data_1S9L # _entry.id 1S9L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1S9L pdb_00001s9l 10.2210/pdb1s9l/pdb RCSB RCSB021539 ? ? WWPDB D_1000021539 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-06-29 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1S9L _pdbx_database_status.recvd_initial_deposition_date 2004-02-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Randazzo, A.' 1 'Esposito, V.' 2 'Ohlenschlager, O.' 3 'Ramachandran, R.' 4 'Mayola, L.' 5 # _citation.id primary _citation.title 'NMR solution structure of a parallel LNA quadruplex.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 32 _citation.page_first 3083 _citation.page_last 3092 _citation.year 2004 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15181173 _citation.pdbx_database_id_DOI 10.1093/nar/gkh629 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Randazzo, A.' 1 ? primary 'Esposito, V.' 2 ? primary 'Ohlenschlager, O.' 3 ? primary 'Ramachandran, R.' 4 ? primary 'Mayola, L.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-((TLN)P*(LCG)P*(LCG)P*(LCG)P*(TLN))-3'" _entity.formula_weight 1691.098 _entity.pdbx_number_of_molecules 4 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(TLN)(LCG)(LCG)(LCG)(TLN)' _entity_poly.pdbx_seq_one_letter_code_can UGGGU _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TLN n 1 2 LCG n 1 3 LCG n 1 4 LCG n 1 5 TLN n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence contains all LNA residues' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight LCG 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H14 N5 O8 P' 375.231 TLN 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H15 N2 O9 P' 350.219 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TLN 1 1 1 TLN TLN A . n A 1 2 LCG 2 2 2 LCG LCG A . n A 1 3 LCG 3 3 3 LCG LCG A . n A 1 4 LCG 4 4 4 LCG LCG A . n A 1 5 TLN 5 5 5 TLN TLN A . n B 1 1 TLN 1 6 6 TLN TLN B . n B 1 2 LCG 2 7 7 LCG LCG B . n B 1 3 LCG 3 8 8 LCG LCG B . n B 1 4 LCG 4 9 9 LCG LCG B . n B 1 5 TLN 5 10 10 TLN TLN B . n C 1 1 TLN 1 11 11 TLN TLN C . n C 1 2 LCG 2 12 12 LCG LCG C . n C 1 3 LCG 3 13 13 LCG LCG C . n C 1 4 LCG 4 14 14 LCG LCG C . n C 1 5 TLN 5 15 15 TLN TLN C . n D 1 1 TLN 1 16 16 TLN TLN D . n D 1 2 LCG 2 17 17 LCG LCG D . n D 1 3 LCG 3 18 18 LCG LCG D . n D 1 4 LCG 4 19 19 LCG LCG D . n D 1 5 TLN 5 20 20 TLN TLN D . n # _cell.entry_id 1S9L _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S9L _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1S9L _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.density_Matthews ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1S9L _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1S9L _struct.title 'NMR Solution Structure of a Parallel LNA Quadruplex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1S9L _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'LNA, QUADRUPLEX, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1S9L _struct_ref.pdbx_db_accession 1S9L _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1S9L A 1 ? 5 ? 1S9L 1 ? 5 ? 1 5 2 1 1S9L B 1 ? 5 ? 1S9L 6 ? 10 ? 6 10 3 1 1S9L C 1 ? 5 ? 1S9L 11 ? 15 ? 11 15 4 1 1S9L D 1 ? 5 ? 1S9L 16 ? 20 ? 16 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A TLN 1 "O3'" ? ? ? 1_555 A LCG 2 P ? ? A TLN 1 A LCG 2 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale2 covale both ? A LCG 2 "O3'" ? ? ? 1_555 A LCG 3 P ? ? A LCG 2 A LCG 3 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale3 covale both ? A LCG 3 "O3'" ? ? ? 1_555 A LCG 4 P ? ? A LCG 3 A LCG 4 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale4 covale both ? A LCG 4 "O3'" ? ? ? 1_555 A TLN 5 P ? ? A LCG 4 A TLN 5 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale5 covale both ? B TLN 1 "O3'" ? ? ? 1_555 B LCG 2 P ? ? B TLN 6 B LCG 7 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale6 covale both ? B LCG 2 "O3'" ? ? ? 1_555 B LCG 3 P ? ? B LCG 7 B LCG 8 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale7 covale both ? B LCG 3 "O3'" ? ? ? 1_555 B LCG 4 P ? ? B LCG 8 B LCG 9 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale8 covale both ? B LCG 4 "O3'" ? ? ? 1_555 B TLN 5 P ? ? B LCG 9 B TLN 10 1_555 ? ? ? ? ? ? ? 1.622 ? ? covale9 covale both ? C TLN 1 "O3'" ? ? ? 1_555 C LCG 2 P ? ? C TLN 11 C LCG 12 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale10 covale both ? C LCG 2 "O3'" ? ? ? 1_555 C LCG 3 P ? ? C LCG 12 C LCG 13 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale11 covale both ? C LCG 3 "O3'" ? ? ? 1_555 C LCG 4 P ? ? C LCG 13 C LCG 14 1_555 ? ? ? ? ? ? ? 1.619 ? ? covale12 covale both ? C LCG 4 "O3'" ? ? ? 1_555 C TLN 5 P ? ? C LCG 14 C TLN 15 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale13 covale both ? D TLN 1 "O3'" ? ? ? 1_555 D LCG 2 P ? ? D TLN 16 D LCG 17 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale14 covale both ? D LCG 2 "O3'" ? ? ? 1_555 D LCG 3 P ? ? D LCG 17 D LCG 18 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale15 covale both ? D LCG 3 "O3'" ? ? ? 1_555 D LCG 4 P ? ? D LCG 18 D LCG 19 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale16 covale both ? D LCG 4 "O3'" ? ? ? 1_555 D TLN 5 P ? ? D LCG 19 D TLN 20 1_555 ? ? ? ? ? ? ? 1.617 ? ? hydrog1 hydrog ? ? A LCG 2 N7 ? ? ? 1_555 B LCG 2 N2 ? ? A LCG 2 B LCG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A LCG 2 O6 ? ? ? 1_555 B LCG 2 N1 ? ? A LCG 2 B LCG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A LCG 2 N1 ? ? ? 1_555 C LCG 2 O6 ? ? A LCG 2 C LCG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A LCG 2 N2 ? ? ? 1_555 C LCG 2 N7 ? ? A LCG 2 C LCG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A LCG 3 N7 ? ? ? 1_555 B LCG 3 N2 ? ? A LCG 3 B LCG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A LCG 3 O6 ? ? ? 1_555 B LCG 3 N1 ? ? A LCG 3 B LCG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A LCG 3 N1 ? ? ? 1_555 C LCG 3 O6 ? ? A LCG 3 C LCG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A LCG 3 N2 ? ? ? 1_555 C LCG 3 N7 ? ? A LCG 3 C LCG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A LCG 4 N7 ? ? ? 1_555 B LCG 4 N2 ? ? A LCG 4 B LCG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A LCG 4 O6 ? ? ? 1_555 B LCG 4 N1 ? ? A LCG 4 B LCG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A LCG 4 N1 ? ? ? 1_555 C LCG 4 O6 ? ? A LCG 4 C LCG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A LCG 4 N2 ? ? ? 1_555 C LCG 4 N7 ? ? A LCG 4 C LCG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A TLN 5 O4 ? ? ? 1_555 B TLN 5 N3 ? ? A TLN 5 B TLN 10 1_555 ? ? ? ? ? ? 'TLN-TLN MISPAIR' ? ? ? hydrog14 hydrog ? ? B LCG 2 N7 ? ? ? 1_555 D LCG 2 N2 ? ? B LCG 7 D LCG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? B LCG 2 O6 ? ? ? 1_555 D LCG 2 N1 ? ? B LCG 7 D LCG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? B LCG 3 N7 ? ? ? 1_555 D LCG 3 N2 ? ? B LCG 8 D LCG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? B LCG 3 O6 ? ? ? 1_555 D LCG 3 N1 ? ? B LCG 8 D LCG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? B LCG 4 N7 ? ? ? 1_555 D LCG 4 N2 ? ? B LCG 9 D LCG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? B LCG 4 O6 ? ? ? 1_555 D LCG 4 N1 ? ? B LCG 9 D LCG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? C LCG 2 N1 ? ? ? 1_555 D LCG 2 O6 ? ? C LCG 12 D LCG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? C LCG 2 N2 ? ? ? 1_555 D LCG 2 N7 ? ? C LCG 12 D LCG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? C LCG 3 N1 ? ? ? 1_555 D LCG 3 O6 ? ? C LCG 13 D LCG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? C LCG 3 N2 ? ? ? 1_555 D LCG 3 N7 ? ? C LCG 13 D LCG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? C LCG 4 N1 ? ? ? 1_555 D LCG 4 O6 ? ? C LCG 14 D LCG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? C LCG 4 N2 ? ? ? 1_555 D LCG 4 N7 ? ? C LCG 14 D LCG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? C TLN 5 N3 ? ? ? 1_555 D TLN 5 O4 ? ? C TLN 15 D TLN 20 1_555 ? ? ? ? ? ? 'TLN-TLN MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A TLN 1 A TLN 1 ? DU ? 2 A LCG 2 A LCG 2 ? DG ? 3 A LCG 3 A LCG 3 ? DG ? 4 A LCG 4 A LCG 4 ? DG ? 5 A TLN 5 A TLN 5 ? DU ? 6 B TLN 1 B TLN 6 ? DU ? 7 B LCG 2 B LCG 7 ? DG ? 8 B LCG 3 B LCG 8 ? DG ? 9 B LCG 4 B LCG 9 ? DG ? 10 B TLN 5 B TLN 10 ? DU ? 11 C TLN 1 C TLN 11 ? DU ? 12 C LCG 2 C LCG 12 ? DG ? 13 C LCG 3 C LCG 13 ? DG ? 14 C LCG 4 C LCG 14 ? DG ? 15 C TLN 5 C TLN 15 ? DU ? 16 D TLN 1 D TLN 16 ? DU ? 17 D LCG 2 D LCG 17 ? DG ? 18 D LCG 3 D LCG 18 ? DG ? 19 D LCG 4 D LCG 19 ? DG ? 20 D TLN 5 D TLN 20 ? DU ? # _pdbx_nmr_ensemble.entry_id 1S9L _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1S9L _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 ;1.80 mM, 5'-((TLN)P*(LCG)P*(LCG)P*(LCG)P*(TLN))-3', 10 mM KH2PO4, 70 mM KCl, 0.2 mM EDTA, H2O/D2O 9:1 ; 'H2O/D2O 9:1' 2 ;1.80 mM, 5'-((TLN)P*(LCG)P*(LCG)P*(LCG)P*(TLN))-3', 10 mM KH2PO4, 70 mM KCl, 0.2 mM EDTA, D2O ; D2O # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 300 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 2 1 '2D NOESY' 3 2 1 '2D TOCSY' 4 2 1 '1H-31P 2D COSY' # _pdbx_nmr_details.entry_id 1S9L _pdbx_nmr_details.text 'This structure was determined using standard 2D homonuclear techniques' # _pdbx_nmr_refine.entry_id 1S9L _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ;292 (73 per strand) NOE-derived distance constraints, 48 hydrogen bonds constraints, 36 (9 per strand) dihedral angle restraints. The 20 structures with the lowest CYANA target functions were subjected energy minimization (with no angle constraints) using the conjugate gradient method and the CVFF force field ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal UXNMR 970101 collection Bruker 1 VNMR 6.1/C collection Varian 2 Felix 98 processing Accelrys 3 CYANA 1.0.6 'structure solution' Guentert 4 Discover 98 refinement Accelrys 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal LCG P P N N 1 LCG OP1 O N N 2 LCG "O5'" O N N 3 LCG "C5'" C N N 4 LCG "C3'" C N S 5 LCG "C6'" C N N 6 LCG N9 N Y N 7 LCG C8 C Y N 8 LCG C4 C Y N 9 LCG N7 N Y N 10 LCG C5 C Y N 11 LCG C6 C N N 12 LCG "C2'" C N R 13 LCG O6 O N N 14 LCG "C4'" C N R 15 LCG "C1'" C N R 16 LCG C2 C N N 17 LCG N1 N N N 18 LCG "O4'" O N N 19 LCG OP2 O N N 20 LCG N2 N N N 21 LCG N3 N N N 22 LCG "O2'" O N N 23 LCG "O3'" O N N 24 LCG OP3 O N N 25 LCG "H5'" H N N 26 LCG "H5''" H N N 27 LCG "H3'" H N N 28 LCG "H6'1" H N N 29 LCG "H6'2" H N N 30 LCG H8 H N N 31 LCG "H2'" H N N 32 LCG "H1'" H N N 33 LCG H1 H N N 34 LCG HOP2 H N N 35 LCG H21 H N N 36 LCG H22 H N N 37 LCG "HO3'" H N N 38 LCG HOP3 H N N 39 TLN P P N N 40 TLN OP1 O N N 41 TLN OP2 O N N 42 TLN OP3 O N N 43 TLN "O5'" O N N 44 TLN "C5'" C N N 45 TLN "C4'" C N R 46 TLN "O4'" O N N 47 TLN "C1'" C N R 48 TLN N1 N N N 49 TLN C6 C N N 50 TLN C5 C N N 51 TLN C5M C N N 52 TLN C4 C N N 53 TLN O4 O N N 54 TLN N3 N N N 55 TLN C2 C N N 56 TLN O2 O N N 57 TLN "C3'" C N S 58 TLN "C2'" C N R 59 TLN "O2'" O N N 60 TLN "O3'" O N N 61 TLN "C6'" C N N 62 TLN HOP2 H N N 63 TLN HOP3 H N N 64 TLN "H5'" H N N 65 TLN "H5''" H N N 66 TLN "H1'" H N N 67 TLN H6 H N N 68 TLN H71 H N N 69 TLN H72 H N N 70 TLN H73 H N N 71 TLN H3 H N N 72 TLN "H3'" H N N 73 TLN "H2'" H N N 74 TLN "HO3'" H N N 75 TLN "H6'1" H N N 76 TLN "H6'2" H N N 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal LCG P OP1 doub N N 1 LCG P "O5'" sing N N 2 LCG P OP2 sing N N 3 LCG P OP3 sing N N 4 LCG "O5'" "C5'" sing N N 5 LCG "C5'" "C4'" sing N N 6 LCG "C5'" "H5'" sing N N 7 LCG "C5'" "H5''" sing N N 8 LCG "C3'" "C2'" sing N N 9 LCG "C3'" "C4'" sing N N 10 LCG "C3'" "O3'" sing N N 11 LCG "C3'" "H3'" sing N N 12 LCG "C6'" "C4'" sing N N 13 LCG "C6'" "O2'" sing N N 14 LCG "C6'" "H6'1" sing N N 15 LCG "C6'" "H6'2" sing N N 16 LCG N9 C8 sing Y N 17 LCG N9 C4 sing Y N 18 LCG N9 "C1'" sing N N 19 LCG C8 N7 doub Y N 20 LCG C8 H8 sing N N 21 LCG C4 C5 doub Y N 22 LCG C4 N3 sing N N 23 LCG N7 C5 sing Y N 24 LCG C5 C6 sing N N 25 LCG C6 O6 doub N N 26 LCG C6 N1 sing N N 27 LCG "C2'" "C1'" sing N N 28 LCG "C2'" "O2'" sing N N 29 LCG "C2'" "H2'" sing N N 30 LCG "C4'" "O4'" sing N N 31 LCG "C1'" "O4'" sing N N 32 LCG "C1'" "H1'" sing N N 33 LCG C2 N1 sing N N 34 LCG C2 N2 sing N N 35 LCG C2 N3 doub N N 36 LCG N1 H1 sing N N 37 LCG OP2 HOP2 sing N N 38 LCG N2 H21 sing N N 39 LCG N2 H22 sing N N 40 LCG "O3'" "HO3'" sing N N 41 LCG OP3 HOP3 sing N N 42 TLN P OP1 doub N N 43 TLN P OP2 sing N N 44 TLN P OP3 sing N N 45 TLN P "O5'" sing N N 46 TLN OP2 HOP2 sing N N 47 TLN OP3 HOP3 sing N N 48 TLN "O5'" "C5'" sing N N 49 TLN "C5'" "C4'" sing N N 50 TLN "C5'" "H5'" sing N N 51 TLN "C5'" "H5''" sing N N 52 TLN "C4'" "O4'" sing N N 53 TLN "C4'" "C3'" sing N N 54 TLN "C4'" "C6'" sing N N 55 TLN "O4'" "C1'" sing N N 56 TLN "C1'" N1 sing N N 57 TLN "C1'" "C2'" sing N N 58 TLN "C1'" "H1'" sing N N 59 TLN N1 C6 sing N N 60 TLN N1 C2 sing N N 61 TLN C6 C5 doub N N 62 TLN C6 H6 sing N N 63 TLN C5 C5M sing N N 64 TLN C5 C4 sing N N 65 TLN C5M H71 sing N N 66 TLN C5M H72 sing N N 67 TLN C5M H73 sing N N 68 TLN C4 O4 doub N N 69 TLN C4 N3 sing N N 70 TLN N3 C2 sing N N 71 TLN N3 H3 sing N N 72 TLN C2 O2 doub N N 73 TLN "C3'" "C2'" sing N N 74 TLN "C3'" "O3'" sing N N 75 TLN "C3'" "H3'" sing N N 76 TLN "C2'" "O2'" sing N N 77 TLN "C2'" "H2'" sing N N 78 TLN "O2'" "C6'" sing N N 79 TLN "O3'" "HO3'" sing N N 80 TLN "C6'" "H6'1" sing N N 81 TLN "C6'" "H6'2" sing N N 82 # _ndb_struct_conf_na.entry_id 1S9L _ndb_struct_conf_na.feature 'triple helix' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker AMX 500 2 ? Varian INOVA 750 3 ? Varian INOVA 600 # _atom_sites.entry_id 1S9L _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_