HEADER TRANSFERASE 21-JAN-04 1S5J TITLE INSIGHT IN DNA REPLICATION: THE CRYSTAL STRUCTURE OF DNA POLYMERASE B1 TITLE 2 FROM THE ARCHAEON SULFOLOBUS SOLFATARICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE I; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 STRAIN: MT 4; SOURCE 5 GENE: DPO1, POLS, SSO0552; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT7-7 KEYWDS DNA POLYMERASE, REPLICATION, DISULFIDE BONDS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.SAVINO,L.FEDERICI,V.NASTOPOULOS,K.A.JOHNSON,F.M.PISANI,M.ROSSI, AUTHOR 2 D.TSERNOGLOU REVDAT 4 30-OCT-24 1S5J 1 REMARK LINK REVDAT 3 24-FEB-09 1S5J 1 VERSN REVDAT 2 19-APR-05 1S5J 1 JRNL REVDAT 1 09-NOV-04 1S5J 0 JRNL AUTH C.SAVINO,L.FEDERICI,K.A.JOHNSON,B.VALLONE,V.NASTOPOULOS, JRNL AUTH 2 M.ROSSI,F.M.PISANI,D.TSERNOGLOU JRNL TITL INSIGHTS INTO DNA REPLICATION: THE CRYSTAL STRUCTURE OF DNA JRNL TITL 2 POLYMERASE B1 FROM THE ARCHAEON SULFOLOBUS SOLFATARICUS JRNL REF STRUCTURE V. 12 2001 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15530364 JRNL DOI 10.1016/J.STR.2004.09.007 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH V.NASTOPOULOS,F.M.PISANI,C.SAVINO,L.FEDERICI,M.ROSSI, REMARK 1 AUTH 2 D.TSERNOGLOU REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDIES OF REMARK 1 TITL 2 DNA POLYMERASE FROM THE THERMOPHILIC ARCHAEON SULFOLOBUS REMARK 1 TITL 3 SOLFATARICUS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 54 1002 1998 REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 56677 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4038 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 204 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5936 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 248 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.85000 REMARK 3 B22 (A**2) : -1.99000 REMARK 3 B33 (A**2) : 3.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.252 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.221 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.117 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6103 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5599 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8256 ; 1.268 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13061 ; 0.825 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 721 ; 6.408 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 922 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6566 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1223 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1306 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6585 ; 0.213 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3821 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 236 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.094 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 52 ; 0.199 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.168 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3625 ; 0.696 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5903 ; 1.299 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2478 ; 1.568 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2353 ; 2.644 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1S5J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-04. REMARK 100 THE DEPOSITION ID IS D_1000021393. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9326 REMARK 200 MONOCHROMATOR : DIAMOND 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59688 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 93.73500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.40000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 93.73500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.40000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 36 REMARK 465 VAL A 37 REMARK 465 ARG A 38 REMARK 465 ARG A 39 REMARK 465 LYS A 391 REMARK 465 VAL A 392 REMARK 465 ILE A 483 REMARK 465 ARG A 484 REMARK 465 THR A 485 REMARK 465 SER A 486 REMARK 465 ALA A 487 REMARK 465 LEU A 488 REMARK 465 ILE A 489 REMARK 465 LYS A 490 REMARK 465 GLY A 491 REMARK 465 LYS A 492 REMARK 465 GLY A 493 REMARK 465 TYR A 494 REMARK 465 LYS A 495 REMARK 465 GLY A 496 REMARK 465 GLY A 697 REMARK 465 LEU A 698 REMARK 465 LYS A 699 REMARK 465 LYS A 700 REMARK 465 LYS A 719 REMARK 465 LYS A 720 REMARK 465 ARG A 721 REMARK 465 ASN A 722 REMARK 465 THR A 723 REMARK 465 PRO A 724 REMARK 465 GLU A 725 REMARK 465 PHE A 726 REMARK 465 ASN A 767 REMARK 465 LYS A 768 REMARK 465 GLY A 769 REMARK 465 TYR A 770 REMARK 465 ASN A 771 REMARK 465 LEU A 772 REMARK 465 ASP A 773 REMARK 465 GLU A 774 REMARK 465 LEU A 775 REMARK 465 ALA A 776 REMARK 465 PHE A 777 REMARK 465 LYS A 778 REMARK 465 VAL A 779 REMARK 465 MET A 780 REMARK 465 LEU A 781 REMARK 465 SER A 782 REMARK 465 LYS A 783 REMARK 465 PRO A 784 REMARK 465 LEU A 785 REMARK 465 ASP A 786 REMARK 465 ALA A 787 REMARK 465 TYR A 788 REMARK 465 LYS A 789 REMARK 465 LYS A 790 REMARK 465 ASN A 791 REMARK 465 THR A 792 REMARK 465 PRO A 793 REMARK 465 GLN A 794 REMARK 465 HIS A 795 REMARK 465 VAL A 796 REMARK 465 LYS A 797 REMARK 465 ALA A 798 REMARK 465 ALA A 799 REMARK 465 LEU A 800 REMARK 465 GLN A 801 REMARK 465 LEU A 802 REMARK 465 ARG A 803 REMARK 465 PRO A 804 REMARK 465 PHE A 805 REMARK 465 GLY A 806 REMARK 465 VAL A 807 REMARK 465 ASN A 808 REMARK 465 VAL A 809 REMARK 465 LEU A 810 REMARK 465 PRO A 811 REMARK 465 ARG A 812 REMARK 465 ASP A 813 REMARK 465 ILE A 814 REMARK 465 ILE A 815 REMARK 465 TYR A 816 REMARK 465 TYR A 817 REMARK 465 VAL A 818 REMARK 465 LYS A 819 REMARK 465 VAL A 820 REMARK 465 ARG A 821 REMARK 465 SER A 822 REMARK 465 LYS A 823 REMARK 465 ASP A 824 REMARK 465 GLY A 825 REMARK 465 VAL A 826 REMARK 465 LYS A 827 REMARK 465 PRO A 828 REMARK 465 VAL A 829 REMARK 465 GLN A 830 REMARK 465 LEU A 831 REMARK 465 ALA A 832 REMARK 465 LYS A 833 REMARK 465 VAL A 834 REMARK 465 THR A 835 REMARK 465 GLU A 836 REMARK 465 ALA A 865 REMARK 465 ALA A 866 REMARK 465 THR A 867 REMARK 465 MET A 868 REMARK 465 SER A 869 REMARK 465 ILE A 870 REMARK 465 ASP A 871 REMARK 465 SER A 872 REMARK 465 PHE A 873 REMARK 465 PHE A 874 REMARK 465 SER A 875 REMARK 465 TYR A 876 REMARK 465 PRO A 877 REMARK 465 SER A 878 REMARK 465 LYS A 879 REMARK 465 GLY A 880 REMARK 465 ASN A 881 REMARK 465 SER A 882 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 57 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 93 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 137 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 147 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP A 315 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 316 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 657 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 708 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 55 164.26 178.42 REMARK 500 ASP A 93 52.61 -92.09 REMARK 500 LEU A 94 -169.31 -112.26 REMARK 500 ASP A 112 -72.59 -99.21 REMARK 500 LYS A 150 82.44 -153.31 REMARK 500 ARG A 241 103.68 -164.63 REMARK 500 VAL A 274 65.54 -152.79 REMARK 500 PHE A 317 -73.97 -117.72 REMARK 500 PRO A 337 31.19 -79.76 REMARK 500 ASN A 509 79.77 39.01 REMARK 500 SER A 517 86.03 -151.61 REMARK 500 LYS A 540 67.49 -117.67 REMARK 500 ASP A 546 -86.96 -115.79 REMARK 500 GLU A 547 -62.08 -105.85 REMARK 500 THR A 548 30.08 -79.31 REMARK 500 VAL A 551 73.02 61.72 REMARK 500 LYS A 583 58.68 -109.11 REMARK 500 ASP A 655 -157.25 -106.96 REMARK 500 ASN A 663 92.41 -15.62 REMARK 500 PHE A 680 -162.61 -100.33 REMARK 500 ASP A 687 -73.27 -72.11 REMARK 500 ASP A 712 72.07 -106.12 REMARK 500 LEU A 717 74.30 -161.92 REMARK 500 LYS A 729 -63.55 -174.80 REMARK 500 ASN A 742 119.87 -28.73 REMARK 500 ASP A 746 -69.93 -146.15 REMARK 500 ALA A 839 -75.62 -131.52 REMARK 500 GLU A 840 -25.61 -140.17 REMARK 500 THR A 849 31.57 -97.23 REMARK 500 PHE A 850 5.28 -169.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 892 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 231 OD1 REMARK 620 2 ASP A 231 OD2 48.1 REMARK 620 3 GLU A 233 OE2 77.0 123.6 REMARK 620 4 ASP A 413 OD2 112.2 104.0 108.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 883 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 884 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 885 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 886 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 887 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 888 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 889 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 890 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 891 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 892 DBREF 1S5J A 36 882 UNP P26811 DPO1_SULSO 36 882 SEQRES 1 A 847 VAL VAL ARG ARG GLU TRP LEU GLU GLU ALA GLN GLU ASN SEQRES 2 A 847 LYS ILE TYR PHE LEU LEU GLN VAL ASP TYR ASP GLY LYS SEQRES 3 A 847 LYS GLY LYS ALA VAL CYS LYS LEU PHE ASP LYS GLU THR SEQRES 4 A 847 GLN LYS ILE TYR ALA LEU TYR ASP ASN THR GLY HIS LYS SEQRES 5 A 847 PRO TYR PHE LEU VAL ASP LEU GLU PRO ASP LYS VAL GLY SEQRES 6 A 847 LYS ILE PRO LYS ILE VAL ARG ASP PRO SER PHE ASP HIS SEQRES 7 A 847 ILE GLU THR VAL SER LYS ILE ASP PRO TYR THR TRP ASN SEQRES 8 A 847 LYS PHE LYS LEU THR LYS ILE VAL VAL ARG ASP PRO LEU SEQRES 9 A 847 ALA VAL ARG ARG LEU ARG ASN ASP VAL PRO LYS ALA TYR SEQRES 10 A 847 GLU ALA HIS ILE LYS TYR PHE ASN ASN TYR MET TYR ASP SEQRES 11 A 847 ILE GLY LEU ILE PRO GLY MET PRO TYR VAL VAL LYS ASN SEQRES 12 A 847 GLY LYS LEU GLU SER VAL TYR LEU SER LEU ASP GLU LYS SEQRES 13 A 847 ASP VAL GLU GLU ILE LYS LYS ALA PHE ALA ASP SER ASP SEQRES 14 A 847 GLU MET THR ARG GLN MET ALA VAL ASP TRP LEU PRO ILE SEQRES 15 A 847 PHE GLU THR GLU ILE PRO LYS ILE LYS ARG VAL ALA ILE SEQRES 16 A 847 ASP ILE GLU VAL TYR THR PRO VAL LYS GLY ARG ILE PRO SEQRES 17 A 847 ASP SER GLN LYS ALA GLU PHE PRO ILE ILE SER ILE ALA SEQRES 18 A 847 LEU ALA GLY SER ASP GLY LEU LYS LYS VAL LEU VAL LEU SEQRES 19 A 847 ASN ARG ASN ASP VAL ASN GLU GLY SER VAL LYS LEU ASP SEQRES 20 A 847 GLY ILE SER VAL GLU ARG PHE ASN THR GLU TYR GLU LEU SEQRES 21 A 847 LEU GLY ARG PHE PHE ASP ILE LEU LEU GLU TYR PRO ILE SEQRES 22 A 847 VAL LEU THR PHE ASN GLY ASP ASP PHE ASP LEU PRO TYR SEQRES 23 A 847 ILE TYR PHE ARG ALA LEU LYS LEU GLY TYR PHE PRO GLU SEQRES 24 A 847 GLU ILE PRO ILE ASP VAL ALA GLY LYS ASP GLU ALA LYS SEQRES 25 A 847 TYR LEU ALA GLY LEU HIS ILE ASP LEU TYR LYS PHE PHE SEQRES 26 A 847 PHE ASN LYS ALA VAL ARG ASN TYR ALA PHE GLU GLY LYS SEQRES 27 A 847 TYR ASN GLU TYR ASN LEU ASP ALA VAL ALA LYS ALA LEU SEQRES 28 A 847 LEU GLY THR SER LYS VAL LYS VAL ASP THR LEU ILE SER SEQRES 29 A 847 PHE LEU ASP VAL GLU LYS LEU ILE GLU TYR ASN PHE ARG SEQRES 30 A 847 ASP ALA GLU ILE THR LEU GLN LEU THR THR PHE ASN ASN SEQRES 31 A 847 ASP LEU THR MET LYS LEU ILE VAL LEU PHE SER ARG ILE SEQRES 32 A 847 SER ARG LEU GLY ILE GLU GLU LEU THR ARG THR GLU ILE SEQRES 33 A 847 SER THR TRP VAL LYS ASN LEU TYR TYR TRP GLU HIS ARG SEQRES 34 A 847 LYS ARG ASN TRP LEU ILE PRO LEU LYS GLU GLU ILE LEU SEQRES 35 A 847 ALA LYS SER SER ASN ILE ARG THR SER ALA LEU ILE LYS SEQRES 36 A 847 GLY LYS GLY TYR LYS GLY ALA VAL VAL ILE ASP PRO PRO SEQRES 37 A 847 ALA GLY ILE PHE PHE ASN ILE THR VAL LEU ASP PHE ALA SEQRES 38 A 847 SER LEU TYR PRO SER ILE ILE ARG THR TRP ASN LEU SER SEQRES 39 A 847 TYR GLU THR VAL ASP ILE GLN GLN CYS LYS LYS PRO TYR SEQRES 40 A 847 GLU VAL LYS ASP GLU THR GLY GLU VAL LEU HIS ILE VAL SEQRES 41 A 847 CYS MET ASP ARG PRO GLY ILE THR ALA VAL ILE THR GLY SEQRES 42 A 847 LEU LEU ARG ASP PHE ARG VAL LYS ILE TYR LYS LYS LYS SEQRES 43 A 847 ALA LYS ASN PRO ASN ASN SER GLU GLU GLN LYS LEU LEU SEQRES 44 A 847 TYR ASP VAL VAL GLN ARG ALA MET LYS VAL PHE ILE ASN SEQRES 45 A 847 ALA THR TYR GLY VAL PHE GLY ALA GLU THR PHE PRO LEU SEQRES 46 A 847 TYR ALA PRO ARG VAL ALA GLU SER VAL THR ALA LEU GLY SEQRES 47 A 847 ARG TYR VAL ILE THR SER THR VAL LYS LYS ALA ARG GLU SEQRES 48 A 847 GLU GLY LEU THR VAL LEU TYR GLY ASP THR ASP SER LEU SEQRES 49 A 847 PHE LEU LEU ASN PRO PRO LYS ASN SER LEU GLU ASN ILE SEQRES 50 A 847 ILE LYS TRP VAL LYS THR THR PHE ASN LEU ASP LEU GLU SEQRES 51 A 847 VAL ASP LYS THR TYR LYS PHE VAL ALA PHE SER GLY LEU SEQRES 52 A 847 LYS LYS ASN TYR PHE GLY VAL TYR GLN ASP GLY LYS VAL SEQRES 53 A 847 ASP ILE LYS GLY MET LEU VAL LYS LYS ARG ASN THR PRO SEQRES 54 A 847 GLU PHE VAL LYS LYS VAL PHE ASN GLU VAL LYS GLU LEU SEQRES 55 A 847 MET ILE SER ILE ASN SER PRO ASN ASP VAL LYS GLU ILE SEQRES 56 A 847 LYS ARG LYS ILE VAL ASP VAL VAL LYS GLY SER TYR GLU SEQRES 57 A 847 LYS LEU LYS ASN LYS GLY TYR ASN LEU ASP GLU LEU ALA SEQRES 58 A 847 PHE LYS VAL MET LEU SER LYS PRO LEU ASP ALA TYR LYS SEQRES 59 A 847 LYS ASN THR PRO GLN HIS VAL LYS ALA ALA LEU GLN LEU SEQRES 60 A 847 ARG PRO PHE GLY VAL ASN VAL LEU PRO ARG ASP ILE ILE SEQRES 61 A 847 TYR TYR VAL LYS VAL ARG SER LYS ASP GLY VAL LYS PRO SEQRES 62 A 847 VAL GLN LEU ALA LYS VAL THR GLU ILE ASP ALA GLU LYS SEQRES 63 A 847 TYR LEU GLU ALA LEU ARG SER THR PHE GLU GLN ILE LEU SEQRES 64 A 847 ARG ALA PHE GLY VAL SER TRP ASP GLU ILE ALA ALA THR SEQRES 65 A 847 MET SER ILE ASP SER PHE PHE SER TYR PRO SER LYS GLY SEQRES 66 A 847 ASN SER HET SO4 A 883 5 HET SO4 A 884 5 HET SO4 A 885 5 HET SO4 A 886 5 HET SO4 A 887 5 HET SO4 A 888 5 HET SO4 A 889 5 HET SO4 A 890 5 HET SO4 A 891 5 HET MG A 892 1 HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION FORMUL 2 SO4 9(O4 S 2-) FORMUL 11 MG MG 2+ FORMUL 12 HOH *248(H2 O) HELIX 1 1 GLU A 95 GLY A 100 1 6 HELIX 2 2 ILE A 102 ARG A 107 1 6 HELIX 3 3 ASP A 137 ARG A 145 1 9 HELIX 4 4 LYS A 157 GLY A 167 1 11 HELIX 5 5 ASP A 189 PHE A 200 1 12 HELIX 6 6 ASP A 204 LEU A 215 1 12 HELIX 7 7 LEU A 215 THR A 220 1 6 HELIX 8 8 THR A 291 LEU A 304 1 14 HELIX 9 9 PHE A 317 LYS A 328 1 12 HELIX 10 10 PHE A 332 ILE A 336 5 5 HELIX 11 11 LEU A 356 PHE A 361 1 6 HELIX 12 12 ASN A 362 ALA A 369 1 8 HELIX 13 13 ASN A 378 GLY A 388 1 11 HELIX 14 14 ASP A 402 LEU A 420 1 19 HELIX 15 15 THR A 422 ARG A 440 1 19 HELIX 16 16 GLY A 442 THR A 447 1 6 HELIX 17 17 GLU A 450 ASN A 467 1 18 HELIX 18 18 LEU A 472 LYS A 479 1 8 HELIX 19 19 SER A 517 TRP A 526 1 10 HELIX 20 20 GLY A 561 ILE A 577 1 17 HELIX 21 21 ILE A 577 LYS A 583 1 7 HELIX 22 22 SER A 588 ALA A 615 1 28 HELIX 23 23 ALA A 622 GLU A 646 1 25 HELIX 24 24 PRO A 665 PHE A 680 1 16 HELIX 25 25 LYS A 729 SER A 740 1 12 HELIX 26 26 LYS A 748 GLU A 763 1 16 HELIX 27 27 TYR A 842 SER A 848 1 7 HELIX 28 28 GLN A 852 GLY A 858 1 7 SHEET 1 A 5 LYS A 76 TYR A 81 0 SHEET 2 A 5 LYS A 64 ASP A 71 -1 N LEU A 69 O TYR A 78 SHEET 3 A 5 ILE A 50 ASP A 59 -1 N PHE A 52 O PHE A 70 SHEET 4 A 5 PRO A 173 LYS A 177 -1 O TYR A 174 N TYR A 51 SHEET 5 A 5 LYS A 180 SER A 183 -1 O LYS A 180 N LYS A 177 SHEET 1 B 4 PHE A 111 ILE A 120 0 SHEET 2 B 4 LYS A 127 VAL A 135 -1 O LEU A 130 N VAL A 117 SHEET 3 B 4 TYR A 89 VAL A 92 -1 N VAL A 92 O THR A 131 SHEET 4 B 4 ALA A 151 TYR A 152 -1 O TYR A 152 N LEU A 91 SHEET 1 C 7 VAL A 279 LEU A 281 0 SHEET 2 C 7 ILE A 284 PHE A 289 -1 O VAL A 286 N VAL A 279 SHEET 3 C 7 LYS A 264 LEU A 269 1 N VAL A 266 O GLU A 287 SHEET 4 C 7 ILE A 252 GLY A 259 -1 N ILE A 253 O LEU A 269 SHEET 5 C 7 ARG A 227 VAL A 234 -1 N ASP A 231 O ALA A 256 SHEET 6 C 7 ILE A 308 THR A 311 1 O LEU A 310 N VAL A 228 SHEET 7 C 7 LEU A 352 ASP A 355 1 O ILE A 354 N VAL A 309 SHEET 1 D 2 ILE A 338 ASP A 339 0 SHEET 2 D 2 LYS A 347 TYR A 348 -1 O LYS A 347 N ASP A 339 SHEET 1 E 6 VAL A 651 ASP A 655 0 SHEET 2 E 6 SER A 658 LEU A 662 -1 O PHE A 660 N TYR A 653 SHEET 3 E 6 GLY A 505 PHE A 515 -1 N THR A 511 O LEU A 661 SHEET 4 E 6 LEU A 684 PHE A 695 -1 O LYS A 691 N ASN A 509 SHEET 5 E 6 TYR A 702 VAL A 705 -1 O VAL A 705 N LYS A 691 SHEET 6 E 6 ILE A 713 LYS A 714 -1 O LYS A 714 N TYR A 702 SHEET 1 F 2 GLU A 543 VAL A 544 0 SHEET 2 F 2 HIS A 553 ILE A 554 -1 O HIS A 553 N VAL A 544 SSBOND 1 CYS A 538 CYS A 556 1555 1555 2.08 LINK OD1 ASP A 231 MG MG A 892 1555 1555 2.18 LINK OD2 ASP A 231 MG MG A 892 1555 1555 2.88 LINK OE2 GLU A 233 MG MG A 892 1555 1555 2.21 LINK OD2 ASP A 413 MG MG A 892 1555 1555 2.20 SITE 1 AC1 8 PRO A 138 ARG A 142 LYS A 157 TYR A 158 SITE 2 AC1 8 HOH A1019 HOH A1030 HOH A1068 HOH A1073 SITE 1 AC2 5 ARG A 574 LYS A 579 LYS A 603 HOH A 968 SITE 2 AC2 5 HOH A1136 SITE 1 AC3 4 ILE A 50 PHE A 52 LYS A 72 GLU A 221 SITE 1 AC4 5 ALA A 516 SER A 517 ASN A 607 HOH A 968 SITE 2 AC4 5 HOH A1132 SITE 1 AC5 3 LYS A 87 ARG A 136 LYS A 247 SITE 1 AC6 4 ARG A 142 ARG A 145 HOH A1010 HOH A1057 SITE 1 AC7 4 TRP A 41 GLU A 43 LYS A 76 ILE A 77 SITE 1 AC8 5 GLU A 276 PHE A 289 ASN A 290 THR A 291 SITE 2 AC8 5 GLU A 294 SITE 1 AC9 3 TYR A 152 GLU A 475 LYS A 479 SITE 1 BC1 3 ASP A 231 GLU A 233 ASP A 413 CRYST1 187.470 68.800 125.850 90.00 107.94 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005334 0.000000 0.001727 0.00000 SCALE2 0.000000 0.014535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008352 0.00000