data_1S9B # _entry.id 1S9B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1S9B pdb_00001s9b 10.2210/pdb1s9b/pdb NDB BD0069 ? ? RCSB RCSB021529 ? ? WWPDB D_1000021529 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-09-07 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ncs_dom_lim 7 4 'Structure model' struct_site 8 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.value' 21 4 'Structure model' '_struct_conn.pdbx_dist_value' 22 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 4 'Structure model' '_struct_ncs_dom_lim.beg_auth_comp_id' 37 4 'Structure model' '_struct_ncs_dom_lim.end_auth_comp_id' 38 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1S9B _pdbx_database_status.recvd_initial_deposition_date 2004-02-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Valls, N.' 1 'Uson, I.' 2 'Gouyette, C.' 3 'Subirana, J.A.' 4 # _citation.id primary _citation.title 'A cubic arrangement of DNA double helices based on nickel-guanine interactions' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 126 _citation.page_first 7812 _citation.page_last 7816 _citation.year 2004 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15212528 _citation.pdbx_database_id_DOI 10.1021/ja049393i # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Valls, N.' 1 ? primary 'Uson, I.' 2 ? primary 'Gouyette, C.' 3 ? primary 'Subirana, J.A.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*AP*AP*TP*TP*CP*G)-3'" 2137.435 2 ? ? ? ? 2 non-polymer syn 'NICKEL (II) ION' 58.693 4 ? ? ? ? 3 water nat water 18.015 20 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DA)(DA)(DT)(DT)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can GAATTCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NICKEL (II) ION' NI 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DA n 1 3 DA n 1 4 DT n 1 5 DT n 1 6 DC n 1 7 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DA 2 2 2 DA A A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DG 7 7 7 DG G A . n B 1 1 DG 1 1 1 DG G B . n B 1 2 DA 2 2 2 DA A B . n B 1 3 DA 3 3 3 DA A B . n B 1 4 DT 4 4 4 DT T B . n B 1 5 DT 5 5 5 DT T B . n B 1 6 DC 6 6 6 DC C B . n B 1 7 DG 7 7 7 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI 1 101 1 NI NI A . D 2 NI 1 103 3 NI NI A . E 2 NI 1 102 2 NI NI B . F 2 NI 1 104 4 NI NI B . G 3 HOH 1 102 2 HOH HOH A . G 3 HOH 2 109 9 HOH HOH A . G 3 HOH 3 110 10 HOH HOH A . G 3 HOH 4 111 11 HOH HOH A . G 3 HOH 5 112 12 HOH HOH A . G 3 HOH 6 113 13 HOH HOH A . G 3 HOH 7 119 19 HOH HOH A . G 3 HOH 8 120 20 HOH HOH A . G 3 HOH 9 121 21 HOH HOH A . G 3 HOH 10 122 22 HOH HOH A . H 3 HOH 1 101 1 HOH HOH B . H 3 HOH 2 103 3 HOH HOH B . H 3 HOH 3 114 14 HOH HOH B . H 3 HOH 4 115 15 HOH HOH B . H 3 HOH 5 116 16 HOH HOH B . H 3 HOH 6 117 17 HOH HOH B . H 3 HOH 7 118 4 HOH HOH B . H 3 HOH 8 123 23 HOH HOH B . H 3 HOH 9 124 24 HOH HOH B . H 3 HOH 10 125 25 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SHELXD phasing . ? 4 SHELXE 'model building' . ? 5 # _cell.entry_id 1S9B _cell.length_a 70.867 _cell.length_b 70.867 _cell.length_c 70.867 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S9B _symmetry.space_group_name_H-M 'I 2 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1S9B _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 64.54 _exptl_crystal.description ? _exptl_crystal.density_Matthews 3.47 _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details 'MPD, Nickel Chloride, cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 'Nickel Chloride' ? ? ? 1 3 1 cacodylate ? ? ? 1 4 1 H2O ? ? ? 1 5 2 MPD ? ? ? 1 6 2 'Nickel Chloride' ? ? ? 1 7 2 H2O ? ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 ? ? 1 2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD MARRESEARCH 2002-09-10 ? 2 CCD MARRESEARCH 2002-09-10 ? # _diffrn_radiation.diffrn_id 2 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.00000 1.0 2 1.48475 1.0 3 1.48563 1.0 4 1.31155 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'ESRF BEAMLINE BM14' ESRF BM14 ? 1.00000 2 SYNCHROTRON 'ESRF BEAMLINE BM14' ESRF BM14 ? '1.48475, 1.48563, 1.31155' # _reflns.entry_id 1S9B _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.81 _reflns.d_resolution_low 22.4 _reflns.number_all ? _reflns.number_obs 1491 _reflns.percent_possible_obs 97.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.095 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 2 _reflns.pdbx_ordinal 1 # _refine.entry_id 1S9B _refine.ls_number_reflns_obs 1388 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.4 _refine.ls_d_res_high 2.81 _refine.ls_percent_reflns_obs 95.73 _refine.ls_R_factor_obs 0.281 _refine.ls_R_factor_all 0.281 _refine.ls_R_factor_R_work 0.281 _refine.ls_R_factor_R_free 0.26428 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 69 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.905 _refine.correlation_coeff_Fo_to_Fc_free 0.906 _refine.B_iso_mean 36.940 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'ideal B-DNA' _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 1.150 _refine.pdbx_overall_ESU_R_Free 0.361 _refine.overall_SU_ML 0.207 _refine.overall_SU_B 11.090 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 2 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 284 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 20 _refine_hist.number_atoms_total 308 _refine_hist.d_res_high 2.81 _refine_hist.d_res_low 22.4 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.019 0.023 ? 396 'X-RAY DIFFRACTION' ? r_angle_refined_deg 3.124 3.000 ? 488 'X-RAY DIFFRACTION' ? r_chiral_restr 0.100 0.200 ? 42 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 150 'X-RAY DIFFRACTION' ? r_nbd_refined 0.231 0.200 ? 110 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.202 0.200 ? 14 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.245 0.200 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.078 0.200 ? 2 'X-RAY DIFFRACTION' ? r_mcbond_it 0.568 1.500 ? 35 'X-RAY DIFFRACTION' ? r_scbond_it 2.890 3.000 ? 325 'X-RAY DIFFRACTION' ? r_scangle_it 4.730 4.500 ? 488 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight 1 'tight positional' A 142 0.07 0.05 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? 1 'tight thermal' A 142 0.21 0.50 1 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.815 _refine_ls_shell.d_res_low 2.887 _refine_ls_shell.number_reflns_R_work 54 _refine_ls_shell.R_factor_R_work 0.425 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.899 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 3 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details 1 1 1 A DG 1 . A DG 7 . A DG 1 A DG 7 0 ? 1 2 1 B DG 1 . B DG 7 . B DG 1 B DG 7 0 ? # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? _struct_ncs_ens.point_group ? # _database_PDB_matrix.entry_id 1S9B _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1S9B _struct.title 'Crystal Structure Analysis of the B-DNA GAATTCG' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1S9B _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DOUBLE HELIX, CUBIC DNA, NICKEL, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1S9B _struct_ref.pdbx_db_accession 1S9B _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1S9B A 1 ? 7 ? 1S9B 1 ? 7 ? 1 7 2 1 1S9B B 1 ? 7 ? 1S9B 1 ? 7 ? 1 7 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 1 N7 ? ? ? 1_555 C NI . NI ? ? A DG 1 A NI 101 1_555 ? ? ? ? ? ? ? 2.042 ? ? metalc2 metalc ? ? A DG 7 N7 ? ? ? 1_555 D NI . NI ? ? A DG 7 A NI 103 1_555 ? ? ? ? ? ? ? 2.031 ? ? metalc3 metalc ? ? C NI . NI ? ? ? 1_555 G HOH . O ? ? A NI 101 A HOH 102 1_555 ? ? ? ? ? ? ? 2.018 ? ? metalc4 metalc ? ? C NI . NI ? ? ? 1_555 G HOH . O ? ? A NI 101 A HOH 110 1_555 ? ? ? ? ? ? ? 1.973 ? ? metalc5 metalc ? ? C NI . NI ? ? ? 1_555 G HOH . O ? ? A NI 101 A HOH 111 1_555 ? ? ? ? ? ? ? 1.994 ? ? metalc6 metalc ? ? C NI . NI ? ? ? 1_555 G HOH . O ? ? A NI 101 A HOH 112 1_555 ? ? ? ? ? ? ? 1.999 ? ? metalc7 metalc ? ? C NI . NI ? ? ? 1_555 G HOH . O ? ? A NI 101 A HOH 113 1_555 ? ? ? ? ? ? ? 2.016 ? ? metalc8 metalc ? ? D NI . NI ? ? ? 1_555 G HOH . O ? ? A NI 103 A HOH 109 1_555 ? ? ? ? ? ? ? 2.018 ? ? metalc9 metalc ? ? D NI . NI ? ? ? 1_555 G HOH . O ? ? A NI 103 A HOH 119 1_555 ? ? ? ? ? ? ? 2.010 ? ? metalc10 metalc ? ? D NI . NI ? ? ? 1_555 G HOH . O ? ? A NI 103 A HOH 120 1_555 ? ? ? ? ? ? ? 2.025 ? ? metalc11 metalc ? ? D NI . NI ? ? ? 1_555 G HOH . O ? ? A NI 103 A HOH 121 1_555 ? ? ? ? ? ? ? 2.013 ? ? metalc12 metalc ? ? D NI . NI ? ? ? 1_555 G HOH . O ? ? A NI 103 A HOH 122 1_555 ? ? ? ? ? ? ? 2.015 ? ? metalc13 metalc ? ? B DG 1 N7 ? ? ? 1_555 E NI . NI ? ? B DG 1 B NI 102 1_555 ? ? ? ? ? ? ? 2.001 ? ? metalc14 metalc ? ? B DG 1 O6 ? ? ? 1_555 E NI . NI ? ? B DG 1 B NI 102 1_555 ? ? ? ? ? ? ? 2.773 ? ? metalc15 metalc ? ? B DG 7 N7 ? ? ? 1_555 F NI . NI ? ? B DG 7 B NI 104 1_555 ? ? ? ? ? ? ? 1.979 ? ? metalc16 metalc ? ? H HOH . O ? ? ? 1_555 F NI . NI ? ? B HOH 101 B NI 104 1_555 ? ? ? ? ? ? ? 2.012 ? ? metalc17 metalc ? ? E NI . NI ? ? ? 1_555 H HOH . O ? ? B NI 102 B HOH 114 1_555 ? ? ? ? ? ? ? 2.009 ? ? metalc18 metalc ? ? E NI . NI ? ? ? 1_555 H HOH . O ? ? B NI 102 B HOH 115 1_555 ? ? ? ? ? ? ? 2.000 ? ? metalc19 metalc ? ? E NI . NI ? ? ? 1_555 H HOH . O ? ? B NI 102 B HOH 116 1_555 ? ? ? ? ? ? ? 1.994 ? ? metalc20 metalc ? ? E NI . NI ? ? ? 1_555 H HOH . O ? ? B NI 102 B HOH 117 1_555 ? ? ? ? ? ? ? 2.026 ? ? metalc21 metalc ? ? E NI . NI ? ? ? 1_555 H HOH . O ? ? B NI 102 B HOH 118 1_555 ? ? ? ? ? ? ? 2.025 ? ? metalc22 metalc ? ? H HOH . O ? ? ? 1_555 F NI . NI ? ? B HOH 103 B NI 104 1_555 ? ? ? ? ? ? ? 2.019 ? ? metalc23 metalc ? ? F NI . NI ? ? ? 1_555 H HOH . O ? ? B NI 104 B HOH 123 1_555 ? ? ? ? ? ? ? 2.001 ? ? metalc24 metalc ? ? F NI . NI ? ? ? 1_555 H HOH . O ? ? B NI 104 B HOH 124 1_555 ? ? ? ? ? ? ? 1.994 ? ? metalc25 metalc ? ? F NI . NI ? ? ? 1_555 H HOH . O ? ? B NI 104 B HOH 125 1_555 ? ? ? ? ? ? ? 1.979 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 1 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 1 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 1 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 2 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 2 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 3 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 3 B DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 4 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 4 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 5 B DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 5 B DA 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 6 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 6 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 6 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 1 ? A DG 1 ? 1_555 NI ? C NI . ? A NI 101 ? 1_555 O ? G HOH . ? A HOH 102 ? 1_555 142.3 ? 2 N7 ? A DG 1 ? A DG 1 ? 1_555 NI ? C NI . ? A NI 101 ? 1_555 O ? G HOH . ? A HOH 110 ? 1_555 94.3 ? 3 O ? G HOH . ? A HOH 102 ? 1_555 NI ? C NI . ? A NI 101 ? 1_555 O ? G HOH . ? A HOH 110 ? 1_555 84.6 ? 4 N7 ? A DG 1 ? A DG 1 ? 1_555 NI ? C NI . ? A NI 101 ? 1_555 O ? G HOH . ? A HOH 111 ? 1_555 59.5 ? 5 O ? G HOH . ? A HOH 102 ? 1_555 NI ? C NI . ? A NI 101 ? 1_555 O ? G HOH . ? A HOH 111 ? 1_555 150.0 ? 6 O ? G HOH . ? A HOH 110 ? 1_555 NI ? C NI . ? A NI 101 ? 1_555 O ? G HOH . ? A HOH 111 ? 1_555 71.0 ? 7 N7 ? A DG 1 ? A DG 1 ? 1_555 NI ? C NI . ? A NI 101 ? 1_555 O ? G HOH . ? A HOH 112 ? 1_555 59.7 ? 8 O ? G HOH . ? A HOH 102 ? 1_555 NI ? C NI . ? A NI 101 ? 1_555 O ? G HOH . ? A HOH 112 ? 1_555 132.9 ? 9 O ? G HOH . ? A HOH 110 ? 1_555 NI ? C NI . ? A NI 101 ? 1_555 O ? G HOH . ? A HOH 112 ? 1_555 142.3 ? 10 O ? G HOH . ? A HOH 111 ? 1_555 NI ? C NI . ? A NI 101 ? 1_555 O ? G HOH . ? A HOH 112 ? 1_555 72.1 ? 11 N7 ? A DG 1 ? A DG 1 ? 1_555 NI ? C NI . ? A NI 101 ? 1_555 O ? G HOH . ? A HOH 113 ? 1_555 134.0 ? 12 O ? G HOH . ? A HOH 102 ? 1_555 NI ? C NI . ? A NI 101 ? 1_555 O ? G HOH . ? A HOH 113 ? 1_555 82.9 ? 13 O ? G HOH . ? A HOH 110 ? 1_555 NI ? C NI . ? A NI 101 ? 1_555 O ? G HOH . ? A HOH 113 ? 1_555 99.5 ? 14 O ? G HOH . ? A HOH 111 ? 1_555 NI ? C NI . ? A NI 101 ? 1_555 O ? G HOH . ? A HOH 113 ? 1_555 84.1 ? 15 O ? G HOH . ? A HOH 112 ? 1_555 NI ? C NI . ? A NI 101 ? 1_555 O ? G HOH . ? A HOH 113 ? 1_555 84.1 ? 16 N7 ? A DG 7 ? A DG 7 ? 1_555 NI ? D NI . ? A NI 103 ? 1_555 O ? G HOH . ? A HOH 109 ? 1_555 66.2 ? 17 N7 ? A DG 7 ? A DG 7 ? 1_555 NI ? D NI . ? A NI 103 ? 1_555 O ? G HOH . ? A HOH 119 ? 1_555 153.1 ? 18 O ? G HOH . ? A HOH 109 ? 1_555 NI ? D NI . ? A NI 103 ? 1_555 O ? G HOH . ? A HOH 119 ? 1_555 129.7 ? 19 N7 ? A DG 7 ? A DG 7 ? 1_555 NI ? D NI . ? A NI 103 ? 1_555 O ? G HOH . ? A HOH 120 ? 1_555 82.4 ? 20 O ? G HOH . ? A HOH 109 ? 1_555 NI ? D NI . ? A NI 103 ? 1_555 O ? G HOH . ? A HOH 120 ? 1_555 146.9 ? 21 O ? G HOH . ? A HOH 119 ? 1_555 NI ? D NI . ? A NI 103 ? 1_555 O ? G HOH . ? A HOH 120 ? 1_555 83.3 ? 22 N7 ? A DG 7 ? A DG 7 ? 1_555 NI ? D NI . ? A NI 103 ? 1_555 O ? G HOH . ? A HOH 121 ? 1_555 117.1 ? 23 O ? G HOH . ? A HOH 109 ? 1_555 NI ? D NI . ? A NI 103 ? 1_555 O ? G HOH . ? A HOH 121 ? 1_555 101.3 ? 24 O ? G HOH . ? A HOH 119 ? 1_555 NI ? D NI . ? A NI 103 ? 1_555 O ? G HOH . ? A HOH 121 ? 1_555 83.6 ? 25 O ? G HOH . ? A HOH 120 ? 1_555 NI ? D NI . ? A NI 103 ? 1_555 O ? G HOH . ? A HOH 121 ? 1_555 83.2 ? 26 N7 ? A DG 7 ? A DG 7 ? 1_555 NI ? D NI . ? A NI 103 ? 1_555 O ? G HOH . ? A HOH 122 ? 1_555 63.2 ? 27 O ? G HOH . ? A HOH 109 ? 1_555 NI ? D NI . ? A NI 103 ? 1_555 O ? G HOH . ? A HOH 122 ? 1_555 83.1 ? 28 O ? G HOH . ? A HOH 119 ? 1_555 NI ? D NI . ? A NI 103 ? 1_555 O ? G HOH . ? A HOH 122 ? 1_555 94.7 ? 29 O ? G HOH . ? A HOH 120 ? 1_555 NI ? D NI . ? A NI 103 ? 1_555 O ? G HOH . ? A HOH 122 ? 1_555 92.3 ? 30 O ? G HOH . ? A HOH 121 ? 1_555 NI ? D NI . ? A NI 103 ? 1_555 O ? G HOH . ? A HOH 122 ? 1_555 175.3 ? 31 N7 ? B DG 1 ? B DG 1 ? 1_555 NI ? E NI . ? B NI 102 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 71.8 ? 32 N7 ? B DG 1 ? B DG 1 ? 1_555 NI ? E NI . ? B NI 102 ? 1_555 O ? H HOH . ? B HOH 114 ? 1_555 124.2 ? 33 O6 ? B DG 1 ? B DG 1 ? 1_555 NI ? E NI . ? B NI 102 ? 1_555 O ? H HOH . ? B HOH 114 ? 1_555 54.9 ? 34 N7 ? B DG 1 ? B DG 1 ? 1_555 NI ? E NI . ? B NI 102 ? 1_555 O ? H HOH . ? B HOH 115 ? 1_555 125.4 ? 35 O6 ? B DG 1 ? B DG 1 ? 1_555 NI ? E NI . ? B NI 102 ? 1_555 O ? H HOH . ? B HOH 115 ? 1_555 121.0 ? 36 O ? H HOH . ? B HOH 114 ? 1_555 NI ? E NI . ? B NI 102 ? 1_555 O ? H HOH . ? B HOH 115 ? 1_555 97.6 ? 37 N7 ? B DG 1 ? B DG 1 ? 1_555 NI ? E NI . ? B NI 102 ? 1_555 O ? H HOH . ? B HOH 116 ? 1_555 68.0 ? 38 O6 ? B DG 1 ? B DG 1 ? 1_555 NI ? E NI . ? B NI 102 ? 1_555 O ? H HOH . ? B HOH 116 ? 1_555 78.1 ? 39 O ? H HOH . ? B HOH 114 ? 1_555 NI ? E NI . ? B NI 102 ? 1_555 O ? H HOH . ? B HOH 116 ? 1_555 84.9 ? 40 O ? H HOH . ? B HOH 115 ? 1_555 NI ? E NI . ? B NI 102 ? 1_555 O ? H HOH . ? B HOH 116 ? 1_555 158.2 ? 41 N7 ? B DG 1 ? B DG 1 ? 1_555 NI ? E NI . ? B NI 102 ? 1_555 O ? H HOH . ? B HOH 117 ? 1_555 145.4 ? 42 O6 ? B DG 1 ? B DG 1 ? 1_555 NI ? E NI . ? B NI 102 ? 1_555 O ? H HOH . ? B HOH 117 ? 1_555 138.2 ? 43 O ? H HOH . ? B HOH 114 ? 1_555 NI ? E NI . ? B NI 102 ? 1_555 O ? H HOH . ? B HOH 117 ? 1_555 83.4 ? 44 O ? H HOH . ? B HOH 115 ? 1_555 NI ? E NI . ? B NI 102 ? 1_555 O ? H HOH . ? B HOH 117 ? 1_555 61.3 ? 45 O ? H HOH . ? B HOH 116 ? 1_555 NI ? E NI . ? B NI 102 ? 1_555 O ? H HOH . ? B HOH 117 ? 1_555 97.7 ? 46 N7 ? B DG 1 ? B DG 1 ? 1_555 NI ? E NI . ? B NI 102 ? 1_555 O ? H HOH . ? B HOH 118 ? 1_555 65.9 ? 47 O6 ? B DG 1 ? B DG 1 ? 1_555 NI ? E NI . ? B NI 102 ? 1_555 O ? H HOH . ? B HOH 118 ? 1_555 137.7 ? 48 O ? H HOH . ? B HOH 114 ? 1_555 NI ? E NI . ? B NI 102 ? 1_555 O ? H HOH . ? B HOH 118 ? 1_555 163.2 ? 49 O ? H HOH . ? B HOH 115 ? 1_555 NI ? E NI . ? B NI 102 ? 1_555 O ? H HOH . ? B HOH 118 ? 1_555 84.0 ? 50 O ? H HOH . ? B HOH 116 ? 1_555 NI ? E NI . ? B NI 102 ? 1_555 O ? H HOH . ? B HOH 118 ? 1_555 87.5 ? 51 O ? H HOH . ? B HOH 117 ? 1_555 NI ? E NI . ? B NI 102 ? 1_555 O ? H HOH . ? B HOH 118 ? 1_555 82.7 ? 52 N7 ? B DG 7 ? B DG 7 ? 1_555 NI ? F NI . ? B NI 104 ? 1_555 O ? H HOH . ? B HOH 101 ? 1_555 89.6 ? 53 N7 ? B DG 7 ? B DG 7 ? 1_555 NI ? F NI . ? B NI 104 ? 1_555 O ? H HOH . ? B HOH 103 ? 1_555 114.5 ? 54 O ? H HOH . ? B HOH 101 ? 1_555 NI ? F NI . ? B NI 104 ? 1_555 O ? H HOH . ? B HOH 103 ? 1_555 83.4 ? 55 N7 ? B DG 7 ? B DG 7 ? 1_555 NI ? F NI . ? B NI 104 ? 1_555 O ? H HOH . ? B HOH 123 ? 1_555 57.8 ? 56 O ? H HOH . ? B HOH 101 ? 1_555 NI ? F NI . ? B NI 104 ? 1_555 O ? H HOH . ? B HOH 123 ? 1_555 113.7 ? 57 O ? H HOH . ? B HOH 103 ? 1_555 NI ? F NI . ? B NI 104 ? 1_555 O ? H HOH . ? B HOH 123 ? 1_555 159.8 ? 58 N7 ? B DG 7 ? B DG 7 ? 1_555 NI ? F NI . ? B NI 104 ? 1_555 O ? H HOH . ? B HOH 124 ? 1_555 134.8 ? 59 O ? H HOH . ? B HOH 101 ? 1_555 NI ? F NI . ? B NI 104 ? 1_555 O ? H HOH . ? B HOH 124 ? 1_555 84.8 ? 60 O ? H HOH . ? B HOH 103 ? 1_555 NI ? F NI . ? B NI 104 ? 1_555 O ? H HOH . ? B HOH 124 ? 1_555 109.3 ? 61 O ? H HOH . ? B HOH 123 ? 1_555 NI ? F NI . ? B NI 104 ? 1_555 O ? H HOH . ? B HOH 124 ? 1_555 83.9 ? 62 N7 ? B DG 7 ? B DG 7 ? 1_555 NI ? F NI . ? B NI 104 ? 1_555 O ? H HOH . ? B HOH 125 ? 1_555 85.5 ? 63 O ? H HOH . ? B HOH 101 ? 1_555 NI ? F NI . ? B NI 104 ? 1_555 O ? H HOH . ? B HOH 125 ? 1_555 162.0 ? 64 O ? H HOH . ? B HOH 103 ? 1_555 NI ? F NI . ? B NI 104 ? 1_555 O ? H HOH . ? B HOH 125 ? 1_555 114.4 ? 65 O ? H HOH . ? B HOH 123 ? 1_555 NI ? F NI . ? B NI 104 ? 1_555 O ? H HOH . ? B HOH 125 ? 1_555 49.5 ? 66 O ? H HOH . ? B HOH 124 ? 1_555 NI ? F NI . ? B NI 104 ? 1_555 O ? H HOH . ? B HOH 125 ? 1_555 86.4 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NI 101 ? 6 'BINDING SITE FOR RESIDUE NI A 101' AC2 Software B NI 102 ? 6 'BINDING SITE FOR RESIDUE NI B 102' AC3 Software A NI 103 ? 6 'BINDING SITE FOR RESIDUE NI A 103' AC4 Software B NI 104 ? 6 'BINDING SITE FOR RESIDUE NI B 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DG A 1 ? DG A 1 . ? 1_555 ? 2 AC1 6 HOH G . ? HOH A 102 . ? 1_555 ? 3 AC1 6 HOH G . ? HOH A 110 . ? 1_555 ? 4 AC1 6 HOH G . ? HOH A 111 . ? 1_555 ? 5 AC1 6 HOH G . ? HOH A 112 . ? 1_555 ? 6 AC1 6 HOH G . ? HOH A 113 . ? 1_555 ? 7 AC2 6 DG B 1 ? DG B 1 . ? 1_555 ? 8 AC2 6 HOH H . ? HOH B 114 . ? 1_555 ? 9 AC2 6 HOH H . ? HOH B 115 . ? 1_555 ? 10 AC2 6 HOH H . ? HOH B 116 . ? 1_555 ? 11 AC2 6 HOH H . ? HOH B 117 . ? 1_555 ? 12 AC2 6 HOH H . ? HOH B 118 . ? 1_555 ? 13 AC3 6 DG A 7 ? DG A 7 . ? 1_555 ? 14 AC3 6 HOH G . ? HOH A 109 . ? 1_555 ? 15 AC3 6 HOH G . ? HOH A 119 . ? 1_555 ? 16 AC3 6 HOH G . ? HOH A 120 . ? 1_555 ? 17 AC3 6 HOH G . ? HOH A 121 . ? 1_555 ? 18 AC3 6 HOH G . ? HOH A 122 . ? 1_555 ? 19 AC4 6 DG B 7 ? DG B 7 . ? 1_555 ? 20 AC4 6 HOH H . ? HOH B 101 . ? 1_555 ? 21 AC4 6 HOH H . ? HOH B 103 . ? 1_555 ? 22 AC4 6 HOH H . ? HOH B 123 . ? 1_555 ? 23 AC4 6 HOH H . ? HOH B 124 . ? 1_555 ? 24 AC4 6 HOH H . ? HOH B 125 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DA 2 ? ? "C3'" A DA 2 ? ? 1.374 1.419 -0.045 0.006 N 2 1 "O3'" A DA 3 ? ? "C3'" A DA 3 ? ? 1.363 1.419 -0.056 0.006 N 3 1 "O3'" A DT 4 ? ? "C3'" A DT 4 ? ? 1.375 1.419 -0.044 0.006 N 4 1 N3 B DA 2 ? ? C4 B DA 2 ? ? 1.296 1.344 -0.048 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.60 108.30 3.30 0.30 N 2 1 C5 A DG 1 ? ? C6 A DG 1 ? ? N1 A DG 1 ? ? 114.93 111.50 3.43 0.50 N 3 1 "O5'" A DA 2 ? ? "C5'" A DA 2 ? ? "C4'" A DA 2 ? ? 99.99 109.40 -9.41 0.80 N 4 1 "C3'" A DA 2 ? ? "O3'" A DA 2 ? ? P A DA 3 ? ? 111.34 119.70 -8.36 1.20 Y 5 1 "O5'" A DA 3 ? ? "C5'" A DA 3 ? ? "C4'" A DA 3 ? ? 103.23 109.40 -6.17 0.80 N 6 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? "C2'" A DA 3 ? ? 97.98 105.90 -7.92 0.80 N 7 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 100.62 108.00 -7.38 0.70 N 8 1 C2 A DT 5 ? ? N3 A DT 5 ? ? C4 A DT 5 ? ? 123.30 127.20 -3.90 0.60 N 9 1 N3 A DT 5 ? ? C4 A DT 5 ? ? O4 A DT 5 ? ? 123.95 119.90 4.05 0.60 N 10 1 C5 A DT 5 ? ? C4 A DT 5 ? ? O4 A DT 5 ? ? 119.71 124.90 -5.19 0.70 N 11 1 N3 A DC 6 ? ? C4 A DC 6 ? ? N4 A DC 6 ? ? 111.97 118.00 -6.03 0.70 N 12 1 C2 A DC 6 ? ? N1 A DC 6 ? ? "C1'" A DC 6 ? ? 112.15 118.80 -6.65 1.10 N 13 1 C4 A DG 7 ? ? C5 A DG 7 ? ? N7 A DG 7 ? ? 113.72 110.80 2.92 0.40 N 14 1 C5 A DG 7 ? ? N7 A DG 7 ? ? C8 A DG 7 ? ? 100.56 104.30 -3.74 0.50 N 15 1 N1 A DG 7 ? ? C6 A DG 7 ? ? O6 A DG 7 ? ? 124.14 119.90 4.24 0.60 N 16 1 C5 A DG 7 ? ? C6 A DG 7 ? ? O6 A DG 7 ? ? 122.41 128.60 -6.19 0.60 N 17 1 C6 B DG 1 ? ? N1 B DG 1 ? ? C2 B DG 1 ? ? 121.44 125.10 -3.66 0.60 N 18 1 N1 B DG 1 ? ? C6 B DG 1 ? ? O6 B DG 1 ? ? 124.43 119.90 4.53 0.60 N 19 1 C5 B DG 1 ? ? C6 B DG 1 ? ? O6 B DG 1 ? ? 122.03 128.60 -6.57 0.60 N 20 1 "O5'" B DA 2 ? ? "C5'" B DA 2 ? ? "C4'" B DA 2 ? ? 103.49 109.40 -5.91 0.80 N 21 1 "O4'" B DA 2 ? ? "C4'" B DA 2 ? ? "C3'" B DA 2 ? ? 101.66 104.50 -2.84 0.40 N 22 1 "O4'" B DA 2 ? ? "C1'" B DA 2 ? ? "C2'" B DA 2 ? ? 100.15 105.90 -5.75 0.80 N 23 1 C6 B DA 2 ? ? N1 B DA 2 ? ? C2 B DA 2 ? ? 114.67 118.60 -3.93 0.60 N 24 1 "O4'" B DA 3 ? ? "C1'" B DA 3 ? ? "C2'" B DA 3 ? ? 97.96 105.90 -7.94 0.80 N 25 1 "O4'" B DA 3 ? ? "C1'" B DA 3 ? ? N9 B DA 3 ? ? 101.13 108.00 -6.87 0.70 N 26 1 "O4'" B DT 4 ? ? "C1'" B DT 4 ? ? "C2'" B DT 4 ? ? 100.33 105.90 -5.57 0.80 N 27 1 N1 B DT 4 ? ? C2 B DT 4 ? ? N3 B DT 4 ? ? 118.70 114.60 4.10 0.60 N 28 1 C2 B DT 4 ? ? N3 B DT 4 ? ? C4 B DT 4 ? ? 122.96 127.20 -4.24 0.60 N 29 1 C5 B DT 4 ? ? C6 B DT 4 ? ? N1 B DT 4 ? ? 118.91 123.70 -4.79 0.60 N 30 1 C5 B DT 4 ? ? C4 B DT 4 ? ? O4 B DT 4 ? ? 120.41 124.90 -4.49 0.70 N 31 1 C4 B DT 4 ? ? C5 B DT 4 ? ? C7 B DT 4 ? ? 114.04 119.00 -4.96 0.60 N 32 1 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 110.46 108.30 2.16 0.30 N 33 1 C5 B DG 7 ? ? C6 B DG 7 ? ? O6 B DG 7 ? ? 124.59 128.60 -4.01 0.60 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 NI NI NI N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 1S9B _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 6 1_555 0.242 -0.287 0.025 -1.382 1.655 -3.104 1 A_DG1:DC6_B A 1 ? B 6 ? 19 1 1 A DA 2 1_555 B DT 5 1_555 0.769 -0.286 0.099 0.839 -6.169 -9.086 2 A_DA2:DT5_B A 2 ? B 5 ? 20 1 1 A DA 3 1_555 B DT 4 1_555 0.342 -0.333 0.039 2.506 -7.753 -5.375 3 A_DA3:DT4_B A 3 ? B 4 ? 20 1 1 A DT 4 1_555 B DA 3 1_555 -0.462 -0.328 0.088 -0.970 -8.369 -6.624 4 A_DT4:DA3_B A 4 ? B 3 ? 20 1 1 A DT 5 1_555 B DA 2 1_555 -0.742 -0.323 0.161 0.368 -7.883 -8.876 5 A_DT5:DA2_B A 5 ? B 2 ? 20 1 1 A DC 6 1_555 B DG 1 1_555 -0.645 -0.209 0.094 1.308 2.333 -3.684 6 A_DC6:DG1_B A 6 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 6 1_555 A DA 2 1_555 B DT 5 1_555 -0.910 0.631 3.378 -5.440 3.318 34.859 0.519 0.645 3.519 5.482 8.988 35.419 1 AA_DG1DA2:DT5DC6_BB A 1 ? B 6 ? A 2 ? B 5 ? 1 A DA 2 1_555 B DT 5 1_555 A DA 3 1_555 B DT 4 1_555 -0.111 -0.462 3.279 -0.047 0.575 35.734 -0.836 0.175 3.271 0.938 0.076 35.738 2 AA_DA2DA3:DT4DT5_BB A 2 ? B 5 ? A 3 ? B 4 ? 1 A DA 3 1_555 B DT 4 1_555 A DT 4 1_555 B DA 3 1_555 -0.127 -0.705 3.348 -1.078 2.198 25.980 -2.169 -0.017 3.280 4.876 2.392 26.093 3 AA_DA3DT4:DA3DT4_BB A 3 ? B 4 ? A 4 ? B 3 ? 1 A DT 4 1_555 B DA 3 1_555 A DT 5 1_555 B DA 2 1_555 0.011 -0.490 3.226 -0.989 -0.034 36.587 -0.775 -0.151 3.225 -0.053 1.574 36.600 4 AA_DT4DT5:DA2DA3_BB A 4 ? B 3 ? A 5 ? B 2 ? 1 A DT 5 1_555 B DA 2 1_555 A DC 6 1_555 B DG 1 1_555 0.773 0.662 3.478 4.037 2.175 32.928 0.764 -0.619 3.580 3.814 -7.079 33.237 5 AA_DT5DC6:DG1DA2_BB A 5 ? B 2 ? A 6 ? B 1 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details 'ideal B-DNA' # _atom_sites.entry_id 1S9B _atom_sites.fract_transf_matrix[1][1] 0.014111 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014111 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014111 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NI O P # loop_