HEADER STRUCTURAL GENOMICS 29-JAN-04 1S7D TITLE CRYSTAL STRUCTURE OF REFINED TETRAGONAL CRYSTAL OF YODA FROM TITLE 2 ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: METAL-BINDING PROTEIN YODA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CADMIUM-INDUCED PROTEIN YODA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YODA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYPOTHETICAL, STRUCTURAL GENOMICS, X-RAY CRYTSALLOGRAPHY, BSGC KEYWDS 2 STRUCTURE FUNDED BY NIH, PROTEIN STRUCTURE INITIATIVE, PSI, BERKELEY KEYWDS 3 STRUCTURAL GENOMICS CENTER EXPDTA X-RAY DIFFRACTION AUTHOR D.H.SHIN,H.YOKOTA,R.KIM,S.H.KIM,BERKELEY STRUCTURAL GENOMICS CENTER AUTHOR 2 (BSGC) REVDAT 5 13-JUL-11 1S7D 1 VERSN REVDAT 4 24-FEB-09 1S7D 1 VERSN REVDAT 3 25-JAN-05 1S7D 1 AUTHOR KEYWDS REMARK REVDAT 2 24-AUG-04 1S7D 1 KEYWDS REVDAT 1 10-AUG-04 1S7D 0 JRNL AUTH D.H.SHIN,H.YOKOTA,R.KIM,S.H.KIM JRNL TITL CRYSTAL STRUCTURE OF REFINED TETRAGONAL CRYSTAL OF YODA FROM JRNL TITL 2 ESCHERICHIA COLI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 164588.450 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 79.7 REMARK 3 NUMBER OF REFLECTIONS : 10534 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1047 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 54.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1064 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 107 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1527 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.82000 REMARK 3 B22 (A**2) : 4.82000 REMARK 3 B33 (A**2) : -9.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.17 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.21 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.67 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.590 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 7.370 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 8.150 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 12.370; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 58.36 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1S7D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-04. REMARK 100 THE RCSB ID CODE IS RCSB021459. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13276 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 44.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M ZINC ACETATE, 0.1M SODIUM REMARK 280 CARCODYLATE, 18% PEG 8000, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.89250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 27.50450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 27.50450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.44625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 27.50450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 27.50450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 115.33875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 27.50450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 27.50450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.44625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 27.50450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 27.50450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 115.33875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.89250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -248.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 153.78500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 ALA A -21 REMARK 465 ILE A -20 REMARK 465 ARG A -19 REMARK 465 LEU A -18 REMARK 465 TYR A -17 REMARK 465 LYS A -16 REMARK 465 LEU A -15 REMARK 465 ALA A -14 REMARK 465 VAL A -13 REMARK 465 ALA A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 VAL A -9 REMARK 465 PHE A -8 REMARK 465 ILE A -7 REMARK 465 VAL A -6 REMARK 465 SER A -5 REMARK 465 ALA A -4 REMARK 465 PRO A -3 REMARK 465 ALA A -2 REMARK 465 PHE A -1 REMARK 465 SER A 0 REMARK 465 HIS A 1 REMARK 465 GLY A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 100 OG1 THR A 100 7556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 64 -6.39 83.14 REMARK 500 ARG A 96 -90.02 -99.40 REMARK 500 ASN A 97 75.01 -115.53 REMARK 500 ASP A 143 22.38 -150.24 REMARK 500 PRO A 148 123.15 -37.04 REMARK 500 ARG A 149 132.45 176.68 REMARK 500 HIS A 153 158.67 175.58 REMARK 500 MET A 191 36.82 -82.71 REMARK 500 SER A 192 -133.83 -150.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 144 NE2 REMARK 620 2 HIS A 155 NE2 101.4 REMARK 620 3 HOH A 301 O 65.0 68.8 REMARK 620 4 HOH A 368 O 124.1 121.2 160.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 189 OE2 REMARK 620 2 HIS A 193 NE2 61.9 REMARK 620 3 GLU A 189 OE1 51.0 101.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 95 ND1 REMARK 620 2 GLU A 93 OE2 101.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 380 O REMARK 620 2 ASP A 24 OD2 111.0 REMARK 620 3 HOH A 337 O 124.2 92.8 REMARK 620 4 HIS A 75 NE2 108.9 119.3 100.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BSGCAIR30656 RELATED DB: TARGETDB DBREF 1S7D A -22 193 UNP P76344 YODA_ECOLI 1 216 SEQRES 1 A 216 MET ALA ILE ARG LEU TYR LYS LEU ALA VAL ALA LEU GLY SEQRES 2 A 216 VAL PHE ILE VAL SER ALA PRO ALA PHE SER HIS GLY HIS SEQRES 3 A 216 HIS SER HIS GLY LYS PRO LEU THR GLU VAL GLU GLN LYS SEQRES 4 A 216 ALA ALA ASN GLY VAL PHE ASP ASP ALA ASN VAL GLN ASN SEQRES 5 A 216 ARG THR LEU SER ASP TRP ASP GLY VAL TRP GLN SER VAL SEQRES 6 A 216 TYR PRO LEU LEU GLN SER GLY LYS LEU ASP PRO VAL PHE SEQRES 7 A 216 GLN LYS LYS ALA ASP ALA ASP LYS THR LYS THR PHE ALA SEQRES 8 A 216 GLU ILE LYS ASP TYR TYR HIS LYS GLY TYR ALA THR ASP SEQRES 9 A 216 ILE GLU MET ILE GLY ILE GLU ASP GLY ILE VAL GLU PHE SEQRES 10 A 216 HIS ARG ASN ASN GLU THR THR SER CYS LYS TYR ASP TYR SEQRES 11 A 216 ASP GLY TYR LYS ILE LEU THR TYR LYS SER GLY LYS LYS SEQRES 12 A 216 GLY VAL ARG TYR LEU PHE GLU CYS LYS ASP PRO GLU SER SEQRES 13 A 216 LYS ALA PRO LYS TYR ILE GLN PHE SER ASP HIS ILE ILE SEQRES 14 A 216 ALA PRO ARG LYS SER SER HIS PHE HIS ILE PHE MET GLY SEQRES 15 A 216 ASN ASP SER GLN GLN SER LEU LEU ASN GLU MET GLU ASN SEQRES 16 A 216 TRP PRO THR TYR TYR PRO TYR GLN LEU SER SER GLU GLU SEQRES 17 A 216 VAL VAL GLU GLU MET MET SER HIS HET ZN A 201 1 HET ZN A 202 1 HET ZN A 203 1 HET ZN A 204 1 HETNAM ZN ZINC ION FORMUL 2 ZN 4(ZN 2+) FORMUL 6 HOH *83(H2 O) HELIX 1 1 THR A 11 ALA A 18 1 8 HELIX 2 2 ASP A 23 VAL A 27 5 5 HELIX 3 3 THR A 31 ASP A 36 5 6 HELIX 4 4 VAL A 42 SER A 48 1 7 HELIX 5 5 LEU A 51 ASP A 60 1 10 HELIX 6 6 THR A 66 ALA A 79 1 14 HELIX 7 7 SER A 162 GLU A 169 1 8 HELIX 8 8 SER A 182 MET A 191 1 10 SHEET 1 A 9 THR A 100 LYS A 104 0 SHEET 2 A 9 ILE A 91 HIS A 95 -1 N PHE A 94 O THR A 101 SHEET 3 A 9 MET A 84 GLU A 88 -1 N GLY A 86 O GLU A 93 SHEET 4 A 9 GLY A 37 SER A 41 -1 N TRP A 39 O ILE A 85 SHEET 5 A 9 THR A 175 PRO A 178 -1 O TYR A 177 N GLN A 40 SHEET 6 A 9 PHE A 154 GLY A 159 -1 N PHE A 154 O TYR A 176 SHEET 7 A 9 TYR A 138 SER A 142 -1 N TYR A 138 O GLY A 159 SHEET 8 A 9 LYS A 120 GLU A 127 -1 N TYR A 124 O PHE A 141 SHEET 9 A 9 ASP A 106 THR A 114 -1 N LEU A 113 O GLY A 121 SSBOND 1 CYS A 103 CYS A 128 1555 1555 2.04 LINK ZN ZN A 201 NE2 HIS A 144 1555 1555 2.30 LINK ZN ZN A 201 NE2 HIS A 155 1555 1555 2.23 LINK ZN ZN A 201 O HOH A 301 1555 1555 2.53 LINK ZN ZN A 201 O HOH A 368 1555 1555 2.43 LINK ZN ZN A 202 OE2 GLU A 189 1555 1555 2.75 LINK ZN ZN A 202 NE2 HIS A 193 1555 1555 2.36 LINK ZN ZN A 202 OE1 GLU A 189 1555 1555 2.29 LINK ZN ZN A 203 ND1 HIS A 95 1555 1555 2.14 LINK ZN ZN A 204 O HOH A 380 1555 1555 2.29 LINK ZN ZN A 204 OD2 ASP A 24 1555 1555 2.16 LINK ZN ZN A 204 O HOH A 337 1555 1555 2.37 LINK ZN ZN A 203 OE2 GLU A 93 1555 7556 2.44 LINK ZN ZN A 204 NE2 HIS A 75 1555 4454 2.15 SITE 1 AC1 5 HIS A 144 HIS A 155 HOH A 301 HOH A 366 SITE 2 AC1 5 HOH A 368 SITE 1 AC2 3 HIS A 153 GLU A 189 HIS A 193 SITE 1 AC3 3 GLU A 93 HIS A 95 HOH A 379 SITE 1 AC4 4 ASP A 24 HIS A 75 HOH A 337 HOH A 380 CRYST1 55.009 55.009 153.785 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018179 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006503 0.00000