9 GLU A 23 ? ? -127.18 -56.18 111 9 LEU A 24 ? ? 177.15 -50.12 112 9 CYS A 25 ? ? -79.53 49.16 113 9 SER A 26 ? ? -91.04 33.66 114 9 TYR A 27 ? ? -146.66 -51.60 115 9 CYS A 39 ? ? 166.88 -67.21 116 9 VAL A 48 ? ? -67.71 -70.92 117 10 CYS A 5 ? ? 22.31 60.04 118 10 CYS A 9 ? ? -57.12 95.25 119 10 ASN A 14 ? ? -167.97 117.27 120 10 CYS A 19 ? ? 71.15 146.41 121 10 GLN A 20 ? ? -121.51 -56.53 122 10 CYS A 21 ? ? -162.74 85.44 123 10 ASP A 22 ? ? -89.87 -152.12 124 10 GLN A 29 ? ? 65.66 -78.76 125 10 SER A 30 ? ? 18.64 -105.01 126 10 ALA A 37 ? ? -166.49 -46.65 127 11 SER A 4 ? ? 73.20 -62.59 128 11 LYS A 6 ? ? -103.35 57.78 129 11 CYS A 9 ? ? -176.46 -39.22 130 11 THR A 10 ? ? -135.27 -76.75 131 11 ASN A 14 ? ? -155.80 -35.46 132 11 ASP A 16 ? ? -102.03 -90.74 133 11 LYS A 17 ? ? -149.96 -56.90 134 11 CYS A 19 ? ? -176.61 143.55 135 11 CYS A 21 ? ? -158.62 48.61 136 11 SER A 30 ? ? -66.19 77.46 137 11 ASP A 34 ? ? -171.70 -21.19 138 11 LYS A 40 ? ? 171.33 147.39 139 11 VAL A 43 ? ? -81.41 48.56 140 12 SER A 4 ? ? 62.02 -172.97 141 12 LYS A 17 ? ? -136.51 -57.52 142 12 LYS A 18 ? ? -160.15 -57.64 143 12 CYS A 19 ? ? -174.63 85.90 144 12 CYS A 21 ? ? -157.19 52.63 145 12 TYR A 28 ? ? -150.88 -57.65 146 12 GLN A 29 ? ? -154.73 44.82 147 12 CYS A 31 ? ? -44.73 -72.84 148 12 ASP A 34 ? ? -137.32 -66.02 149 12 GLN A 42 ? ? -137.31 -68.55 150 12 ASP A 47 ? ? 63.02 -79.00 151 12 VAL A 48 ? ? 69.31 -65.07 152 12 THR A 50 ? ? 77.05 81.29 153 13 SER A 4 ? ? 57.35 18.86 154 13 LYS A 6 ? ? -93.34 -60.84 155 13 THR A 10 ? ? -133.62 -40.67 156 13 VAL A 15 ? ? 75.84 -65.29 157 13 GLN A 20 ? ? -71.55 -78.39 158 13 CYS A 21 ? ? -165.13 112.87 159 13 ASP A 22 ? ? 63.71 -90.59 160 13 GLU A 23 ? ? 59.66 -105.46 161 13 SER A 26 ? ? -5.83 -66.82 162 13 ALA A 37 ? ? 86.47 152.26 163 13 CYS A 39 ? ? 74.68 -61.64 164 13 VAL A 48 ? ? 74.92 -70.63 165 14 CYS A 5 ? ? 50.73 83.20 166 14 CYS A 9 ? ? -174.64 139.79 167 14 CYS A 21 ? ? -168.00 -54.64 168 14 ASP A 22 ? ? -65.92 95.61 169 14 SER A 30 ? ? 57.05 -161.52 170 14 CYS A 31 ? ? 47.14 -90.26 171 14 ASP A 34 ? ? -147.31 -104.91 172 14 THR A 36 ? ? -78.04 -164.12 173 14 ALA A 37 ? ? 82.49 -39.16 174 14 ARG A 45 ? ? -164.19 -94.44 175 14 ASP A 47 ? ? 50.69 -85.76 176 14 THR A 50 ? ? 71.51 78.22 177 15 GLN A 2 ? ? -98.23 -64.08 178 15 GLU A 11 ? ? -155.65 31.15 179 15 PHE A 13 ? ? 72.52 166.98 180 15 GLN A 29 ? ? -162.47 -52.82 181 15 CYS A 31 ? ? 179.25 -50.28 182 15 CYS A 32 ? ? -141.74 -69.27 183 15 ALA A 37 ? ? -156.92 -155.06 184 15 GLU A 38 ? ? -144.65 46.74 185 15 VAL A 48 ? ? 69.57 -71.63 186 16 SER A 4 ? ? -163.63 -70.15 187 16 LYS A 6 ? ? -81.32 -131.23 188 16 VAL A 15 ? ? -117.96 76.78 189 16 GLN A 20 ? ? -154.18 69.07 190 16 ASP A 22 ? ? -151.08 -9.09 191 16 CYS A 25 ? ? 177.97 -43.68 192 16 SER A 30 ? ? -157.86 -96.44 193 16 ASP A 34 ? ? -120.96 -73.04 194 16 ASP A 47 ? ? 64.98 -79.63 195 17 SER A 4 ? ? 74.89 -62.60 196 17 PHE A 13 ? ? -167.77 -53.77 197 17 ASN A 14 ? ? -162.07 -62.44 198 17 LYS A 18 ? ? 74.79 -64.12 199 17 CYS A 19 ? ? -158.11 81.25 200 17 CYS A 21 ? ? -145.14 -35.30 201 17 ASP A 22 ? ? -150.20 -67.24 202 17 LEU A 24 ? ? 83.05 -69.07 203 17 SER A 26 ? ? -161.52 -48.95 204 17 GLN A 29 ? ? -154.97 -73.53 205 17 SER A 30 ? ? -169.21 -73.09 206 17 THR A 33 ? ? 66.72 -66.06 207 17 ASP A 34 ? ? -79.02 -104.25 208 17 THR A 36 ? ? -170.11 136.69 209 17 ALA A 37 ? ? 165.46 -69.39 210 17 GLN A 42 ? ? -157.75 -157.95 211 17 ARG A 45 ? ? -165.45 -64.07 212 17 ASP A 47 ? ? 48.58 73.06 213 17 VAL A 48 ? ? 58.33 19.28 214 17 THR A 50 ? ? -121.85 -56.10 215 18 LYS A 6 ? ? -137.97 -60.15 216 18 LYS A 18 ? ? -109.16 60.42 217 18 CYS A 19 ? ? 58.51 93.87 218 18 CYS A 21 ? ? -166.52 65.82 219 18 GLN A 29 ? ? 31.60 54.55 220 18 CYS A 31 ? ? -150.05 71.84 221 18 CYS A 32 ? ? -156.52 -87.37 222 18 TYR A 35 ? ? -175.98 -176.24 223 18 CYS A 39 ? ? 51.30 -143.74 224 18 ARG A 45 ? ? -96.50 -63.50 225 18 VAL A 48 ? ? 69.31 -76.23 226 18 THR A 50 ? ? 76.36 -57.31 227 19 CYS A 9 ? ? -90.64 -118.13 228 19 ASN A 14 ? ? -74.70 -91.62 229 19 CYS A 21 ? ? 179.05 -51.01 230 19 GLN A 29 ? ? 28.57 51.48 231 19 CYS A 31 ? ? 50.11 -106.96 232 19 THR A 33 ? ? 72.98 -54.67 233 19 TYR A 35 ? ? -154.55 84.08 234 19 ALA A 37 ? ? -157.26 -44.67 235 19 LYS A 40 ? ? -171.46 67.23 236 19 PRO A 41 ? ? -66.99 90.04 237 19 ARG A 45 ? ? 67.69 -77.85 238 19 ASP A 47 ? ? 60.17 -159.86 239 20 ARG A 8 ? ? -153.17 -66.84 240 20 GLU A 11 ? ? -93.60 -66.32 241 20 VAL A 15 ? ? -129.09 -63.26 242 20 ASP A 16 ? ? -78.91 -89.24 243 20 GLN A 20 ? ? -156.21 -50.22 244 20 CYS A 21 ? ? -162.09 84.69 245 20 CYS A 31 ? ? 70.04 -66.46 246 20 ASP A 34 ? ? -139.98 -58.56 247 20 ALA A 37 ? ? 84.67 -62.94 248 20 CYS A 39 ? ? 68.01 -69.24 249 20 VAL A 48 ? ? 67.59 -76.15 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 TYR A 27 ? ? 0.074 'SIDE CHAIN' 2 2 TYR A 27 ? ? 0.115 'SIDE CHAIN' 3 4 TYR A 27 ? ? 0.082 'SIDE CHAIN' 4 5 ARG A 8 ? ? 0.091 'SIDE CHAIN' 5 5 TYR A 35 ? ? 0.083 'SIDE CHAIN' 6 6 TYR A 28 ? ? 0.069 'SIDE CHAIN' 7 7 TYR A 35 ? ? 0.110 'SIDE CHAIN' 8 9 TYR A 27 ? ? 0.101 'SIDE CHAIN' 9 9 TYR A 35 ? ? 0.067 'SIDE CHAIN' 10 10 TYR A 35 ? ? 0.064 'SIDE CHAIN' 11 13 TYR A 27 ? ? 0.066 'SIDE CHAIN' 12 13 TYR A 28 ? ? 0.070 'SIDE CHAIN' 13 13 TYR A 35 ? ? 0.140 'SIDE CHAIN' 14 17 TYR A 28 ? ? 0.094 'SIDE CHAIN' 15 17 TYR A 35 ? ? 0.077 'SIDE CHAIN' 16 18 TYR A 27 ? ? 0.078 'SIDE CHAIN' 17 19 TYR A 27 ? ? 0.074 'SIDE CHAIN' 18 19 TYR A 35 ? ? 0.076 'SIDE CHAIN' # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'HYDROXIDE ION' _pdbx_entity_nonpoly.comp_id OH #