HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 17-FEB-04 1SED TITLE CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION YHAL FROM BACILLUS TITLE 2 SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YHAI; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: APC1180; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YHAI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, HYPOTHETICAL PROTEIN, YHAI, FOUR HELIX BUNDLE, KEYWDS 2 COLIED-COIL, PSI, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, MCSG, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,A.JOACHIMIAK,E.EVDOKIMOVA,A.SAVCHENKO,A.EDWARDS,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 14-FEB-24 1SED 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1SED 1 VERSN REVDAT 3 24-FEB-09 1SED 1 VERSN REVDAT 2 18-JAN-05 1SED 1 AUTHOR KEYWDS REMARK REVDAT 1 25-MAY-04 1SED 0 JRNL AUTH Y.KIM,A.JOACHIMIAK,E.EVDOKIMOVA,A.SAVCHENKO,A.EDWARDS JRNL TITL THE CRYSTAL STRUCTURE OF THE HYPOTHETICAL PROTEIN YHAI, JRNL TITL 2 APC1180 FROM BACILLUS SUBTILIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 400380.640 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 41114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4117 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5989 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 645 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2761 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 178 REMARK 3 SOLVENT ATOMS : 233 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.72000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : 1.49000 REMARK 3 B12 (A**2) : 2.55000 REMARK 3 B13 (A**2) : 2.29000 REMARK 3 B23 (A**2) : 2.84000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.19 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 18.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.740 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.610 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.330 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.790 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.310 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 41.08 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : LIGAND.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : LIGAND.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SED COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-04. REMARK 100 THE DEPOSITION ID IS D_1000021636. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.282, 0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41848 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 29.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 4.240 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.34500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FLUORIDE, PEG 3350, 2-METHYL REMARK 280 2,4 PENTANEDIOL, SODIUM CACODYLATE, PH 6.4, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: UNKNOWN, BUT BASED ON THE STRUCTURE, A TRIMER AS FOUND IN REMARK 300 THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -281.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 114 REMARK 465 SER A 115 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 GLY B 114 REMARK 465 SER B 115 REMARK 465 GLY C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 GLY C 114 REMARK 465 SER C 115 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 GOL C 806 O HOH C 822 2.17 REMARK 500 O3 GOL B 803 O HOH B 882 2.17 REMARK 500 O1 GOL B 804 O HOH B 882 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 98 51.17 38.85 REMARK 500 TYR A 98 51.08 38.85 REMARK 500 TYR B 98 51.33 38.17 REMARK 500 TYR B 98 53.02 38.17 REMARK 500 PHE C 68 32.19 -143.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 52 OE1 REMARK 620 2 GLU A 55 OE1 105.4 REMARK 620 3 GLU A 55 OE2 104.4 54.2 REMARK 620 4 ASP C 107 OD1 137.1 87.8 116.0 REMARK 620 5 ASP C 107 OD2 86.7 126.6 168.4 54.4 REMARK 620 6 HIS C 111 NE2 94.9 134.6 81.7 104.3 94.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 107 OD1 REMARK 620 2 ASP A 107 OD2 55.5 REMARK 620 3 HIS A 111 NE2 90.1 108.6 REMARK 620 4 GLU B 52 OE2 88.1 135.6 94.4 REMARK 620 5 GLU B 55 OE1 125.6 79.6 136.5 109.1 REMARK 620 6 GLU B 55 OE2 166.7 116.1 82.9 103.7 56.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 505 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 77 O REMARK 620 2 HOH B 869 O 134.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 107 OD2 REMARK 620 2 ASP B 107 OD1 55.8 REMARK 620 3 HIS B 111 NE2 104.1 100.2 REMARK 620 4 GLU C 52 OE2 137.9 86.5 100.1 REMARK 620 5 GLU C 55 OE1 108.3 163.7 79.3 109.7 REMARK 620 6 GLU C 55 OE2 88.1 123.0 133.2 99.9 54.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 712 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 713 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 714 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 715 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 716 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 717 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 806 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC1180 RELATED DB: TARGETDB DBREF 1SED A 1 113 UNP O07517 YHAI_BACSU 1 113 DBREF 1SED B 1 113 UNP O07517 YHAI_BACSU 1 113 DBREF 1SED C 1 113 UNP O07517 YHAI_BACSU 1 113 SEQADV 1SED GLY A -1 UNP O07517 CLONING ARTIFACT SEQADV 1SED HIS A 0 UNP O07517 CLONING ARTIFACT SEQADV 1SED GLY A 114 UNP O07517 CLONING ARTIFACT SEQADV 1SED SER A 115 UNP O07517 CLONING ARTIFACT SEQADV 1SED GLY B -1 UNP O07517 CLONING ARTIFACT SEQADV 1SED HIS B 0 UNP O07517 CLONING ARTIFACT SEQADV 1SED GLY B 114 UNP O07517 CLONING ARTIFACT SEQADV 1SED SER B 115 UNP O07517 CLONING ARTIFACT SEQADV 1SED GLY C -1 UNP O07517 CLONING ARTIFACT SEQADV 1SED HIS C 0 UNP O07517 CLONING ARTIFACT SEQADV 1SED GLY C 114 UNP O07517 CLONING ARTIFACT SEQADV 1SED SER C 115 UNP O07517 CLONING ARTIFACT SEQRES 1 A 117 GLY HIS MET ASP SER MET ASP HIS ARG ILE GLU ARG LEU SEQRES 2 A 117 GLU TYR TYR ILE GLN LEU LEU VAL LYS THR VAL ASP MET SEQRES 3 A 117 ASP ARG TYR PRO PHE TYR ALA LEU LEU ILE ASP LYS GLY SEQRES 4 A 117 LEU SER LYS GLU GLU GLY GLU ALA VAL MET ARG ILE CYS SEQRES 5 A 117 ASP GLU LEU SER GLU GLU LEU ALA THR GLN LYS ALA GLN SEQRES 6 A 117 GLY PHE VAL THR PHE ASP LYS LEU LEU ALA LEU PHE ALA SEQRES 7 A 117 GLY GLN LEU ASN GLU LYS LEU ASP VAL HIS GLU THR ILE SEQRES 8 A 117 PHE ALA LEU TYR GLU GLN GLY LEU TYR GLN GLU LEU MET SEQRES 9 A 117 GLU VAL PHE ILE ASP ILE MET LYS HIS PHE ASP GLY SER SEQRES 1 B 117 GLY HIS MET ASP SER MET ASP HIS ARG ILE GLU ARG LEU SEQRES 2 B 117 GLU TYR TYR ILE GLN LEU LEU VAL LYS THR VAL ASP MET SEQRES 3 B 117 ASP ARG TYR PRO PHE TYR ALA LEU LEU ILE ASP LYS GLY SEQRES 4 B 117 LEU SER LYS GLU GLU GLY GLU ALA VAL MET ARG ILE CYS SEQRES 5 B 117 ASP GLU LEU SER GLU GLU LEU ALA THR GLN LYS ALA GLN SEQRES 6 B 117 GLY PHE VAL THR PHE ASP LYS LEU LEU ALA LEU PHE ALA SEQRES 7 B 117 GLY GLN LEU ASN GLU LYS LEU ASP VAL HIS GLU THR ILE SEQRES 8 B 117 PHE ALA LEU TYR GLU GLN GLY LEU TYR GLN GLU LEU MET SEQRES 9 B 117 GLU VAL PHE ILE ASP ILE MET LYS HIS PHE ASP GLY SER SEQRES 1 C 117 GLY HIS MET ASP SER MET ASP HIS ARG ILE GLU ARG LEU SEQRES 2 C 117 GLU TYR TYR ILE GLN LEU LEU VAL LYS THR VAL ASP MET SEQRES 3 C 117 ASP ARG TYR PRO PHE TYR ALA LEU LEU ILE ASP LYS GLY SEQRES 4 C 117 LEU SER LYS GLU GLU GLY GLU ALA VAL MET ARG ILE CYS SEQRES 5 C 117 ASP GLU LEU SER GLU GLU LEU ALA THR GLN LYS ALA GLN SEQRES 6 C 117 GLY PHE VAL THR PHE ASP LYS LEU LEU ALA LEU PHE ALA SEQRES 7 C 117 GLY GLN LEU ASN GLU LYS LEU ASP VAL HIS GLU THR ILE SEQRES 8 C 117 PHE ALA LEU TYR GLU GLN GLY LEU TYR GLN GLU LEU MET SEQRES 9 C 117 GLU VAL PHE ILE ASP ILE MET LYS HIS PHE ASP GLY SER HET ZN A 501 1 HET NA A 504 1 HET MPD A 701 8 HET MPD A 702 8 HET MPD A 703 8 HET MPD A 712 8 HET MPD A 714 8 HET MPD A 715 8 HET GOL A 801 6 HET GOL A 802 6 HET ZN B 502 1 HET NA B 505 1 HET MPD B 704 8 HET MPD B 705 8 HET MPD B 706 8 HET MPD B 713 8 HET MPD B 716 8 HET GOL B 803 6 HET GOL B 804 6 HET ZN C 503 1 HET NA C 506 1 HET MPD C 707 8 HET MPD C 708 8 HET MPD C 709 8 HET MPD C 710 8 HET MPD C 711 8 HET MPD C 717 8 HET GOL C 805 6 HET GOL C 806 6 HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 ZN 3(ZN 2+) FORMUL 5 NA 3(NA 1+) FORMUL 6 MPD 17(C6 H14 O2) FORMUL 12 GOL 6(C3 H8 O3) FORMUL 33 HOH *233(H2 O) HELIX 1 1 SER A 3 LYS A 20 1 18 HELIX 2 2 TYR A 27 LYS A 36 1 10 HELIX 3 3 SER A 39 GLN A 63 1 25 HELIX 4 4 PHE A 68 LEU A 79 1 12 HELIX 5 5 ASP A 84 GLN A 95 1 12 HELIX 6 6 TYR A 98 ASP A 113 1 16 HELIX 7 7 MET B 4 LYS B 20 1 17 HELIX 8 8 TYR B 27 LYS B 36 1 10 HELIX 9 9 SER B 39 GLN B 63 1 25 HELIX 10 10 PHE B 68 LEU B 79 1 12 HELIX 11 11 ASP B 84 GLN B 95 1 12 HELIX 12 12 TYR B 98 ASP B 113 1 16 HELIX 13 13 SER C 3 LYS C 20 1 18 HELIX 14 14 TYR C 27 LYS C 36 1 10 HELIX 15 15 SER C 39 GLN C 63 1 25 HELIX 16 16 PHE C 68 LEU C 79 1 12 HELIX 17 17 ASP C 84 GLN C 95 1 12 HELIX 18 18 TYR C 98 ASP C 113 1 16 LINK OE1 GLU A 52 ZN ZN A 501 1555 1555 2.09 LINK OE1 GLU A 55 ZN ZN A 501 1555 1555 2.00 LINK OE2 GLU A 55 ZN ZN A 501 1555 1555 2.63 LINK O GLY A 77 NA NA A 504 1555 1555 2.76 LINK OD1 ASP A 107 ZN ZN B 502 1556 1555 2.46 LINK OD2 ASP A 107 ZN ZN B 502 1556 1555 2.16 LINK NE2 HIS A 111 ZN ZN B 502 1556 1555 2.05 LINK ZN ZN A 501 OD1 ASP C 107 1555 1444 2.29 LINK ZN ZN A 501 OD2 ASP C 107 1555 1444 2.50 LINK ZN ZN A 501 NE2 HIS C 111 1555 1444 2.06 LINK OE2 GLU B 52 ZN ZN B 502 1555 1555 2.25 LINK OE1 GLU B 55 ZN ZN B 502 1555 1555 2.04 LINK OE2 GLU B 55 ZN ZN B 502 1555 1555 2.46 LINK O GLY B 77 NA NA B 505 1555 1555 2.73 LINK OD2 ASP B 107 ZN ZN C 503 1565 1555 2.09 LINK OD1 ASP B 107 ZN ZN C 503 1565 1555 2.49 LINK NE2 HIS B 111 ZN ZN C 503 1565 1555 2.08 LINK NA NA B 505 O HOH B 869 1555 1555 2.85 LINK OE2 GLU C 52 ZN ZN C 503 1555 1555 2.03 LINK OE1 GLU C 55 ZN ZN C 503 1555 1555 2.53 LINK OE2 GLU C 55 ZN ZN C 503 1555 1555 2.21 LINK O GLY C 77 NA NA C 506 1555 1555 2.76 SITE 1 AC1 4 GLU A 52 GLU A 55 ASP C 107 HIS C 111 SITE 1 AC2 4 ASP A 107 HIS A 111 GLU B 52 GLU B 55 SITE 1 AC3 4 ASP B 107 HIS B 111 GLU C 52 GLU C 55 SITE 1 AC4 4 GLY A 77 GOL A 801 GOL A 802 HOH A 875 SITE 1 AC5 4 GLY B 77 GOL B 803 GOL B 804 HOH B 869 SITE 1 AC6 3 GLY C 77 GOL C 805 GOL C 806 SITE 1 AC7 4 ASP A 51 HOH A 864 HIS C 111 HOH C 824 SITE 1 AC8 3 ASP A 69 ALA A 73 MPD A 715 SITE 1 AC9 4 VAL A 85 MET A 109 PHE A 112 ASP A 113 SITE 1 BC1 6 HIS A 111 PHE A 112 HOH A 856 MET B 47 SITE 2 BC1 6 ASP B 51 HOH B 865 SITE 1 BC2 2 ASP B 69 PHE B 112 SITE 1 BC3 5 ALA B 76 VAL B 85 HIS B 86 PHE B 112 SITE 2 BC3 5 ASP B 113 SITE 1 BC4 3 ARG A 10 GLN C 16 ILE C 34 SITE 1 BC5 6 HIS B 111 PHE B 112 HOH B 822 MET C 47 SITE 2 BC5 6 ASP C 51 HOH C 820 SITE 1 BC6 5 ALA C 76 HIS C 86 PHE C 112 ASP C 113 SITE 2 BC6 5 MPD C 710 SITE 1 BC7 4 ASP C 69 ALA C 73 PHE C 112 MPD C 709 SITE 1 BC8 4 LYS B 61 HOH B 830 GLU C 56 HOH C 880 SITE 1 BC9 4 GLU A 56 HOH A 862 VAL C 66 HOH C 833 SITE 1 CC1 4 GLN B 16 ILE B 34 ASP B 35 ARG C 10 SITE 1 CC2 4 LYS A 70 LYS C 61 ALA C 62 GLY C 64 SITE 1 CC3 4 ASP A 69 LYS A 70 ALA A 73 MPD A 702 SITE 1 CC4 5 LYS A 61 ALA A 62 GLN A 63 GLY A 64 SITE 2 CC4 5 LYS B 70 SITE 1 CC5 5 LYS B 61 ALA B 62 GLY B 64 LYS C 70 SITE 2 CC5 5 LEU C 74 SITE 1 CC6 5 ALA A 76 GLY A 77 LEU A 79 NA A 504 SITE 2 CC6 5 HOH A 874 SITE 1 CC7 8 GLY A 77 GLN A 78 NA A 504 HOH A 874 SITE 2 CC7 8 HOH A 875 GLN C 63 GLY C 64 PHE C 65 SITE 1 CC8 6 ALA B 76 GLY B 77 LEU B 79 NA B 505 SITE 2 CC8 6 GOL B 804 HOH B 882 SITE 1 CC9 8 GLN A 63 GLY A 64 PHE A 65 GLY B 77 SITE 2 CC9 8 NA B 505 GOL B 803 HOH B 880 HOH B 882 SITE 1 DC1 7 ALA C 76 GLY C 77 LEU C 79 GLU C 81 SITE 2 DC1 7 NA C 506 HOH C 808 HOH C 822 SITE 1 DC2 8 GLN B 63 GLY B 64 PHE B 65 GLY C 77 SITE 2 DC2 8 GLN C 78 NA C 506 HOH C 807 HOH C 822 CRYST1 56.784 64.550 64.503 111.37 107.19 107.13 P 1 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017611 0.005428 0.009357 0.00000 SCALE2 0.000000 0.016211 0.009224 0.00000 SCALE3 0.000000 0.000000 0.018671 0.00000