HEADER TRANSCRIPTION 09-FEB-04 1SB0 TITLE SOLUTION STRUCTURE OF THE KIX DOMAIN OF CBP BOUND TO THE TITLE 2 TRANSACTIVATION DOMAIN OF C-MYB COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN CBP; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KIX DOMAIN; COMPND 5 SYNONYM: CREB-BINDING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROTEIN C-MYB; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: TRANSCRIPTIONAL ACTIVATION DOMAIN; COMPND 11 SYNONYM: MYB PROTO-ONCOGENE PROTEIN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CBP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DNAY; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: C-MYB; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) DNAY; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: UBIQUITIN EXPRESSION VECTOR KEYWDS CREB-BINDING PROTEIN; TRANSCRIPTIONAL ACTIVATION; CONSTITUTIVE KEYWDS 2 ACTIVATION; LXXLL MOTIF; MYB; KIX, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.ZOR,R.N.DE GUZMAN,H.J.DYSON,P.E.WRIGHT REVDAT 4 22-MAY-24 1SB0 1 REMARK REVDAT 3 02-MAR-22 1SB0 1 REMARK REVDAT 2 24-FEB-09 1SB0 1 VERSN REVDAT 1 13-APR-04 1SB0 0 JRNL AUTH T.ZOR,R.N.DE GUZMAN,H.J.DYSON,P.E.WRIGHT JRNL TITL SOLUTION STRUCTURE OF THE KIX DOMAIN OF CBP BOUND TO THE JRNL TITL 2 TRANSACTIVATION DOMAIN OF C-MYB JRNL REF J.MOL.BIOL. V. 337 521 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15019774 JRNL DOI 10.1016/J.JMB.2004.01.038 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5, AMBER 7 REMARK 3 AUTHORS : PETER GUNTERT (DYANA), DAVID CASE ET AL. (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SB0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-04. REMARK 100 THE DEPOSITION ID IS D_1000021568. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 27 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 50 MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM TRIS D11 ACETATE D4; 50 MM REMARK 210 NACL; 2 MM NAN3; PH 5.5 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW 4.3.1 REMARK 210 METHOD USED : INITIAL STRUCTURES FROM DYANA REMARK 210 AND REFINED IN AMBER REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TYR A 73 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 2 -73.52 -81.05 REMARK 500 1 PRO A 28 81.43 -67.50 REMARK 500 1 GLU A 80 85.22 8.95 REMARK 500 1 LYS A 82 -75.05 -17.07 REMARK 500 1 SER A 85 -71.16 0.10 REMARK 500 1 THR B 102 -69.50 -24.54 REMARK 500 1 ALA B 111 -61.04 -135.21 REMARK 500 3 VAL A 2 47.81 -77.51 REMARK 500 3 PHE A 27 94.42 -165.81 REMARK 500 3 PRO A 28 105.50 -57.48 REMARK 500 3 GLU A 80 -86.62 23.13 REMARK 500 3 SER A 85 -77.66 -158.70 REMARK 500 4 ASN A 59 37.26 -77.73 REMARK 500 4 ARG A 83 -73.90 -96.37 REMARK 500 4 GLN B 110 34.96 -97.93 REMARK 500 5 ARG A 83 -158.05 -74.65 REMARK 500 5 ARG A 84 70.30 -66.06 REMARK 500 5 LYS B 107 -72.89 -37.14 REMARK 500 6 PHE A 27 88.79 -150.78 REMARK 500 6 SER A 85 -94.08 20.75 REMARK 500 7 ARG A 3 73.26 -162.55 REMARK 500 7 LYS A 4 28.95 -145.30 REMARK 500 7 ARG A 83 -106.00 -134.33 REMARK 500 7 GLN B 110 56.05 9.86 REMARK 500 8 GLU A 80 84.78 11.87 REMARK 500 8 ARG A 84 -60.14 -105.28 REMARK 500 8 GLU B 89 -71.30 -12.84 REMARK 500 8 THR B 102 -63.23 -19.74 REMARK 500 9 SER A 85 45.57 -75.56 REMARK 500 9 GLU B 89 -79.01 0.17 REMARK 500 10 VAL A 2 105.13 -44.19 REMARK 500 10 ARG A 3 -36.64 -158.78 REMARK 500 10 GLU A 8 -39.66 -35.66 REMARK 500 10 PHE A 27 95.15 -162.19 REMARK 500 10 PRO A 28 96.57 -51.91 REMARK 500 10 LYS A 36 49.37 -78.40 REMARK 500 10 GLU A 80 108.73 -38.56 REMARK 500 10 GLN B 109 52.62 29.82 REMARK 500 11 LYS A 4 17.64 -151.58 REMARK 500 11 GLU A 8 -46.28 -29.93 REMARK 500 11 PRO A 28 85.01 -66.72 REMARK 500 11 ASN A 59 47.73 -79.44 REMARK 500 11 SER A 60 145.85 173.34 REMARK 500 11 GLU B 89 -71.78 -10.09 REMARK 500 12 GLU A 80 77.79 -109.37 REMARK 500 12 GLU A 81 108.59 -19.60 REMARK 500 12 LYS A 82 -18.69 -30.59 REMARK 500 12 SER A 85 -111.80 46.60 REMARK 500 13 ARG A 3 -61.15 -28.77 REMARK 500 14 ARG A 3 -100.41 0.66 REMARK 500 REMARK 500 THIS ENTRY HAS 71 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 64 0.09 SIDE CHAIN REMARK 500 1 TYR A 73 0.30 SIDE CHAIN REMARK 500 1 ARG B 91 0.11 SIDE CHAIN REMARK 500 2 TYR A 64 0.07 SIDE CHAIN REMARK 500 2 TYR A 65 0.08 SIDE CHAIN REMARK 500 2 TYR A 73 0.15 SIDE CHAIN REMARK 500 3 TYR A 73 0.14 SIDE CHAIN REMARK 500 4 TYR A 55 0.07 SIDE CHAIN REMARK 500 4 TYR A 64 0.10 SIDE CHAIN REMARK 500 4 TYR A 73 0.15 SIDE CHAIN REMARK 500 5 ARG A 3 0.08 SIDE CHAIN REMARK 500 5 ARG A 15 0.08 SIDE CHAIN REMARK 500 5 TYR A 55 0.07 SIDE CHAIN REMARK 500 5 TYR A 65 0.07 SIDE CHAIN REMARK 500 5 TYR A 73 0.14 SIDE CHAIN REMARK 500 6 TYR A 64 0.07 SIDE CHAIN REMARK 500 6 TYR A 73 0.14 SIDE CHAIN REMARK 500 7 ARG A 3 0.12 SIDE CHAIN REMARK 500 7 ARG A 39 0.10 SIDE CHAIN REMARK 500 7 TYR A 64 0.07 SIDE CHAIN REMARK 500 7 TYR A 73 0.16 SIDE CHAIN REMARK 500 8 TYR A 55 0.20 SIDE CHAIN REMARK 500 8 TYR A 64 0.06 SIDE CHAIN REMARK 500 9 TYR A 55 0.17 SIDE CHAIN REMARK 500 9 TYR A 64 0.08 SIDE CHAIN REMARK 500 9 TYR A 73 0.13 SIDE CHAIN REMARK 500 10 TYR A 64 0.09 SIDE CHAIN REMARK 500 10 TYR A 73 0.16 SIDE CHAIN REMARK 500 11 PHE A 27 0.10 SIDE CHAIN REMARK 500 11 TYR A 46 0.06 SIDE CHAIN REMARK 500 11 TYR A 55 0.10 SIDE CHAIN REMARK 500 11 TYR A 64 0.11 SIDE CHAIN REMARK 500 11 TYR A 73 0.13 SIDE CHAIN REMARK 500 11 ARG A 83 0.07 SIDE CHAIN REMARK 500 12 TYR A 64 0.07 SIDE CHAIN REMARK 500 12 TYR A 65 0.09 SIDE CHAIN REMARK 500 12 TYR A 73 0.15 SIDE CHAIN REMARK 500 13 TYR A 64 0.11 SIDE CHAIN REMARK 500 13 TYR A 73 0.16 SIDE CHAIN REMARK 500 14 TYR A 64 0.10 SIDE CHAIN REMARK 500 14 TYR A 65 0.08 SIDE CHAIN REMARK 500 14 TYR A 73 0.15 SIDE CHAIN REMARK 500 15 ARG A 38 0.09 SIDE CHAIN REMARK 500 15 TYR A 55 0.18 SIDE CHAIN REMARK 500 15 TYR A 65 0.10 SIDE CHAIN REMARK 500 15 TYR A 73 0.18 SIDE CHAIN REMARK 500 16 TYR A 73 0.08 SIDE CHAIN REMARK 500 17 TYR A 64 0.07 SIDE CHAIN REMARK 500 17 TYR A 73 0.14 SIDE CHAIN REMARK 500 18 PHE A 27 0.09 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 57 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1SB0 A 1 87 UNP P45481 CBP_MOUSE 580 666 DBREF 1SB0 B 88 112 UNP P06876 MYB_MOUSE 291 315 SEQRES 1 A 87 GLY VAL ARG LYS GLY TRP HIS GLU HIS VAL THR GLN ASP SEQRES 2 A 87 LEU ARG SER HIS LEU VAL HIS LYS LEU VAL GLN ALA ILE SEQRES 3 A 87 PHE PRO THR PRO ASP PRO ALA ALA LEU LYS ASP ARG ARG SEQRES 4 A 87 MET GLU ASN LEU VAL ALA TYR ALA LYS LYS VAL GLU GLY SEQRES 5 A 87 ASP MET TYR GLU SER ALA ASN SER ARG ASP GLU TYR TYR SEQRES 6 A 87 HIS LEU LEU ALA GLU LYS ILE TYR LYS ILE GLN LYS GLU SEQRES 7 A 87 LEU GLU GLU LYS ARG ARG SER ARG LEU SEQRES 1 B 25 LYS GLU LYS ARG ILE LYS GLU LEU GLU LEU LEU LEU MET SEQRES 2 B 25 SER THR GLU ASN GLU LEU LYS GLY GLN GLN ALA LEU HELIX 1 1 TRP A 6 VAL A 10 5 5 HELIX 2 2 THR A 11 PHE A 27 1 17 HELIX 3 3 ASP A 31 LYS A 36 5 6 HELIX 4 4 ASP A 37 ALA A 58 1 22 HELIX 5 5 SER A 60 GLU A 80 1 21 HELIX 6 6 LYS B 88 GLN B 109 1 22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1