data_1S5X # _entry.id 1S5X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1S5X RCSB RCSB021407 WWPDB D_1000021407 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1LA6 . unspecified PDB 1S5Y 'The same protein oxidized by ferricyanide' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1S5X _pdbx_database_status.recvd_initial_deposition_date 2004-01-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vitagliano, L.' 1 'Bonomi, G.' 2 'Riccio, A.' 3 'di Prisco, G.' 4 'Smulevich, G.' 5 'Mazzarella, L.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The oxidation process of Antarctic fish hemoglobins' Eur.J.Biochem. 271 1651 1659 2004 EJBCAI IX 0014-2956 0262 ? 15096204 10.1111/j.1432-1033.2004.04054.x 1 'The crystal structure of a tetrameric hemoglobin in a partial hemichrome state' Proc.Natl.Acad.Sci.USA 99 9801 9806 2002 PNASA6 US 0027-8424 0040 ? 12093902 10.1073/pnas.132182099 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Vitagliano, L.' 1 primary 'Bonomi, G.' 2 primary 'Riccio, A.' 3 primary 'Di Prisco, G.' 4 primary 'Smulevich, G.' 5 primary 'Mazzarella, L.' 6 1 'Riccio, A.' 7 1 'Vitagliano, L.' 8 1 'di Prisco, G.' 9 1 'Zagari, A.' 10 1 'Mazzarella, L.' 11 # _cell.entry_id 1S5X _cell.length_a 108.516 _cell.length_b 65.095 _cell.length_c 55.750 _cell.angle_alpha 90.00 _cell.angle_beta 113.48 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S5X _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Hemoglobin alpha chain' 15683.271 1 ? ? ? ? 2 polymer nat 'Hemoglobin beta chain' 16153.368 1 ? ? ? ? 3 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 2 ? ? ? ? 4 water nat water 18.015 27 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;(ACE)SLSDKDKAAVRALWSKIGKSADAIGNDALSRMIVVYPQTKTYFSHWPDVTPGSPHIKAHGKKVMGGIALAVSKID DLKTGLMELSEQHAYKLRVDPANFKILNHCILVVISTMFPKEFTPEAHVSLDKFLSGVALALAERYR ; ;XSLSDKDKAAVRALWSKIGKSADAIGNDALSRMIVVYPQTKTYFSHWPDVTPGSPHIKAHGKKVMGGIALAVSKIDDLKT GLMELSEQHAYKLRVDPANFKILNHCILVVISTMFPKEFTPEAHVSLDKFLSGVALALAERYR ; A ? 2 'polypeptide(L)' no no ;VEWTDKERSIISDIFSHMDYDDIGPKALSRCLIVYPWTQRHFSGFGNLYNAEAIIGNANVAAHGIKVLHGLDRGVKNMDN IAATYADLSTLHSEKLHVDPDNFKLLSDCITIVLAAKMGHAFTAETQGAFQKFLAVVVSALGKQYH ; ;VEWTDKERSIISDIFSHMDYDDIGPKALSRCLIVYPWTQRHFSGFGNLYNAEAIIGNANVAAHGIKVLHGLDRGVKNMDN IAATYADLSTLHSEKLHVDPDNFKLLSDCITIVLAAKMGHAFTAETQGAFQKFLAVVVSALGKQYH ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 SER n 1 3 LEU n 1 4 SER n 1 5 ASP n 1 6 LYS n 1 7 ASP n 1 8 LYS n 1 9 ALA n 1 10 ALA n 1 11 VAL n 1 12 ARG n 1 13 ALA n 1 14 LEU n 1 15 TRP n 1 16 SER n 1 17 LYS n 1 18 ILE n 1 19 GLY n 1 20 LYS n 1 21 SER n 1 22 ALA n 1 23 ASP n 1 24 ALA n 1 25 ILE n 1 26 GLY n 1 27 ASN n 1 28 ASP n 1 29 ALA n 1 30 LEU n 1 31 SER n 1 32 ARG n 1 33 MET n 1 34 ILE n 1 35 VAL n 1 36 VAL n 1 37 TYR n 1 38 PRO n 1 39 GLN n 1 40 THR n 1 41 LYS n 1 42 THR n 1 43 TYR n 1 44 PHE n 1 45 SER n 1 46 HIS n 1 47 TRP n 1 48 PRO n 1 49 ASP n 1 50 VAL n 1 51 THR n 1 52 PRO n 1 53 GLY n 1 54 SER n 1 55 PRO n 1 56 HIS n 1 57 ILE n 1 58 LYS n 1 59 ALA n 1 60 HIS n 1 61 GLY n 1 62 LYS n 1 63 LYS n 1 64 VAL n 1 65 MET n 1 66 GLY n 1 67 GLY n 1 68 ILE n 1 69 ALA n 1 70 LEU n 1 71 ALA n 1 72 VAL n 1 73 SER n 1 74 LYS n 1 75 ILE n 1 76 ASP n 1 77 ASP n 1 78 LEU n 1 79 LYS n 1 80 THR n 1 81 GLY n 1 82 LEU n 1 83 MET n 1 84 GLU n 1 85 LEU n 1 86 SER n 1 87 GLU n 1 88 GLN n 1 89 HIS n 1 90 ALA n 1 91 TYR n 1 92 LYS n 1 93 LEU n 1 94 ARG n 1 95 VAL n 1 96 ASP n 1 97 PRO n 1 98 ALA n 1 99 ASN n 1 100 PHE n 1 101 LYS n 1 102 ILE n 1 103 LEU n 1 104 ASN n 1 105 HIS n 1 106 CYS n 1 107 ILE n 1 108 LEU n 1 109 VAL n 1 110 VAL n 1 111 ILE n 1 112 SER n 1 113 THR n 1 114 MET n 1 115 PHE n 1 116 PRO n 1 117 LYS n 1 118 GLU n 1 119 PHE n 1 120 THR n 1 121 PRO n 1 122 GLU n 1 123 ALA n 1 124 HIS n 1 125 VAL n 1 126 SER n 1 127 LEU n 1 128 ASP n 1 129 LYS n 1 130 PHE n 1 131 LEU n 1 132 SER n 1 133 GLY n 1 134 VAL n 1 135 ALA n 1 136 LEU n 1 137 ALA n 1 138 LEU n 1 139 ALA n 1 140 GLU n 1 141 ARG n 1 142 TYR n 1 143 ARG n 2 1 VAL n 2 2 GLU n 2 3 TRP n 2 4 THR n 2 5 ASP n 2 6 LYS n 2 7 GLU n 2 8 ARG n 2 9 SER n 2 10 ILE n 2 11 ILE n 2 12 SER n 2 13 ASP n 2 14 ILE n 2 15 PHE n 2 16 SER n 2 17 HIS n 2 18 MET n 2 19 ASP n 2 20 TYR n 2 21 ASP n 2 22 ASP n 2 23 ILE n 2 24 GLY n 2 25 PRO n 2 26 LYS n 2 27 ALA n 2 28 LEU n 2 29 SER n 2 30 ARG n 2 31 CYS n 2 32 LEU n 2 33 ILE n 2 34 VAL n 2 35 TYR n 2 36 PRO n 2 37 TRP n 2 38 THR n 2 39 GLN n 2 40 ARG n 2 41 HIS n 2 42 PHE n 2 43 SER n 2 44 GLY n 2 45 PHE n 2 46 GLY n 2 47 ASN n 2 48 LEU n 2 49 TYR n 2 50 ASN n 2 51 ALA n 2 52 GLU n 2 53 ALA n 2 54 ILE n 2 55 ILE n 2 56 GLY n 2 57 ASN n 2 58 ALA n 2 59 ASN n 2 60 VAL n 2 61 ALA n 2 62 ALA n 2 63 HIS n 2 64 GLY n 2 65 ILE n 2 66 LYS n 2 67 VAL n 2 68 LEU n 2 69 HIS n 2 70 GLY n 2 71 LEU n 2 72 ASP n 2 73 ARG n 2 74 GLY n 2 75 VAL n 2 76 LYS n 2 77 ASN n 2 78 MET n 2 79 ASP n 2 80 ASN n 2 81 ILE n 2 82 ALA n 2 83 ALA n 2 84 THR n 2 85 TYR n 2 86 ALA n 2 87 ASP n 2 88 LEU n 2 89 SER n 2 90 THR n 2 91 LEU n 2 92 HIS n 2 93 SER n 2 94 GLU n 2 95 LYS n 2 96 LEU n 2 97 HIS n 2 98 VAL n 2 99 ASP n 2 100 PRO n 2 101 ASP n 2 102 ASN n 2 103 PHE n 2 104 LYS n 2 105 LEU n 2 106 LEU n 2 107 SER n 2 108 ASP n 2 109 CYS n 2 110 ILE n 2 111 THR n 2 112 ILE n 2 113 VAL n 2 114 LEU n 2 115 ALA n 2 116 ALA n 2 117 LYS n 2 118 MET n 2 119 GLY n 2 120 HIS n 2 121 ALA n 2 122 PHE n 2 123 THR n 2 124 ALA n 2 125 GLU n 2 126 THR n 2 127 GLN n 2 128 GLY n 2 129 ALA n 2 130 PHE n 2 131 GLN n 2 132 LYS n 2 133 PHE n 2 134 LEU n 2 135 ALA n 2 136 VAL n 2 137 VAL n 2 138 VAL n 2 139 SER n 2 140 ALA n 2 141 LEU n 2 142 GLY n 2 143 LYS n 2 144 GLN n 2 145 TYR n 2 146 HIS n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? 'emerald rockcod' 'Trematomus bernacchii' 40690 Trematomus ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? 'emerald rockcod' 'Trematomus bernacchii' 40690 Trematomus ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP HBA_PAGBE P80043 1 ;SLSDKDKAAVRALWSKIGKSADAIGNDALSRMIVVYPQTKTYFSHWPDVTPGSPHIKAHGKKVMGGIALAVSKIDDLKTG LMELSEQHAYKLRVDPANFKILNHCILVVISTMFPKEFTPEAHVSLDKFLSGVALALAERYR ; 1 ? 2 UNP HBB_PAGBE P80044 2 ;VEWTDKERSIISDIFSHMDYDDIGPKALSRCLIVYPWTQRHFSGFGNLYNAEAIIGNANVAAHGIKVLHGLDRGVKNMDN IAATYADLSTLHSEKLHVDPDNFKLLSDCITIVLAAKMGHAFTAETQGAFQKFLAVVVSALGKQYH ; 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1S5X A 2 ? 143 ? P80043 1 ? 142 ? 1 142 2 2 1S5X B 1 ? 146 ? P80044 1 ? 146 ? 1 146 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1S5X _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.84 _exptl_crystal.density_percent_sol 56.62 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'LIQUID DIFFUSION' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.6 _exptl_crystal_grow.pdbx_details 'MPEG 5000, Tris, pH 7.6, LIQUID DIFFUSION, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAC Science DIP-2030B' _diffrn_detector.pdbx_collection_date 2002-07-02 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ENRAF-NONIUS _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1S5X _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.40 _reflns.d_resolution_low 20.00 _reflns.number_all 14020 _reflns.number_obs 14020 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_all 99.6 _reflns_shell.Rmerge_I_obs 0.346 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1S5X _refine.ls_d_res_high 2.4 _refine.ls_d_res_low 20.0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 13525 _refine.ls_number_reflns_obs 12438 _refine.ls_number_reflns_R_free 1087 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_all 0.201 _refine.ls_R_factor_obs 0.195 _refine.ls_R_factor_R_work 0.19 _refine.ls_R_factor_R_free 0.233 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2154 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 86 _refine_hist.number_atoms_solvent 27 _refine_hist.number_atoms_total 2267 _refine_hist.d_res_high 2.4 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 17.2 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.93 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1S5X _struct.title 'The crystal structure of Trematomus bernacchii hemoglobin oxidized by air' _struct.pdbx_descriptor 'Hemoglobin alpha chain/Hemoglobin beta chain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1S5X _struct_keywords.pdbx_keywords 'OXYGEN STORAGE/TRANSPORT' _struct_keywords.text 'Hemichrome, bis-histidine, oxidation, OXYGEN STORAGE-TRANSPORT COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ;The biological assembly is a tetramer generated from the dimer in the asymmetric unit by the operations: -X,Y,-Z ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 4 ? GLY A 19 ? SER A 3 GLY A 18 1 ? 16 HELX_P HELX_P2 2 SER A 21 ? TYR A 37 ? SER A 20 TYR A 36 1 ? 17 HELX_P HELX_P3 3 PRO A 38 ? SER A 45 ? PRO A 37 SER A 44 5 ? 8 HELX_P HELX_P4 4 SER A 54 ? LYS A 74 ? SER A 53 LYS A 73 1 ? 21 HELX_P HELX_P5 5 ASP A 77 ? LEU A 82 ? ASP A 76 LEU A 81 1 ? 6 HELX_P HELX_P6 6 LEU A 82 ? LYS A 92 ? LEU A 81 LYS A 91 1 ? 11 HELX_P HELX_P7 7 ALA A 98 ? PHE A 115 ? ALA A 97 PHE A 114 1 ? 18 HELX_P HELX_P8 8 THR A 120 ? GLU A 140 ? THR A 119 GLU A 139 1 ? 21 HELX_P HELX_P9 9 ARG A 141 ? ARG A 143 ? ARG A 140 ARG A 142 5 ? 3 HELX_P HELX_P10 10 THR B 4 ? MET B 18 ? THR B 4 MET B 18 1 ? 15 HELX_P HELX_P11 11 ASP B 19 ? TYR B 35 ? ASP B 19 TYR B 35 1 ? 17 HELX_P HELX_P12 12 PRO B 36 ? SER B 43 ? PRO B 36 SER B 43 5 ? 8 HELX_P HELX_P13 13 ASN B 57 ? LYS B 76 ? ASN B 57 LYS B 76 1 ? 20 HELX_P HELX_P14 14 ASN B 80 ? TYR B 85 ? ASN B 80 TYR B 85 1 ? 6 HELX_P HELX_P15 15 TYR B 85 ? LYS B 95 ? TYR B 85 LYS B 95 1 ? 11 HELX_P HELX_P16 16 PRO B 100 ? GLY B 119 ? PRO B 100 GLY B 119 1 ? 20 HELX_P HELX_P17 17 HIS B 120 ? PHE B 122 ? HIS B 120 PHE B 122 5 ? 3 HELX_P HELX_P18 18 THR B 123 ? GLY B 142 ? THR B 123 GLY B 142 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? C HEM . FE ? ? ? 1_555 A HIS 89 NE2 ? ? A HEM 200 A HIS 88 1_555 ? ? ? ? ? ? ? 2.034 ? metalc2 metalc ? ? C HEM . FE ? ? ? 1_555 E HOH . O ? ? A HEM 200 A HOH 500 1_555 ? ? ? ? ? ? ? 2.120 ? metalc3 metalc ? ? D HEM . FE ? ? ? 1_555 B HIS 63 NE2 ? ? B HEM 400 B HIS 63 1_555 ? ? ? ? ? ? ? 2.045 ? metalc4 metalc ? ? D HEM . FE ? ? ? 1_555 B HIS 92 NE2 ? ? B HEM 400 B HIS 92 1_555 ? ? ? ? ? ? ? 2.010 ? covale1 covale ? ? A ACE 1 C ? ? ? 1_555 A SER 2 N ? ? A ACE 0 A SER 1 1_555 ? ? ? ? ? ? ? 1.331 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? covale ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 14 'BINDING SITE FOR RESIDUE HEM A 200' AC2 Software ? ? ? ? 12 'BINDING SITE FOR RESIDUE HEM B 400' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 MET A 33 ? MET A 32 . ? 1_555 ? 2 AC1 14 TYR A 43 ? TYR A 42 . ? 1_555 ? 3 AC1 14 HIS A 46 ? HIS A 45 . ? 1_555 ? 4 AC1 14 HIS A 60 ? HIS A 59 . ? 1_555 ? 5 AC1 14 LYS A 63 ? LYS A 62 . ? 1_555 ? 6 AC1 14 LEU A 85 ? LEU A 84 . ? 1_555 ? 7 AC1 14 GLN A 88 ? GLN A 87 . ? 1_555 ? 8 AC1 14 HIS A 89 ? HIS A 88 . ? 1_555 ? 9 AC1 14 LEU A 93 ? LEU A 92 . ? 1_555 ? 10 AC1 14 VAL A 95 ? VAL A 94 . ? 1_555 ? 11 AC1 14 ASN A 99 ? ASN A 98 . ? 1_555 ? 12 AC1 14 LEU A 103 ? LEU A 102 . ? 1_555 ? 13 AC1 14 LEU A 138 ? LEU A 137 . ? 1_555 ? 14 AC1 14 HOH E . ? HOH A 500 . ? 1_555 ? 15 AC2 12 HIS B 41 ? HIS B 41 . ? 1_555 ? 16 AC2 12 PHE B 42 ? PHE B 42 . ? 1_555 ? 17 AC2 12 HIS B 63 ? HIS B 63 . ? 1_555 ? 18 AC2 12 LYS B 66 ? LYS B 66 . ? 1_555 ? 19 AC2 12 LEU B 88 ? LEU B 88 . ? 1_555 ? 20 AC2 12 LEU B 91 ? LEU B 91 . ? 1_555 ? 21 AC2 12 HIS B 92 ? HIS B 92 . ? 1_555 ? 22 AC2 12 LEU B 96 ? LEU B 96 . ? 1_555 ? 23 AC2 12 ASN B 102 ? ASN B 102 . ? 1_555 ? 24 AC2 12 PHE B 103 ? PHE B 103 . ? 1_555 ? 25 AC2 12 LEU B 106 ? LEU B 106 . ? 1_555 ? 26 AC2 12 LEU B 141 ? LEU B 141 . ? 1_555 ? # _database_PDB_matrix.entry_id 1S5X _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1S5X _atom_sites.fract_transf_matrix[1][1] 0.00922 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00400 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01536 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.01956 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 SER 2 1 1 SER SER A . n A 1 3 LEU 3 2 2 LEU LEU A . n A 1 4 SER 4 3 3 SER SER A . n A 1 5 ASP 5 4 4 ASP ASP A . n A 1 6 LYS 6 5 5 LYS LYS A . n A 1 7 ASP 7 6 6 ASP ASP A . n A 1 8 LYS 8 7 7 LYS LYS A . n A 1 9 ALA 9 8 8 ALA ALA A . n A 1 10 ALA 10 9 9 ALA ALA A . n A 1 11 VAL 11 10 10 VAL VAL A . n A 1 12 ARG 12 11 11 ARG ARG A . n A 1 13 ALA 13 12 12 ALA ALA A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 TRP 15 14 14 TRP TRP A . n A 1 16 SER 16 15 15 SER SER A . n A 1 17 LYS 17 16 16 LYS LYS A . n A 1 18 ILE 18 17 17 ILE ILE A . n A 1 19 GLY 19 18 18 GLY GLY A . n A 1 20 LYS 20 19 19 LYS LYS A . n A 1 21 SER 21 20 20 SER SER A . n A 1 22 ALA 22 21 21 ALA ALA A . n A 1 23 ASP 23 22 22 ASP ASP A . n A 1 24 ALA 24 23 23 ALA ALA A . n A 1 25 ILE 25 24 24 ILE ILE A . n A 1 26 GLY 26 25 25 GLY GLY A . n A 1 27 ASN 27 26 26 ASN ASN A . n A 1 28 ASP 28 27 27 ASP ASP A . n A 1 29 ALA 29 28 28 ALA ALA A . n A 1 30 LEU 30 29 29 LEU LEU A . n A 1 31 SER 31 30 30 SER SER A . n A 1 32 ARG 32 31 31 ARG ARG A . n A 1 33 MET 33 32 32 MET MET A . n A 1 34 ILE 34 33 33 ILE ILE A . n A 1 35 VAL 35 34 34 VAL VAL A . n A 1 36 VAL 36 35 35 VAL VAL A . n A 1 37 TYR 37 36 36 TYR TYR A . n A 1 38 PRO 38 37 37 PRO PRO A . n A 1 39 GLN 39 38 38 GLN GLN A . n A 1 40 THR 40 39 39 THR THR A . n A 1 41 LYS 41 40 40 LYS LYS A . n A 1 42 THR 42 41 41 THR THR A . n A 1 43 TYR 43 42 42 TYR TYR A . n A 1 44 PHE 44 43 43 PHE PHE A . n A 1 45 SER 45 44 44 SER SER A . n A 1 46 HIS 46 45 45 HIS HIS A . n A 1 47 TRP 47 46 46 TRP TRP A . n A 1 48 PRO 48 47 47 PRO PRO A . n A 1 49 ASP 49 48 48 ASP ASP A . n A 1 50 VAL 50 49 49 VAL VAL A . n A 1 51 THR 51 50 50 THR THR A . n A 1 52 PRO 52 51 51 PRO PRO A . n A 1 53 GLY 53 52 52 GLY GLY A . n A 1 54 SER 54 53 53 SER SER A . n A 1 55 PRO 55 54 54 PRO PRO A . n A 1 56 HIS 56 55 55 HIS HIS A . n A 1 57 ILE 57 56 56 ILE ILE A . n A 1 58 LYS 58 57 57 LYS LYS A . n A 1 59 ALA 59 58 58 ALA ALA A . n A 1 60 HIS 60 59 59 HIS HIS A . n A 1 61 GLY 61 60 60 GLY GLY A . n A 1 62 LYS 62 61 61 LYS LYS A . n A 1 63 LYS 63 62 62 LYS LYS A . n A 1 64 VAL 64 63 63 VAL VAL A . n A 1 65 MET 65 64 64 MET MET A . n A 1 66 GLY 66 65 65 GLY GLY A . n A 1 67 GLY 67 66 66 GLY GLY A . n A 1 68 ILE 68 67 67 ILE ILE A . n A 1 69 ALA 69 68 68 ALA ALA A . n A 1 70 LEU 70 69 69 LEU LEU A . n A 1 71 ALA 71 70 70 ALA ALA A . n A 1 72 VAL 72 71 71 VAL VAL A . n A 1 73 SER 73 72 72 SER SER A . n A 1 74 LYS 74 73 73 LYS LYS A . n A 1 75 ILE 75 74 74 ILE ILE A . n A 1 76 ASP 76 75 75 ASP ASP A . n A 1 77 ASP 77 76 76 ASP ASP A . n A 1 78 LEU 78 77 77 LEU LEU A . n A 1 79 LYS 79 78 78 LYS LYS A . n A 1 80 THR 80 79 79 THR THR A . n A 1 81 GLY 81 80 80 GLY GLY A . n A 1 82 LEU 82 81 81 LEU LEU A . n A 1 83 MET 83 82 82 MET MET A . n A 1 84 GLU 84 83 83 GLU GLU A . n A 1 85 LEU 85 84 84 LEU LEU A . n A 1 86 SER 86 85 85 SER SER A . n A 1 87 GLU 87 86 86 GLU GLU A . n A 1 88 GLN 88 87 87 GLN GLN A . n A 1 89 HIS 89 88 88 HIS HIS A . n A 1 90 ALA 90 89 89 ALA ALA A . n A 1 91 TYR 91 90 90 TYR TYR A . n A 1 92 LYS 92 91 91 LYS LYS A . n A 1 93 LEU 93 92 92 LEU LEU A . n A 1 94 ARG 94 93 93 ARG ARG A . n A 1 95 VAL 95 94 94 VAL VAL A . n A 1 96 ASP 96 95 95 ASP ASP A . n A 1 97 PRO 97 96 96 PRO PRO A . n A 1 98 ALA 98 97 97 ALA ALA A . n A 1 99 ASN 99 98 98 ASN ASN A . n A 1 100 PHE 100 99 99 PHE PHE A . n A 1 101 LYS 101 100 100 LYS LYS A . n A 1 102 ILE 102 101 101 ILE ILE A . n A 1 103 LEU 103 102 102 LEU LEU A . n A 1 104 ASN 104 103 103 ASN ASN A . n A 1 105 HIS 105 104 104 HIS HIS A . n A 1 106 CYS 106 105 105 CYS CYS A . n A 1 107 ILE 107 106 106 ILE ILE A . n A 1 108 LEU 108 107 107 LEU LEU A . n A 1 109 VAL 109 108 108 VAL VAL A . n A 1 110 VAL 110 109 109 VAL VAL A . n A 1 111 ILE 111 110 110 ILE ILE A . n A 1 112 SER 112 111 111 SER SER A . n A 1 113 THR 113 112 112 THR THR A . n A 1 114 MET 114 113 113 MET MET A . n A 1 115 PHE 115 114 114 PHE PHE A . n A 1 116 PRO 116 115 115 PRO PRO A . n A 1 117 LYS 117 116 116 LYS LYS A . n A 1 118 GLU 118 117 117 GLU GLU A . n A 1 119 PHE 119 118 118 PHE PHE A . n A 1 120 THR 120 119 119 THR THR A . n A 1 121 PRO 121 120 120 PRO PRO A . n A 1 122 GLU 122 121 121 GLU GLU A . n A 1 123 ALA 123 122 122 ALA ALA A . n A 1 124 HIS 124 123 123 HIS HIS A . n A 1 125 VAL 125 124 124 VAL VAL A . n A 1 126 SER 126 125 125 SER SER A . n A 1 127 LEU 127 126 126 LEU LEU A . n A 1 128 ASP 128 127 127 ASP ASP A . n A 1 129 LYS 129 128 128 LYS LYS A . n A 1 130 PHE 130 129 129 PHE PHE A . n A 1 131 LEU 131 130 130 LEU LEU A . n A 1 132 SER 132 131 131 SER SER A . n A 1 133 GLY 133 132 132 GLY GLY A . n A 1 134 VAL 134 133 133 VAL VAL A . n A 1 135 ALA 135 134 134 ALA ALA A . n A 1 136 LEU 136 135 135 LEU LEU A . n A 1 137 ALA 137 136 136 ALA ALA A . n A 1 138 LEU 138 137 137 LEU LEU A . n A 1 139 ALA 139 138 138 ALA ALA A . n A 1 140 GLU 140 139 139 GLU GLU A . n A 1 141 ARG 141 140 140 ARG ARG A . n A 1 142 TYR 142 141 141 TYR TYR A . n A 1 143 ARG 143 142 142 ARG ARG A . n B 2 1 VAL 1 1 1 VAL VAL B . n B 2 2 GLU 2 2 2 GLU GLU B . n B 2 3 TRP 3 3 3 TRP TRP B . n B 2 4 THR 4 4 4 THR THR B . n B 2 5 ASP 5 5 5 ASP ASP B . n B 2 6 LYS 6 6 6 LYS LYS B . n B 2 7 GLU 7 7 7 GLU GLU B . n B 2 8 ARG 8 8 8 ARG ARG B . n B 2 9 SER 9 9 9 SER SER B . n B 2 10 ILE 10 10 10 ILE ILE B . n B 2 11 ILE 11 11 11 ILE ILE B . n B 2 12 SER 12 12 12 SER SER B . n B 2 13 ASP 13 13 13 ASP ASP B . n B 2 14 ILE 14 14 14 ILE ILE B . n B 2 15 PHE 15 15 15 PHE PHE B . n B 2 16 SER 16 16 16 SER SER B . n B 2 17 HIS 17 17 17 HIS HIS B . n B 2 18 MET 18 18 18 MET MET B . n B 2 19 ASP 19 19 19 ASP ASP B . n B 2 20 TYR 20 20 20 TYR TYR B . n B 2 21 ASP 21 21 21 ASP ASP B . n B 2 22 ASP 22 22 22 ASP ASP B . n B 2 23 ILE 23 23 23 ILE ILE B . n B 2 24 GLY 24 24 24 GLY GLY B . n B 2 25 PRO 25 25 25 PRO PRO B . n B 2 26 LYS 26 26 26 LYS LYS B . n B 2 27 ALA 27 27 27 ALA ALA B . n B 2 28 LEU 28 28 28 LEU LEU B . n B 2 29 SER 29 29 29 SER SER B . n B 2 30 ARG 30 30 30 ARG ARG B . n B 2 31 CYS 31 31 31 CYS CYS B . n B 2 32 LEU 32 32 32 LEU LEU B . n B 2 33 ILE 33 33 33 ILE ILE B . n B 2 34 VAL 34 34 34 VAL VAL B . n B 2 35 TYR 35 35 35 TYR TYR B . n B 2 36 PRO 36 36 36 PRO PRO B . n B 2 37 TRP 37 37 37 TRP TRP B . n B 2 38 THR 38 38 38 THR THR B . n B 2 39 GLN 39 39 39 GLN GLN B . n B 2 40 ARG 40 40 40 ARG ARG B . n B 2 41 HIS 41 41 41 HIS HIS B . n B 2 42 PHE 42 42 42 PHE PHE B . n B 2 43 SER 43 43 43 SER SER B . n B 2 44 GLY 44 44 44 GLY GLY B . n B 2 45 PHE 45 45 ? ? ? B . n B 2 46 GLY 46 46 ? ? ? B . n B 2 47 ASN 47 47 ? ? ? B . n B 2 48 LEU 48 48 ? ? ? B . n B 2 49 TYR 49 49 ? ? ? B . n B 2 50 ASN 50 50 ? ? ? B . n B 2 51 ALA 51 51 ? ? ? B . n B 2 52 GLU 52 52 ? ? ? B . n B 2 53 ALA 53 53 53 ALA ALA B . n B 2 54 ILE 54 54 54 ILE ILE B . n B 2 55 ILE 55 55 55 ILE ILE B . n B 2 56 GLY 56 56 56 GLY GLY B . n B 2 57 ASN 57 57 57 ASN ASN B . n B 2 58 ALA 58 58 58 ALA ALA B . n B 2 59 ASN 59 59 59 ASN ASN B . n B 2 60 VAL 60 60 60 VAL VAL B . n B 2 61 ALA 61 61 61 ALA ALA B . n B 2 62 ALA 62 62 62 ALA ALA B . n B 2 63 HIS 63 63 63 HIS HIS B . n B 2 64 GLY 64 64 64 GLY GLY B . n B 2 65 ILE 65 65 65 ILE ILE B . n B 2 66 LYS 66 66 66 LYS LYS B . n B 2 67 VAL 67 67 67 VAL VAL B . n B 2 68 LEU 68 68 68 LEU LEU B . n B 2 69 HIS 69 69 69 HIS HIS B . n B 2 70 GLY 70 70 70 GLY GLY B . n B 2 71 LEU 71 71 71 LEU LEU B . n B 2 72 ASP 72 72 72 ASP ASP B . n B 2 73 ARG 73 73 73 ARG ARG B . n B 2 74 GLY 74 74 74 GLY GLY B . n B 2 75 VAL 75 75 75 VAL VAL B . n B 2 76 LYS 76 76 76 LYS LYS B . n B 2 77 ASN 77 77 77 ASN ASN B . n B 2 78 MET 78 78 78 MET MET B . n B 2 79 ASP 79 79 79 ASP ASP B . n B 2 80 ASN 80 80 80 ASN ASN B . n B 2 81 ILE 81 81 81 ILE ILE B . n B 2 82 ALA 82 82 82 ALA ALA B . n B 2 83 ALA 83 83 83 ALA ALA B . n B 2 84 THR 84 84 84 THR THR B . n B 2 85 TYR 85 85 85 TYR TYR B . n B 2 86 ALA 86 86 86 ALA ALA B . n B 2 87 ASP 87 87 87 ASP ASP B . n B 2 88 LEU 88 88 88 LEU LEU B . n B 2 89 SER 89 89 89 SER SER B . n B 2 90 THR 90 90 90 THR THR B . n B 2 91 LEU 91 91 91 LEU LEU B . n B 2 92 HIS 92 92 92 HIS HIS B . n B 2 93 SER 93 93 93 SER SER B . n B 2 94 GLU 94 94 94 GLU GLU B . n B 2 95 LYS 95 95 95 LYS LYS B . n B 2 96 LEU 96 96 96 LEU LEU B . n B 2 97 HIS 97 97 97 HIS HIS B . n B 2 98 VAL 98 98 98 VAL VAL B . n B 2 99 ASP 99 99 99 ASP ASP B . n B 2 100 PRO 100 100 100 PRO PRO B . n B 2 101 ASP 101 101 101 ASP ASP B . n B 2 102 ASN 102 102 102 ASN ASN B . n B 2 103 PHE 103 103 103 PHE PHE B . n B 2 104 LYS 104 104 104 LYS LYS B . n B 2 105 LEU 105 105 105 LEU LEU B . n B 2 106 LEU 106 106 106 LEU LEU B . n B 2 107 SER 107 107 107 SER SER B . n B 2 108 ASP 108 108 108 ASP ASP B . n B 2 109 CYS 109 109 109 CYS CYS B . n B 2 110 ILE 110 110 110 ILE ILE B . n B 2 111 THR 111 111 111 THR THR B . n B 2 112 ILE 112 112 112 ILE ILE B . n B 2 113 VAL 113 113 113 VAL VAL B . n B 2 114 LEU 114 114 114 LEU LEU B . n B 2 115 ALA 115 115 115 ALA ALA B . n B 2 116 ALA 116 116 116 ALA ALA B . n B 2 117 LYS 117 117 117 LYS LYS B . n B 2 118 MET 118 118 118 MET MET B . n B 2 119 GLY 119 119 119 GLY GLY B . n B 2 120 HIS 120 120 120 HIS HIS B . n B 2 121 ALA 121 121 121 ALA ALA B . n B 2 122 PHE 122 122 122 PHE PHE B . n B 2 123 THR 123 123 123 THR THR B . n B 2 124 ALA 124 124 124 ALA ALA B . n B 2 125 GLU 125 125 125 GLU GLU B . n B 2 126 THR 126 126 126 THR THR B . n B 2 127 GLN 127 127 127 GLN GLN B . n B 2 128 GLY 128 128 128 GLY GLY B . n B 2 129 ALA 129 129 129 ALA ALA B . n B 2 130 PHE 130 130 130 PHE PHE B . n B 2 131 GLN 131 131 131 GLN GLN B . n B 2 132 LYS 132 132 132 LYS LYS B . n B 2 133 PHE 133 133 133 PHE PHE B . n B 2 134 LEU 134 134 134 LEU LEU B . n B 2 135 ALA 135 135 135 ALA ALA B . n B 2 136 VAL 136 136 136 VAL VAL B . n B 2 137 VAL 137 137 137 VAL VAL B . n B 2 138 VAL 138 138 138 VAL VAL B . n B 2 139 SER 139 139 139 SER SER B . n B 2 140 ALA 140 140 140 ALA ALA B . n B 2 141 LEU 141 141 141 LEU LEU B . n B 2 142 GLY 142 142 142 GLY GLY B . n B 2 143 LYS 143 143 143 LYS LYS B . n B 2 144 GLN 144 144 144 GLN GLN B . n B 2 145 TYR 145 145 ? ? ? B . n B 2 146 HIS 146 146 ? ? ? B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 89 ? A HIS 88 ? 1_555 FE ? C HEM . ? A HEM 200 ? 1_555 NA ? C HEM . ? A HEM 200 ? 1_555 88.4 ? 2 NE2 ? A HIS 89 ? A HIS 88 ? 1_555 FE ? C HEM . ? A HEM 200 ? 1_555 NB ? C HEM . ? A HEM 200 ? 1_555 94.9 ? 3 NA ? C HEM . ? A HEM 200 ? 1_555 FE ? C HEM . ? A HEM 200 ? 1_555 NB ? C HEM . ? A HEM 200 ? 1_555 88.0 ? 4 NE2 ? A HIS 89 ? A HIS 88 ? 1_555 FE ? C HEM . ? A HEM 200 ? 1_555 NC ? C HEM . ? A HEM 200 ? 1_555 94.1 ? 5 NA ? C HEM . ? A HEM 200 ? 1_555 FE ? C HEM . ? A HEM 200 ? 1_555 NC ? C HEM . ? A HEM 200 ? 1_555 177.1 ? 6 NB ? C HEM . ? A HEM 200 ? 1_555 FE ? C HEM . ? A HEM 200 ? 1_555 NC ? C HEM . ? A HEM 200 ? 1_555 90.4 ? 7 NE2 ? A HIS 89 ? A HIS 88 ? 1_555 FE ? C HEM . ? A HEM 200 ? 1_555 ND ? C HEM . ? A HEM 200 ? 1_555 88.8 ? 8 NA ? C HEM . ? A HEM 200 ? 1_555 FE ? C HEM . ? A HEM 200 ? 1_555 ND ? C HEM . ? A HEM 200 ? 1_555 88.2 ? 9 NB ? C HEM . ? A HEM 200 ? 1_555 FE ? C HEM . ? A HEM 200 ? 1_555 ND ? C HEM . ? A HEM 200 ? 1_555 174.6 ? 10 NC ? C HEM . ? A HEM 200 ? 1_555 FE ? C HEM . ? A HEM 200 ? 1_555 ND ? C HEM . ? A HEM 200 ? 1_555 93.2 ? 11 NE2 ? A HIS 89 ? A HIS 88 ? 1_555 FE ? C HEM . ? A HEM 200 ? 1_555 O ? E HOH . ? A HOH 500 ? 1_555 173.9 ? 12 NA ? C HEM . ? A HEM 200 ? 1_555 FE ? C HEM . ? A HEM 200 ? 1_555 O ? E HOH . ? A HOH 500 ? 1_555 97.7 ? 13 NB ? C HEM . ? A HEM 200 ? 1_555 FE ? C HEM . ? A HEM 200 ? 1_555 O ? E HOH . ? A HOH 500 ? 1_555 85.2 ? 14 NC ? C HEM . ? A HEM 200 ? 1_555 FE ? C HEM . ? A HEM 200 ? 1_555 O ? E HOH . ? A HOH 500 ? 1_555 79.7 ? 15 ND ? C HEM . ? A HEM 200 ? 1_555 FE ? C HEM . ? A HEM 200 ? 1_555 O ? E HOH . ? A HOH 500 ? 1_555 91.5 ? 16 NE2 ? B HIS 63 ? B HIS 63 ? 1_555 FE ? D HEM . ? B HEM 400 ? 1_555 NA ? D HEM . ? B HEM 400 ? 1_555 86.1 ? 17 NE2 ? B HIS 63 ? B HIS 63 ? 1_555 FE ? D HEM . ? B HEM 400 ? 1_555 NB ? D HEM . ? B HEM 400 ? 1_555 105.8 ? 18 NA ? D HEM . ? B HEM 400 ? 1_555 FE ? D HEM . ? B HEM 400 ? 1_555 NB ? D HEM . ? B HEM 400 ? 1_555 87.9 ? 19 NE2 ? B HIS 63 ? B HIS 63 ? 1_555 FE ? D HEM . ? B HEM 400 ? 1_555 NC ? D HEM . ? B HEM 400 ? 1_555 94.2 ? 20 NA ? D HEM . ? B HEM 400 ? 1_555 FE ? D HEM . ? B HEM 400 ? 1_555 NC ? D HEM . ? B HEM 400 ? 1_555 177.7 ? 21 NB ? D HEM . ? B HEM 400 ? 1_555 FE ? D HEM . ? B HEM 400 ? 1_555 NC ? D HEM . ? B HEM 400 ? 1_555 89.9 ? 22 NE2 ? B HIS 63 ? B HIS 63 ? 1_555 FE ? D HEM . ? B HEM 400 ? 1_555 ND ? D HEM . ? B HEM 400 ? 1_555 75.2 ? 23 NA ? D HEM . ? B HEM 400 ? 1_555 FE ? D HEM . ? B HEM 400 ? 1_555 ND ? D HEM . ? B HEM 400 ? 1_555 92.2 ? 24 NB ? D HEM . ? B HEM 400 ? 1_555 FE ? D HEM . ? B HEM 400 ? 1_555 ND ? D HEM . ? B HEM 400 ? 1_555 179.0 ? 25 NC ? D HEM . ? B HEM 400 ? 1_555 FE ? D HEM . ? B HEM 400 ? 1_555 ND ? D HEM . ? B HEM 400 ? 1_555 90.0 ? 26 NE2 ? B HIS 63 ? B HIS 63 ? 1_555 FE ? D HEM . ? B HEM 400 ? 1_555 NE2 ? B HIS 92 ? B HIS 92 ? 1_555 162.9 ? 27 NA ? D HEM . ? B HEM 400 ? 1_555 FE ? D HEM . ? B HEM 400 ? 1_555 NE2 ? B HIS 92 ? B HIS 92 ? 1_555 83.2 ? 28 NB ? D HEM . ? B HEM 400 ? 1_555 FE ? D HEM . ? B HEM 400 ? 1_555 NE2 ? B HIS 92 ? B HIS 92 ? 1_555 87.1 ? 29 NC ? D HEM . ? B HEM 400 ? 1_555 FE ? D HEM . ? B HEM 400 ? 1_555 NE2 ? B HIS 92 ? B HIS 92 ? 1_555 97.0 ? 30 ND ? D HEM . ? B HEM 400 ? 1_555 FE ? D HEM . ? B HEM 400 ? 1_555 NE2 ? B HIS 92 ? B HIS 92 ? 1_555 91.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-05-04 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XPRESS 'data collection' . ? 1 DENZO 'data reduction' . ? 2 AMoRE phasing . ? 3 CNS refinement . ? 4 XPRESS 'data reduction' . ? 5 SCALEPACK 'data scaling' . ? 6 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 O A SER 1 ? ? C A SER 1 ? ? N A LEU 2 ? ? 103.93 122.70 -18.77 1.60 Y 2 1 C B TYR 35 ? ? N B PRO 36 ? ? CA B PRO 36 ? ? 128.45 119.30 9.15 1.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 53 ? ? -22.21 131.46 2 1 ASP A 76 ? ? -156.00 82.75 3 1 ASN B 77 ? ? -147.30 51.34 4 1 ASN B 80 ? ? -146.00 50.94 5 1 SER B 93 ? ? -75.77 -76.02 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id SER _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 1 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle 22.98 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B PHE 45 ? B PHE 45 2 1 Y 1 B GLY 46 ? B GLY 46 3 1 Y 1 B ASN 47 ? B ASN 47 4 1 Y 1 B LEU 48 ? B LEU 48 5 1 Y 1 B TYR 49 ? B TYR 49 6 1 Y 1 B ASN 50 ? B ASN 50 7 1 Y 1 B ALA 51 ? B ALA 51 8 1 Y 1 B GLU 52 ? B GLU 52 9 1 Y 1 B TYR 145 ? B TYR 145 10 1 Y 1 B HIS 146 ? B HIS 146 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'PROTOPORPHYRIN IX CONTAINING FE' HEM 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM 1 200 200 HEM HEM A . D 3 HEM 1 400 400 HEM HEM B . E 4 HOH 1 500 500 HOH HOH A . E 4 HOH 2 502 502 HOH HOH A . E 4 HOH 3 504 504 HOH HOH A . E 4 HOH 4 506 506 HOH HOH A . E 4 HOH 5 507 507 HOH HOH A . E 4 HOH 6 508 508 HOH HOH A . E 4 HOH 7 510 510 HOH HOH A . E 4 HOH 8 512 512 HOH HOH A . E 4 HOH 9 513 513 HOH HOH A . E 4 HOH 10 519 519 HOH HOH A . E 4 HOH 11 521 521 HOH HOH A . E 4 HOH 12 525 525 HOH HOH A . E 4 HOH 13 526 526 HOH HOH A . E 4 HOH 14 529 529 HOH HOH A . E 4 HOH 15 530 530 HOH HOH A . F 4 HOH 1 501 501 HOH HOH B . F 4 HOH 2 503 503 HOH HOH B . F 4 HOH 3 505 505 HOH HOH B . F 4 HOH 4 511 511 HOH HOH B . F 4 HOH 5 516 516 HOH HOH B . F 4 HOH 6 517 517 HOH HOH B . F 4 HOH 7 523 523 HOH HOH B . F 4 HOH 8 528 528 HOH HOH B . F 4 HOH 9 532 532 HOH HOH B . F 4 HOH 10 534 534 HOH HOH B . F 4 HOH 11 535 535 HOH HOH B . F 4 HOH 12 536 536 HOH HOH B . #