HEADER TRANSCRIPTION 11-FEB-04 1SC5 TITLE SIGMA-28(FLIA)/FLGM COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE SIGMA FACTOR FLIA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTI-SIGMA FACTOR FLGM; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 GENE: FLIA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-RIL-CODON(+); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKMS5; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 12 ORGANISM_TAXID: 63363; SOURCE 13 GENE: FLGM; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21-RIL-CODON(+); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PKMS5 KEYWDS RNA POLYMERASE SIGMA FACTOR, ANTI-SIGMA FACTOR, TRANSCRIPTION, KEYWDS 2 FLAGELLAR GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR M.K.SORENSON,S.S.RAY,S.A.DARST REVDAT 4 14-FEB-24 1SC5 1 SEQADV REVDAT 3 24-FEB-09 1SC5 1 VERSN REVDAT 2 18-MAY-04 1SC5 1 JRNL REVDAT 1 06-APR-04 1SC5 0 JRNL AUTH M.K.SORENSON,S.S.RAY,S.A.DARST JRNL TITL CRYSTAL STRUCTURE OF THE FLAGELLAR SIGMA/ANTI-SIGMA COMPLEX JRNL TITL 2 SIGMA(28)/FLGM REVEALS AN INTACT SIGMA FACTOR IN AN INACTIVE JRNL TITL 3 CONFORMATION. JRNL REF MOL.CELL V. 14 127 2004 JRNL REFN ISSN 1097-2765 JRNL PMID 15068809 JRNL DOI 10.1016/S1097-2765(04)00150-9 REMARK 2 REMARK 2 RESOLUTION. 3.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 440999.670 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 10616 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 555 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.45 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1389 REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 75 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2122 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.29000 REMARK 3 B12 (A**2) : 7.56000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM SIGMAA (A) : 0.66 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.52 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.63 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.020 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 13.590; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 21.180; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 29.880; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 36.260; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.23 REMARK 3 BSOL : 45.78 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SC5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-04. REMARK 100 THE DEPOSITION ID IS D_1000021592. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96486,0.97969,0.97989,0.96486 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11003 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.250 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 800, SODIUM CACODYLATE, CALCIUM REMARK 280 ACETATE, SODIUM CHLORIDE, TRIS, ISOPROPANOL, 6-AMINO-CAPROIC REMARK 280 ACID, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.26733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.13367 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.13367 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.26733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 164 REMARK 465 VAL A 165 REMARK 465 GLU A 166 REMARK 465 GLU A 167 REMARK 465 ASN A 234 REMARK 465 PRO A 235 REMARK 465 LEU A 236 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 GLU B 18 REMARK 465 LYS B 19 REMARK 465 ARG B 20 REMARK 465 LYS B 21 REMARK 465 ASN B 22 REMARK 465 THR B 23 REMARK 465 GLU B 24 REMARK 465 GLN B 25 REMARK 465 LYS B 26 REMARK 465 GLU B 27 REMARK 465 SER B 28 REMARK 465 GLY B 29 REMARK 465 THR B 30 REMARK 465 ASN B 31 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 ASN A 3 CG OD1 ND2 REMARK 470 ASN A 56 CG OD1 ND2 REMARK 470 SER A 58 OG REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 ARG A 64 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 LEU A 71 CG CD1 CD2 REMARK 470 ARG A 89 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 90 CG CD OE1 NE2 REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 ARG A 96 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 97 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 102 CG1 CG2 REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 SER A 125 OG REMARK 470 GLU A 127 CG CD OE1 OE2 REMARK 470 SER A 143 OG REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 VAL A 147 CG1 CG2 REMARK 470 ASP A 150 CG OD1 OD2 REMARK 470 PHE A 151 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 153 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 154 CG OD1 OD2 REMARK 470 TYR A 155 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 156 OG REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 LEU A 158 CG CD1 CD2 REMARK 470 ILE A 159 CG1 CG2 CD1 REMARK 470 SER A 161 OG REMARK 470 SER A 162 OG REMARK 470 THR A 163 OG1 CG2 REMARK 470 GLU A 168 CG CD OE1 OE2 REMARK 470 VAL A 169 CG1 CG2 REMARK 470 ILE A 170 CG1 CG2 CD1 REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 ARG A 172 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 THR A 175 OG1 CG2 REMARK 470 LYS A 177 CG CD CE NZ REMARK 470 VAL A 178 CG1 CG2 REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 VAL A 182 CG1 CG2 REMARK 470 SER A 183 OG REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 LEU A 185 CG CD1 CD2 REMARK 470 GLU A 187 CG CD OE1 OE2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 LEU A 191 CG CD1 CD2 REMARK 470 LYS A 204 CG CD CE NZ REMARK 470 ILE A 209 CG1 CG2 CD1 REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 470 LYS A 223 CG CD CE NZ REMARK 470 GLU A 230 CG CD OE1 OE2 REMARK 470 MET A 231 CG SD CE REMARK 470 ILE B 5 CG1 CG2 CD1 REMARK 470 GLU B 16 CG CD OE1 OE2 REMARK 470 LYS B 32 CG CD CE NZ REMARK 470 ILE B 33 CG1 CG2 CD1 REMARK 470 GLU B 34 CG CD OE1 OE2 REMARK 470 ASP B 35 CG OD1 OD2 REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 VAL B 51 CG1 CG2 REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 ASP B 55 CG OD1 OD2 REMARK 470 LEU B 56 CG CD1 CD2 REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 LYS B 59 CG CD CE NZ REMARK 470 VAL B 60 CG1 CG2 REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 LEU B 63 CG CD1 CD2 REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 GLU B 65 CG CD OE1 OE2 REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 ILE B 67 CG1 CG2 CD1 REMARK 470 GLU B 68 CG CD OE1 OE2 REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 VAL B 74 CG1 CG2 REMARK 470 GLU B 77 CG CD OE1 OE2 REMARK 470 VAL B 79 CG1 CG2 REMARK 470 LYS B 81 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 202 C - N - CA ANGL. DEV. = 11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 23 -80.93 -36.69 REMARK 500 LYS A 31 7.83 -63.63 REMARK 500 ILE A 48 -63.93 -28.52 REMARK 500 LYS A 52 -35.51 -35.55 REMARK 500 ASP A 55 -79.02 -53.95 REMARK 500 ASN A 56 30.99 -64.36 REMARK 500 LEU A 71 -8.21 -53.56 REMARK 500 ASP A 85 35.66 -75.07 REMARK 500 SER A 88 148.07 -35.82 REMARK 500 GLU A 95 -73.31 -58.30 REMARK 500 GLU A 100 -75.84 -43.76 REMARK 500 ALA A 152 -74.98 -133.21 REMARK 500 ARG A 153 -18.69 -46.79 REMARK 500 SER A 162 49.56 -140.25 REMARK 500 ARG A 172 9.34 -63.32 REMARK 500 LYS A 179 -6.44 -55.52 REMARK 500 GLU A 180 -77.98 -77.30 REMARK 500 GLU A 187 -30.36 -38.25 REMARK 500 PHE A 197 -76.51 -82.28 REMARK 500 GLU A 211 48.21 39.07 REMARK 500 THR A 212 -158.69 -124.71 REMARK 500 ARG A 227 -72.37 -62.68 REMARK 500 LEU A 232 1.66 -62.14 REMARK 500 ILE B 33 -72.89 -80.45 REMARK 500 LYS B 48 -27.40 -32.12 REMARK 500 ASN B 49 44.83 -87.38 REMARK 500 VAL B 51 2.06 -55.90 REMARK 500 GLU B 53 -53.03 -14.12 REMARK 500 LYS B 54 135.65 7.65 REMARK 500 LEU B 56 64.50 -64.16 REMARK 500 GLU B 57 -41.05 134.43 REMARK 500 LYS B 69 43.09 -81.74 REMARK 500 LYS B 81 -77.16 -55.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 78 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RP3 RELATED DB: PDB REMARK 900 SIGMA-28(FLIA)/FLGM COMPLEX AT HIGHER RESOLUTION. DBREF 1SC5 A 1 236 UNP O67268 O67268_AQUAE 1 236 DBREF 1SC5 B 1 88 UNP O66683 O66683_AQUAE 1 88 SEQADV 1SC5 GLY A -2 UNP O67268 CLONING ARTIFACT SEQADV 1SC5 SER A -1 UNP O67268 CLONING ARTIFACT SEQADV 1SC5 HIS A 0 UNP O67268 CLONING ARTIFACT SEQRES 1 A 239 GLY SER HIS MET LYS ASN PRO TYR SER ASN GLN ILE GLU SEQRES 2 A 239 ARG GLU GLU LEU ILE LEU LYS TYR LEU PRO LEU VAL LYS SEQRES 3 A 239 ALA ILE ALA THR ASN ILE LYS LYS HIS LEU PRO GLU ASP SEQRES 4 A 239 VAL ASP ILE ARG ASP LEU ILE SER TYR GLY VAL ILE GLY SEQRES 5 A 239 LEU ILE LYS ALA VAL ASP ASN LEU SER THR GLU ASN PRO SEQRES 6 A 239 LYS ARG ALA GLU ALA TYR ILE LYS LEU ARG ILE LYS GLY SEQRES 7 A 239 ALA ILE TYR ASP TYR LEU ARG SER LEU ASP PHE GLY SER SEQRES 8 A 239 ARG GLN VAL ARG GLU LYS GLU ARG ARG ILE LYS GLU VAL SEQRES 9 A 239 VAL GLU LYS LEU LYS GLU LYS LEU GLY ARG GLU PRO THR SEQRES 10 A 239 ASP GLU GLU VAL ALA LYS GLU LEU GLY ILE SER THR GLU SEQRES 11 A 239 GLU LEU PHE LYS THR LEU ASP LYS ILE ASN PHE SER TYR SEQRES 12 A 239 ILE LEU SER LEU GLU GLU VAL PHE ARG ASP PHE ALA ARG SEQRES 13 A 239 ASP TYR SER GLU LEU ILE PRO SER SER THR ASN VAL GLU SEQRES 14 A 239 GLU GLU VAL ILE LYS ARG GLU LEU THR GLU LYS VAL LYS SEQRES 15 A 239 GLU ALA VAL SER LYS LEU PRO GLU ARG GLU LYS LEU VAL SEQRES 16 A 239 ILE GLN LEU ILE PHE TYR GLU GLU LEU PRO ALA LYS GLU SEQRES 17 A 239 VAL ALA LYS ILE LEU GLU THR SER VAL SER ARG VAL SER SEQRES 18 A 239 GLN LEU LYS ALA LYS ALA LEU GLU ARG LEU ARG GLU MET SEQRES 19 A 239 LEU SER ASN PRO LEU SEQRES 1 B 88 MET VAL ASN ARG ILE GLU LEU SER ARG LEU ILE GLY LEU SEQRES 2 B 88 LEU LEU GLU THR GLU LYS ARG LYS ASN THR GLU GLN LYS SEQRES 3 B 88 GLU SER GLY THR ASN LYS ILE GLU ASP LYS VAL THR LEU SEQRES 4 B 88 SER LYS ILE ALA GLN GLU LEU SER LYS ASN ASP VAL GLU SEQRES 5 B 88 GLU LYS ASP LEU GLU LYS LYS VAL LYS GLU LEU LYS GLU SEQRES 6 B 88 LYS ILE GLU LYS GLY GLU TYR GLU VAL SER ASP GLU LYS SEQRES 7 B 88 VAL VAL LYS GLY LEU ILE GLU PHE PHE THR HELIX 1 1 ASN A 3 TYR A 18 1 16 HELIX 2 2 TYR A 18 LYS A 30 1 13 HELIX 3 3 LYS A 31 LEU A 33 5 3 HELIX 4 4 ASP A 38 ASN A 56 1 19 HELIX 5 5 ASN A 61 SER A 83 1 23 HELIX 6 6 SER A 88 GLY A 110 1 23 HELIX 7 7 THR A 114 LEU A 122 1 9 HELIX 8 8 SER A 125 ASP A 154 1 30 HELIX 9 9 TYR A 155 ILE A 159 5 5 HELIX 10 10 LYS A 171 VAL A 182 1 12 HELIX 11 11 PRO A 186 PHE A 197 1 12 HELIX 12 12 PRO A 202 LEU A 210 1 9 HELIX 13 13 SER A 213 LEU A 232 1 20 HELIX 14 14 ASN B 3 GLU B 16 1 14 HELIX 15 15 LYS B 32 LYS B 48 1 17 HELIX 16 16 ASN B 49 LYS B 54 5 6 HELIX 17 17 GLU B 57 LYS B 66 1 10 HELIX 18 18 SER B 75 THR B 88 1 14 CRYST1 118.117 118.117 87.401 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008466 0.004888 0.000000 0.00000 SCALE2 0.000000 0.009776 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011442 0.00000