HEADER TRANSFERASE 29-JAN-04 1S76 TITLE T7 RNA POLYMERASE ALPHA BETA METHYLENE ATP ELONGATION COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(P*GP*CP*CP*GP*TP*GP*CP*GP*CP*AP*TP*TP*CP*GP*CP*CP*GP*TP*GP*TP*T)- COMPND 4 3'); COMPND 5 CHAIN: T; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(P*TP*TP*TP*AP*CP*GP*TP*TP*GP*CP*GP*CP*AP*CP*GP*GP*C)-3'); COMPND 10 CHAIN: N; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: RNA (5'-R(P*AP*CP*AP*CP*GP*GP*CP*GP*A)-3'); COMPND 14 CHAIN: R; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: DNA-DIRECTED RNA POLYMERASE; COMPND 18 CHAIN: D; COMPND 19 EC: 2.7.7.6; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: DNA OLIGOMER IS SYNTHESIZED; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: DNA OLIGOMER IS SYNTHESIZED; SOURCE 7 MOL_ID: 3; SOURCE 8 SYNTHETIC: YES; SOURCE 9 OTHER_DETAILS: RNA OLIGOMER IS SYNTHESIZED; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T7; SOURCE 12 ORGANISM_TAXID: 10760; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS T7 RNA POLYMERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.W.YIN,T.A.STEITZ REVDAT 3 14-FEB-24 1S76 1 REMARK LINK REVDAT 2 24-FEB-09 1S76 1 VERSN REVDAT 1 23-MAR-04 1S76 0 JRNL AUTH Y.W.YIN,T.A.STEITZ JRNL TITL THE STRUCTURAL MECHANISM OF TRANSLOCATION AND HELICASE JRNL TITL 2 ACTIVITY IN T7 RNA POLYMERASE. JRNL REF CELL(CAMBRIDGE,MASS.) V. 116 393 2004 JRNL REFN ISSN 0092-8674 JRNL PMID 15016374 JRNL DOI 10.1016/S0092-8674(04)00120-5 REMARK 2 REMARK 2 RESOLUTION. 2.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4598334.230 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 33378 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2617 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2488 REMARK 3 BIN R VALUE (WORKING SET) : 0.5780 REMARK 3 BIN FREE R VALUE : 0.5780 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 199 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.059 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6555 REMARK 3 NUCLEIC ACID ATOMS : 973 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM SIGMAA (A) : 0.59 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.47 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.240 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.300 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.370 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.380 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.830 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.030 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 32.63 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : ABMATP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : ABMATP.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 195-199 ARE MISSING BUT REMARK 3 RESIDUE 194 IS LINKED TO RESIDUE 200 REMARK 4 REMARK 4 1S76 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-04. REMARK 100 THE DEPOSITION ID IS D_1000021452. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33378 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.880 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: T7 RNAP, DNA, RNA, ALPHA-BETA REMARK 280 METHYLENE ATP, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.32500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.32500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 69.36000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.66000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 69.36000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.66000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 73.32500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 69.36000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 71.66000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 73.32500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 69.36000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 71.66000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, N, R, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 1 REMARK 465 ASN D 2 REMARK 465 THR D 3 REMARK 465 ILE D 4 REMARK 465 ASN D 5 REMARK 465 ILE D 6 REMARK 465 ALA D 7 REMARK 465 LYS D 8 REMARK 465 ASN D 9 REMARK 465 ASP D 10 REMARK 465 PHE D 11 REMARK 465 LEU D 195 REMARK 465 LEU D 196 REMARK 465 GLY D 197 REMARK 465 GLY D 198 REMARK 465 GLU D 199 REMARK 465 ASN D 233 REMARK 465 ALA D 234 REMARK 465 GLY D 235 REMARK 465 VAL D 236 REMARK 465 VAL D 237 REMARK 465 GLY D 238 REMARK 465 GLN D 239 REMARK 465 ASP D 240 REMARK 465 LYS D 363 REMARK 465 PRO D 364 REMARK 465 GLU D 365 REMARK 465 ASP D 366 REMARK 465 ILE D 367 REMARK 465 ASP D 368 REMARK 465 MET D 369 REMARK 465 ASN D 370 REMARK 465 PRO D 371 REMARK 465 GLU D 372 REMARK 465 ALA D 373 REMARK 465 LEU D 374 REMARK 465 VAL D 594 REMARK 465 VAL D 595 REMARK 465 THR D 596 REMARK 465 VAL D 597 REMARK 465 THR D 598 REMARK 465 ASP D 599 REMARK 465 GLU D 600 REMARK 465 ASN D 601 REMARK 465 THR D 602 REMARK 465 GLY D 603 REMARK 465 GLU D 604 REMARK 465 ILE D 605 REMARK 465 SER D 606 REMARK 465 GLU D 607 REMARK 465 LYS D 608 REMARK 465 VAL D 609 REMARK 465 LYS D 610 REMARK 465 LEU D 611 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3' A R 2 C5' APC R 901 2.09 REMARK 500 O GLY D 456 O TRP D 459 2.09 REMARK 500 O2' A R 2 O4' APC R 901 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG T 130 P DG T 130 OP3 -0.087 REMARK 500 DT N 14 P DT N 14 OP3 -0.088 REMARK 500 A R 10 P A R 10 OP3 -0.087 REMARK 500 ARG D 292 C PRO D 293 N -0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT T 120 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC T 118 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC T 116 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU D 15 90.59 -50.28 REMARK 500 LEU D 16 -28.59 -177.56 REMARK 500 ALA D 17 90.47 -67.47 REMARK 500 PRO D 20 178.90 -47.64 REMARK 500 PHE D 21 -53.77 62.90 REMARK 500 HIS D 27 -40.30 -134.35 REMARK 500 LYS D 60 32.60 -80.50 REMARK 500 ALA D 61 23.71 -156.19 REMARK 500 GLU D 63 24.83 -155.04 REMARK 500 PHE D 89 -71.26 -48.27 REMARK 500 LEU D 106 -16.19 -158.27 REMARK 500 THR D 118 -83.57 -73.61 REMARK 500 THR D 127 -4.64 -150.45 REMARK 500 SER D 128 -67.87 -91.71 REMARK 500 ASN D 131 55.95 -107.33 REMARK 500 ASP D 147 42.87 -72.37 REMARK 500 GLU D 148 -64.64 -167.51 REMARK 500 ALA D 149 43.12 24.53 REMARK 500 ASP D 156 -145.31 -111.81 REMARK 500 LEU D 157 20.94 44.28 REMARK 500 ALA D 159 73.22 -106.84 REMARK 500 LYS D 163 42.77 -78.36 REMARK 500 LYS D 164 -47.49 -166.44 REMARK 500 SER D 192 171.56 54.54 REMARK 500 LYS D 193 -141.32 56.63 REMARK 500 ALA D 200 145.49 65.93 REMARK 500 TRP D 204 1.62 -59.53 REMARK 500 HIS D 205 143.73 61.62 REMARK 500 MET D 219 -40.82 72.80 REMARK 500 SER D 223 -74.08 -117.99 REMARK 500 MET D 226 -86.87 -48.75 REMARK 500 HIS D 230 -164.02 -64.19 REMARK 500 ARG D 231 36.38 -156.18 REMARK 500 ALA D 260 -74.29 -55.99 REMARK 500 ILE D 264 19.77 -143.89 REMARK 500 SER D 265 58.80 -144.63 REMARK 500 ILE D 281 -8.24 -58.47 REMARK 500 ARG D 292 76.23 -114.29 REMARK 500 MET D 313 59.45 -149.78 REMARK 500 TRP D 344 135.27 -28.53 REMARK 500 GLU D 350 81.61 -63.14 REMARK 500 ASP D 351 -35.90 -169.55 REMARK 500 ARG D 357 -175.62 -59.01 REMARK 500 GLU D 358 46.00 -105.80 REMARK 500 GLU D 359 -133.33 56.43 REMARK 500 LEU D 360 -37.38 -170.05 REMARK 500 ALA D 376 167.51 60.24 REMARK 500 ALA D 381 41.70 -94.52 REMARK 500 TYR D 385 -71.08 -51.54 REMARK 500 ASN D 410 -27.37 80.71 REMARK 500 REMARK 500 THIS ENTRY HAS 95 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT T 120 0.08 SIDE CHAIN REMARK 500 DT T 119 0.09 SIDE CHAIN REMARK 500 DC T 118 0.12 SIDE CHAIN REMARK 500 DG T 117 0.07 SIDE CHAIN REMARK 500 DC T 116 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 APC R 901 O2B REMARK 620 2 APC R 901 O2A 72.0 REMARK 620 3 ASP D 537 OD2 114.1 117.0 REMARK 620 4 ASP D 537 OD1 157.3 104.9 46.3 REMARK 620 5 GLY D 538 O 95.0 165.6 61.9 84.6 REMARK 620 6 ASP D 812 OD1 118.2 97.5 123.9 84.4 94.1 REMARK 620 7 MG D 903 MG 121.9 53.1 80.2 51.9 135.9 88.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 903 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 APC R 901 O2A REMARK 620 2 ASP D 537 OD1 142.0 REMARK 620 3 ASP D 812 OD2 104.2 73.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APC R 901 DBREF 1S76 D 1 883 UNP P00573 RPOL_BPT7 1 883 DBREF 1S76 T 130 110 PDB 1S76 1S76 130 110 DBREF 1S76 N 14 30 PDB 1S76 1S76 14 30 DBREF 1S76 R 10 2 PDB 1S76 1S76 10 2 SEQRES 1 T 21 DG DC DC DG DT DG DC DG DC DA DT DT DC SEQRES 2 T 21 DG DC DC DG DT DG DT DT SEQRES 1 N 17 DT DT DT DA DC DG DT DT DG DC DG DC DA SEQRES 2 N 17 DC DG DG DC SEQRES 1 R 9 A C A C G G C G A SEQRES 1 D 883 MET ASN THR ILE ASN ILE ALA LYS ASN ASP PHE SER ASP SEQRES 2 D 883 ILE GLU LEU ALA ALA ILE PRO PHE ASN THR LEU ALA ASP SEQRES 3 D 883 HIS TYR GLY GLU ARG LEU ALA ARG GLU GLN LEU ALA LEU SEQRES 4 D 883 GLU HIS GLU SER TYR GLU MET GLY GLU ALA ARG PHE ARG SEQRES 5 D 883 LYS MET PHE GLU ARG GLN LEU LYS ALA GLY GLU VAL ALA SEQRES 6 D 883 ASP ASN ALA ALA ALA LYS PRO LEU ILE THR THR LEU LEU SEQRES 7 D 883 PRO LYS MET ILE ALA ARG ILE ASN ASP TRP PHE GLU GLU SEQRES 8 D 883 VAL LYS ALA LYS ARG GLY LYS ARG PRO THR ALA PHE GLN SEQRES 9 D 883 PHE LEU GLN GLU ILE LYS PRO GLU ALA VAL ALA TYR ILE SEQRES 10 D 883 THR ILE LYS THR THR LEU ALA CYS LEU THR SER ALA ASP SEQRES 11 D 883 ASN THR THR VAL GLN ALA VAL ALA SER ALA ILE GLY ARG SEQRES 12 D 883 ALA ILE GLU ASP GLU ALA ARG PHE GLY ARG ILE ARG ASP SEQRES 13 D 883 LEU GLU ALA LYS HIS PHE LYS LYS ASN VAL GLU GLU GLN SEQRES 14 D 883 LEU ASN LYS ARG VAL GLY HIS VAL TYR LYS LYS ALA PHE SEQRES 15 D 883 MET GLN VAL VAL GLU ALA ASP MET LEU SER LYS GLY LEU SEQRES 16 D 883 LEU GLY GLY GLU ALA TRP SER SER TRP HIS LYS GLU ASP SEQRES 17 D 883 SER ILE HIS VAL GLY VAL ARG CYS ILE GLU MET LEU ILE SEQRES 18 D 883 GLU SER THR GLY MET VAL SER LEU HIS ARG GLN ASN ALA SEQRES 19 D 883 GLY VAL VAL GLY GLN ASP SER GLU THR ILE GLU LEU ALA SEQRES 20 D 883 PRO GLU TYR ALA GLU ALA ILE ALA THR ARG ALA GLY ALA SEQRES 21 D 883 LEU ALA GLY ILE SER PRO MET PHE GLN PRO CYS VAL VAL SEQRES 22 D 883 PRO PRO LYS PRO TRP THR GLY ILE THR GLY GLY GLY TYR SEQRES 23 D 883 TRP ALA ASN GLY ARG ARG PRO LEU ALA LEU VAL ARG THR SEQRES 24 D 883 HIS SER LYS LYS ALA LEU MET ARG TYR GLU ASP VAL TYR SEQRES 25 D 883 MET PRO GLU VAL TYR LYS ALA ILE ASN ILE ALA GLN ASN SEQRES 26 D 883 THR ALA TRP LYS ILE ASN LYS LYS VAL LEU ALA VAL ALA SEQRES 27 D 883 ASN VAL ILE THR LYS TRP LYS HIS CYS PRO VAL GLU ASP SEQRES 28 D 883 ILE PRO ALA ILE GLU ARG GLU GLU LEU PRO MET LYS PRO SEQRES 29 D 883 GLU ASP ILE ASP MET ASN PRO GLU ALA LEU THR ALA TRP SEQRES 30 D 883 LYS ARG ALA ALA ALA ALA VAL TYR ARG LYS ASP LYS ALA SEQRES 31 D 883 ARG LYS SER ARG ARG ILE SER LEU GLU PHE MET LEU GLU SEQRES 32 D 883 GLN ALA ASN LYS PHE ALA ASN HIS LYS ALA ILE TRP PHE SEQRES 33 D 883 PRO TYR ASN MET ASP TRP ARG GLY ARG VAL TYR ALA VAL SEQRES 34 D 883 SER MET PHE ASN PRO GLN GLY ASN ASP MET THR LYS GLY SEQRES 35 D 883 LEU LEU THR LEU ALA LYS GLY LYS PRO ILE GLY LYS GLU SEQRES 36 D 883 GLY TYR TYR TRP LEU LYS ILE HIS GLY ALA ASN CYS ALA SEQRES 37 D 883 GLY VAL ASP LYS VAL PRO PHE PRO GLU ARG ILE LYS PHE SEQRES 38 D 883 ILE GLU GLU ASN HIS GLU ASN ILE MET ALA CYS ALA LYS SEQRES 39 D 883 SER PRO LEU GLU ASN THR TRP TRP ALA GLU GLN ASP SER SEQRES 40 D 883 PRO PHE CYS PHE LEU ALA PHE CYS PHE GLU TYR ALA GLY SEQRES 41 D 883 VAL GLN HIS HIS GLY LEU SER TYR ASN CYS SER LEU PRO SEQRES 42 D 883 LEU ALA PHE ASP GLY SER CYS SER GLY ILE GLN HIS PHE SEQRES 43 D 883 SER ALA MET LEU ARG ASP GLU VAL GLY GLY ARG ALA VAL SEQRES 44 D 883 ASN LEU LEU PRO SER GLU THR VAL GLN ASP ILE TYR GLY SEQRES 45 D 883 ILE VAL ALA LYS LYS VAL ASN GLU ILE LEU GLN ALA ASP SEQRES 46 D 883 ALA ILE ASN GLY THR ASP ASN GLU VAL VAL THR VAL THR SEQRES 47 D 883 ASP GLU ASN THR GLY GLU ILE SER GLU LYS VAL LYS LEU SEQRES 48 D 883 GLY THR LYS ALA LEU ALA GLY GLN TRP LEU ALA TYR GLY SEQRES 49 D 883 VAL THR ARG SER VAL THR LYS ARG SER VAL MET THR LEU SEQRES 50 D 883 ALA TYR GLY SER LYS GLU PHE GLY PHE ARG GLN GLN VAL SEQRES 51 D 883 LEU GLU ASP THR ILE GLN PRO ALA ILE ASP SER GLY LYS SEQRES 52 D 883 GLY LEU MET PHE THR GLN PRO ASN GLN ALA ALA GLY TYR SEQRES 53 D 883 MET ALA LYS LEU ILE TRP GLU SER VAL SER VAL THR VAL SEQRES 54 D 883 VAL ALA ALA VAL GLU ALA MET ASN TRP LEU LYS SER ALA SEQRES 55 D 883 ALA LYS LEU LEU ALA ALA GLU VAL LYS ASP LYS LYS THR SEQRES 56 D 883 GLY GLU ILE LEU ARG LYS ARG CYS ALA VAL HIS TRP VAL SEQRES 57 D 883 THR PRO ASP GLY PHE PRO VAL TRP GLN GLU TYR LYS LYS SEQRES 58 D 883 PRO ILE GLN THR ARG LEU ASN LEU MET PHE LEU GLY GLN SEQRES 59 D 883 PHE ARG LEU GLN PRO THR ILE ASN THR ASN LYS ASP SER SEQRES 60 D 883 GLU ILE ASP ALA HIS LYS GLN GLU SER GLY ILE ALA PRO SEQRES 61 D 883 ASN PHE VAL HIS SER GLN ASP GLY SER HIS LEU ARG LYS SEQRES 62 D 883 THR VAL VAL TRP ALA HIS GLU LYS TYR GLY ILE GLU SER SEQRES 63 D 883 PHE ALA LEU ILE HIS ASP SER PHE GLY THR ILE PRO ALA SEQRES 64 D 883 ASP ALA ALA ASN LEU PHE LYS ALA VAL ARG GLU THR MET SEQRES 65 D 883 VAL ASP THR TYR GLU SER CYS ASP VAL LEU ALA ASP PHE SEQRES 66 D 883 TYR ASP GLN PHE ALA ASP GLN LEU HIS GLU SER GLN LEU SEQRES 67 D 883 ASP LYS MET PRO ALA LEU PRO ALA LYS GLY ASN LEU ASN SEQRES 68 D 883 LEU ARG ASP ILE LEU GLU SER ASP PHE ALA PHE ALA HET APC R 901 31 HET MG D 902 1 HET MG D 903 1 HETNAM APC DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETNAM MG MAGNESIUM ION HETSYN APC ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE FORMUL 5 APC C11 H18 N5 O12 P3 FORMUL 6 MG 2(MG 2+) HELIX 1 1 PHE D 21 GLY D 29 1 9 HELIX 2 2 GLY D 29 GLN D 58 1 30 HELIX 3 3 LEU D 59 GLY D 62 5 4 HELIX 4 4 GLU D 63 ASN D 67 5 5 HELIX 5 5 ALA D 70 LYS D 95 1 26 HELIX 6 6 PRO D 100 PHE D 105 1 6 HELIX 7 7 LYS D 110 CYS D 125 1 16 HELIX 8 8 THR D 133 ASP D 147 1 15 HELIX 9 9 VAL D 166 ASN D 171 1 6 HELIX 10 10 VAL D 177 ASP D 189 1 13 HELIX 11 11 TRP D 204 ILE D 221 1 18 HELIX 12 12 ALA D 251 GLY D 263 1 13 HELIX 13 13 SER D 301 ARG D 307 1 7 HELIX 14 14 MET D 313 ASN D 325 1 13 HELIX 15 15 ASN D 331 THR D 342 1 12 HELIX 16 16 ALA D 376 ALA D 380 5 5 HELIX 17 17 ALA D 383 ALA D 409 1 27 HELIX 18 18 ASN D 437 LEU D 443 1 7 HELIX 19 19 ILE D 452 GLY D 469 1 18 HELIX 20 20 PRO D 474 GLU D 484 1 11 HELIX 21 21 ASN D 485 SER D 495 1 11 HELIX 22 22 TRP D 501 GLN D 505 5 5 HELIX 23 23 SER D 507 GLY D 525 1 19 HELIX 24 24 CYS D 540 ARG D 551 1 12 HELIX 25 25 ASP D 552 VAL D 559 1 8 HELIX 26 26 ASP D 569 ALA D 584 1 16 HELIX 27 27 LYS D 614 GLY D 624 1 11 HELIX 28 28 THR D 630 LEU D 637 1 8 HELIX 29 29 ALA D 638 GLY D 640 5 3 HELIX 30 30 LYS D 642 THR D 654 1 13 HELIX 31 31 THR D 654 ASP D 660 1 7 HELIX 32 32 GLN D 672 VAL D 687 1 16 HELIX 33 33 VAL D 690 ALA D 708 1 19 HELIX 34 34 HIS D 772 GLY D 803 1 32 HELIX 35 35 ILE D 817 CYS D 839 1 23 HELIX 36 36 ASP D 840 ALA D 850 1 11 HELIX 37 37 ASN D 871 SER D 878 5 8 SHEET 1 A 2 VAL D 227 LEU D 229 0 SHEET 2 A 2 ILE D 244 LEU D 246 -1 O GLU D 245 N SER D 228 SHEET 1 B 2 TRP D 328 ILE D 330 0 SHEET 2 B 2 LEU D 444 LEU D 446 -1 O THR D 445 N LYS D 329 SHEET 1 C 2 TYR D 418 MET D 420 0 SHEET 2 C 2 VAL D 426 ALA D 428 -1 O TYR D 427 N ASN D 419 SHEET 1 D 2 LYS D 450 PRO D 451 0 SHEET 2 D 2 ASN D 529 CYS D 530 -1 O CYS D 530 N LYS D 450 SHEET 1 E 3 LEU D 534 ASP D 537 0 SHEET 2 E 3 SER D 813 THR D 816 -1 O THR D 816 N LEU D 534 SHEET 3 E 3 ALA D 808 LEU D 809 -1 N ALA D 808 O GLY D 815 SHEET 1 F 2 VAL D 725 VAL D 728 0 SHEET 2 F 2 PRO D 734 GLN D 737 -1 O VAL D 735 N TRP D 727 SHEET 1 G 2 LEU D 747 ASN D 748 0 SHEET 2 G 2 GLN D 754 PHE D 755 -1 O PHE D 755 N LEU D 747 LINK O2B APC R 901 MG MG D 902 1555 1555 1.97 LINK O2A APC R 901 MG MG D 902 1555 1555 3.12 LINK O2A APC R 901 MG MG D 903 1555 1555 2.63 LINK OD2 ASP D 537 MG MG D 902 1555 1555 2.39 LINK OD1 ASP D 537 MG MG D 902 1555 1555 3.02 LINK OD1 ASP D 537 MG MG D 903 1555 1555 2.52 LINK O GLY D 538 MG MG D 902 1555 1555 2.93 LINK OD1 ASP D 812 MG MG D 902 1555 1555 2.84 LINK OD2 ASP D 812 MG MG D 903 1555 1555 2.82 LINK MG MG D 902 MG MG D 903 1555 1555 2.70 SITE 1 AC1 5 ASP D 537 GLY D 538 ASP D 812 MG D 903 SITE 2 AC1 5 APC R 901 SITE 1 AC2 5 ASP D 537 ASP D 812 MG D 902 A R 2 SITE 2 AC2 5 APC R 901 SITE 1 AC3 15 ASP D 537 GLY D 538 CYS D 540 SER D 541 SITE 2 AC3 15 TYR D 571 ARG D 627 LYS D 631 TYR D 639 SITE 3 AC3 15 HIS D 784 ASP D 812 MG D 902 MG D 903 SITE 4 AC3 15 A R 2 DT T 119 DT T 120 CRYST1 138.720 143.320 146.650 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007209 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006977 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006819 0.00000