data_1SHO
#
_entry.id 1SHO
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.329
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
PDB 1SHO
WWPDB D_1000176377
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.content_type
_pdbx_database_related.details
PDB 1AA5 unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN'
PDB 1C0Q unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH 2-ACETOXY-D-PROPANOIC ACID'
PDB 1C0R unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN WITH D-LACTIC ACID'
PDB 1FVM unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH DI-ACETYL-LYS-D-ALA-D-ALA'
PDB 1GAC unspecified 'SOLUTION STRUCTURE OF A82846B COMPLEXED WITH ITS CELL WALL PENTAPEPTIDE FRAGMENT'
PDB 1GHG unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN AGLYCON'
PDB 1PN3 unspecified 'CRYSTAL STRUCTURE OF TDP-EPI-VANCOSAMINYLTRANSFERASE GTFA COMPLEXD WITH TDP AND DESVANCOSAMINYL VANCOMYCIN'
PDB 1PNV unspecified 'CRYSTAL STRUCTURE OF TDP-EPI-VANCOSAMINYLTRANSFERASE GTFA COMPLEXED WITH TDP AND VANCOMYCIN'
PDB 1QD8 unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH N-ACETYL GLYCIN'
PDB 1RRV unspecified 'CRYSTAL STRUCTURE OF TDP-VANCOSAMINYLTRANSFERASE GTFD COMPLEXED WITH TDP AND DESVANCOSAMINYL VANCOMYCIN.'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1SHO
_pdbx_database_status.recvd_initial_deposition_date 1997-07-23
_pdbx_database_status.deposit_site ?
_pdbx_database_status.process_site BNL
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
_audit_author.name 'Sheldrick, G.M.'
_audit_author.pdbx_ordinal 1
#
_citation.id primary
_citation.title 'Crystal Structure of Vancomycin.'
_citation.journal_abbrev Structure
_citation.journal_volume 4
_citation.page_first 1509
_citation.page_last ?
_citation.year 1996
_citation.journal_id_ASTM STRUE6
_citation.country UK
_citation.journal_id_ISSN 0969-2126
_citation.journal_id_CSD 2005
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 8994975
_citation.pdbx_database_id_DOI '10.1016/S0969-2126(96)00156-6'
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Schafer, M.' 1 ?
primary 'Schneider, T.R.' 2 ?
primary 'Sheldrick, G.M.' 3 ?
#
_cell.entry_id 1SHO
_cell.length_a 28.480
_cell.length_b 28.480
_cell.length_c 65.830
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 16
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 1SHO
_symmetry.space_group_name_H-M 'P 43 21 2'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 96
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer syn VANCOMYCIN 1149.977 2 ? ? ? ?
2 branched man 'vancosamine-(1-2)-beta-D-glucopyranose' 323.340 2 ? ? ? ?
3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ?
4 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ?
5 water nat water 18.015 108 ? ? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer yes
_entity_poly.pdbx_seq_one_letter_code '(MLU)(OMZ)N(GHP)(GHP)(OMY)(3FG)'
_entity_poly.pdbx_seq_one_letter_code_can XXNGGYX
_entity_poly.pdbx_strand_id A,B
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 MLU n
1 2 OMZ n
1 3 ASN n
1 4 GHP n
1 5 GHP n
1 6 OMY n
1 7 3FG n
#
_pdbx_entity_src_syn.entity_id 1
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num ?
_pdbx_entity_src_syn.pdbx_end_seq_num ?
_pdbx_entity_src_syn.organism_scientific 'AMYCOLATOPSIS ORIENTALIS'
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id 31958
_pdbx_entity_src_syn.details ?
#
_struct_ref.id 1
_struct_ref.db_name NOR
_struct_ref.db_code NOR00681
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_db_accession NOR00681
_struct_ref.pdbx_db_isoform ?
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1SHO A 1 ? 7 ? NOR00681 1 ? 7 ? 1 7
2 1 1SHO B 1 ? 7 ? NOR00681 1 ? 7 ? 1 7
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
3FG 'L-peptide linking' . '(2S)-amino(3,5-dihydroxyphenyl)ethanoic acid' ? 'C8 H9 N O4' 183.161
ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
BGC 'D-saccharide, beta linking' . beta-D-glucopyranose ? 'C6 H12 O6' 180.156
CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453
GHP 'D-peptide linking' . '(2R)-amino(4-hydroxyphenyl)ethanoic acid' ? 'C8 H9 N O3' 167.162
HOH non-polymer . WATER ? 'H2 O' 18.015
MLU 'D-peptide linking' . N-methyl-D-leucine ? 'C7 H15 N O2' 145.199
OMY 'L-peptide linking' n '(betaR)-3-chloro-beta-hydroxy-L-tyrosine' ? 'C9 H10 Cl N O4' 231.633
OMZ 'D-peptide linking' . '(betaR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE' ? 'C9 H10 Cl N O4' 231.633
RER 'L-saccharide, alpha linking' . vancosamine VANCOSAMINE 'C7 H15 N O3' 161.199
#
_exptl.entry_id 1SHO
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.90
_exptl_crystal.density_percent_sol 57.61
_exptl_crystal.description ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method ?
_exptl_crystal_grow.temp ?
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 5.8
_exptl_crystal_grow.pdbx_pH_range ?
_exptl_crystal_grow.pdbx_details 'PH 5.8'
#
_diffrn.id 1
_diffrn.ambient_temp 125
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector 'IMAGE PLATE'
_diffrn_detector.type MARRESEARCH
_diffrn_detector.pdbx_collection_date 1995-08-29
_diffrn_detector.details 'BENT CRYSTAL MONOCHROMATOR'
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator 'GE(111)'
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 0.862
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE BW7B'
_diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG'
_diffrn_source.pdbx_synchrotron_beamline BW7B
_diffrn_source.pdbx_wavelength 0.862
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
_reflns.entry_id 1SHO
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F ?
_reflns.d_resolution_low 70.000
_reflns.d_resolution_high 1.090
_reflns.number_obs 11867
_reflns.number_all ?
_reflns.percent_possible_obs 99.3
_reflns.pdbx_Rmerge_I_obs 0.05800
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 27.0000
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 13.900
#
_reflns_shell.pdbx_diffrn_id 1
_reflns_shell.pdbx_ordinal 1
_reflns_shell.d_res_high 1.09
_reflns_shell.d_res_low 1.17
_reflns_shell.percent_possible_all 100.0
_reflns_shell.Rmerge_I_obs 0.08300
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 19.700
_reflns_shell.pdbx_redundancy 6.80
#
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.entry_id 1SHO
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.ls_number_reflns_obs ?
_refine.ls_number_reflns_all 11867
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 70.00
_refine.ls_d_res_high 1.09
_refine.ls_percent_reflns_obs 99.3
_refine.ls_R_factor_obs 0.105
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters 2867
_refine.ls_number_restraints 3022
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-228'
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct 'AB INITIO'
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case 'ENGH AND HUBER RESTRAINT DISTANCES FOR ACETATE AND FOR THE TWO DISORDERED SUGARS'
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.pdbx_overall_phase_error ?
_refine.overall_SU_B ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_analyze.entry_id 1SHO
_refine_analyze.Luzzati_coordinate_error_obs ?
_refine_analyze.Luzzati_sigma_a_obs ?
_refine_analyze.Luzzati_d_res_low_obs ?
_refine_analyze.Luzzati_coordinate_error_free ?
_refine_analyze.Luzzati_sigma_a_free ?
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues 2
_refine_analyze.occupancy_sum_hydrogen 155.00
_refine_analyze.occupancy_sum_non_hydrogen 314.50
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 160
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 48
_refine_hist.number_atoms_solvent 108
_refine_hist.number_atoms_total 316
_refine_hist.d_res_high 1.09
_refine_hist.d_res_low 70.00
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
s_bond_d 0.024 ? ? ? 'X-RAY DIFFRACTION' ?
s_angle_d 0.000 ? ? ? 'X-RAY DIFFRACTION' ?
s_similar_dist 0.022 ? ? ? 'X-RAY DIFFRACTION' ?
s_from_restr_planes 0.057 ? ? ? 'X-RAY DIFFRACTION' ?
s_zero_chiral_vol 0.093 ? ? ? 'X-RAY DIFFRACTION' ?
s_non_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ?
s_anti_bump_dis_restr 0.041 ? ? ? 'X-RAY DIFFRACTION' ?
s_rigid_bond_adp_cmpnt 0.003 ? ? ? 'X-RAY DIFFRACTION' ?
s_similar_adp_cmpnt 0.017 ? ? ? 'X-RAY DIFFRACTION' ?
s_approx_iso_adps 0.104 ? ? ? 'X-RAY DIFFRACTION' ?
#
_pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_pdbx_refine.entry_id 1SHO
_pdbx_refine.R_factor_all_no_cutoff ?
_pdbx_refine.R_factor_obs_no_cutoff 0.105
_pdbx_refine.free_R_factor_no_cutoff ?
_pdbx_refine.free_R_error_no_cutoff ?
_pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ?
_pdbx_refine.free_R_val_test_set_ct_no_cutoff ?
_pdbx_refine.R_factor_all_4sig_cutoff ?
_pdbx_refine.R_factor_obs_4sig_cutoff 0.104
_pdbx_refine.free_R_factor_4sig_cutoff ?
_pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ?
_pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ?
_pdbx_refine.number_reflns_obs_4sig_cutoff 11394
#
_struct.entry_id 1SHO
_struct.title 'CRYSTAL STRUCTURE OF VANCOMYCIN AT ATOMIC RESOLUTION'
_struct.pdbx_descriptor VANCOMYCIN
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1SHO
_struct_keywords.pdbx_keywords ANTIBIOTIC
_struct_keywords.text 'GLYCOPEPTIDE, ANTIBIOTIC'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 1 ?
C N N 2 ?
D N N 2 ?
E N N 3 ?
F N N 4 ?
G N N 4 ?
H N N 5 ?
I N N 5 ?
#
_struct_biol.id 1
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? A MLU 1 C ? ? ? 1_555 A OMZ 2 N ? ? A MLU 1 A OMZ 2 1_555 ? ? ? ? ? ? ? 1.340 ? ?
covale2 covale both ? A OMZ 2 C ? ? ? 1_555 A ASN 3 N ? ? A OMZ 2 A ASN 3 1_555 ? ? ? ? ? ? ? 1.305 ? ?
covale3 covale none ? A OMZ 2 OH ? ? ? 1_555 A GHP 4 C5 ? ? A OMZ 2 A GHP 4 1_555 ? ? ? ? ? ? ? 1.393 ? ?
covale4 covale both ? A ASN 3 C ? ? ? 1_555 A GHP 4 N ? ? A ASN 3 A GHP 4 1_555 ? ? ? ? ? ? ? 1.327 ? ?
covale5 covale both ? A GHP 4 C ? ? ? 1_555 A GHP 5 N ? ? A GHP 4 A GHP 5 1_555 ? ? ? ? ? ? ? 1.327 ? ?
covale6 covale none ? A GHP 4 C3 ? ? ? 1_555 A OMY 6 OCZ ? ? A GHP 4 A OMY 6 1_555 ? ? ? ? ? ? ? 1.396 ? ?
covale7 covale one ? A GHP 4 O4 ? ? ? 1_555 C BGC . C1 ? ? A GHP 4 C BGC 1 1_555 ? ? ? ? ? ? ? 1.386 ? ?
covale8 covale both ? A GHP 5 C ? ? ? 1_555 A OMY 6 N ? ? A GHP 5 A OMY 6 1_555 ? ? ? ? ? ? ? 1.323 ? ?
covale9 covale none ? A GHP 5 C3 ? ? ? 1_555 A 3FG 7 CG1 ? ? A GHP 5 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.496 ? ?
covale10 covale both ? A OMY 6 C ? ? ? 1_555 A 3FG 7 N ? ? A OMY 6 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.318 ? ?
covale11 covale both ? B MLU 1 C ? ? ? 1_555 B OMZ 2 N ? ? B MLU 1 B OMZ 2 1_555 ? ? ? ? ? ? ? 1.317 ? ?
covale12 covale both ? B OMZ 2 C ? ? ? 1_555 B ASN 3 N ? ? B OMZ 2 B ASN 3 1_555 ? ? ? ? ? ? ? 1.307 ? ?
covale13 covale none ? B OMZ 2 OH ? ? ? 1_555 B GHP 4 C5 ? ? B OMZ 2 B GHP 4 1_555 ? ? ? ? ? ? ? 1.376 ? ?
covale14 covale both ? B ASN 3 C ? ? ? 1_555 B GHP 4 N ? ? B ASN 3 B GHP 4 1_555 ? ? ? ? ? ? ? 1.321 ? ?
covale15 covale both ? B GHP 4 C ? ? ? 1_555 B GHP 5 N ? ? B GHP 4 B GHP 5 1_555 ? ? ? ? ? ? ? 1.333 ? ?
covale16 covale none ? B GHP 4 C3 ? ? ? 1_555 B OMY 6 OCZ ? ? B GHP 4 B OMY 6 1_555 ? ? ? ? ? ? ? 1.424 ? ?
covale17 covale one ? B GHP 4 O4 ? ? ? 1_555 D BGC . C1 ? ? B GHP 4 D BGC 1 1_555 ? ? ? ? ? ? ? 1.372 ? ?
covale18 covale both ? B GHP 5 C ? ? ? 1_555 B OMY 6 N ? ? B GHP 5 B OMY 6 1_555 ? ? ? ? ? ? ? 1.335 ? ?
covale19 covale none ? B GHP 5 C3 ? ? ? 1_555 B 3FG 7 CG1 ? ? B GHP 5 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.471 ? ?
covale20 covale both ? B OMY 6 C ? ? ? 1_555 B 3FG 7 N ? ? B OMY 6 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.327 ? ?
covale21 covale both ? C BGC . O2 ? ? ? 1_555 C RER . C1 ? ? C BGC 1 C RER 2 1_555 ? ? ? ? ? ? ? 1.435 ? ?
covale22 covale both ? D BGC . O2 ? ? ? 1_555 D RER . C1 ? ? D BGC 1 D RER 2 1_555 ? ? ? ? ? ? ? 1.425 ? ?
#
_struct_conn_type.id covale
_struct_conn_type.criteria ?
_struct_conn_type.reference ?
#
loop_
_struct_mon_prot_cis.pdbx_id
_struct_mon_prot_cis.label_comp_id
_struct_mon_prot_cis.label_seq_id
_struct_mon_prot_cis.label_asym_id
_struct_mon_prot_cis.label_alt_id
_struct_mon_prot_cis.pdbx_PDB_ins_code
_struct_mon_prot_cis.auth_comp_id
_struct_mon_prot_cis.auth_seq_id
_struct_mon_prot_cis.auth_asym_id
_struct_mon_prot_cis.pdbx_label_comp_id_2
_struct_mon_prot_cis.pdbx_label_seq_id_2
_struct_mon_prot_cis.pdbx_label_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_ins_code_2
_struct_mon_prot_cis.pdbx_auth_comp_id_2
_struct_mon_prot_cis.pdbx_auth_seq_id_2
_struct_mon_prot_cis.pdbx_auth_asym_id_2
_struct_mon_prot_cis.pdbx_PDB_model_num
_struct_mon_prot_cis.pdbx_omega_angle
1 GHP 5 A . ? GHP 5 A OMY 6 A ? OMY 6 A 1 5.48
2 GHP 5 B . ? GHP 5 B OMY 6 B ? OMY 6 B 1 18.56
#
_database_PDB_matrix.entry_id 1SHO
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 1SHO
_atom_sites.fract_transf_matrix[1][1] 0.035112
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.035112
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.015191
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
CL
N
O
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 MLU 1 1 1 MLU MLU A . n
A 1 2 OMZ 2 2 2 OMZ OMZ A . n
A 1 3 ASN 3 3 3 ASN ASN A . n
A 1 4 GHP 4 4 4 GHP GHP A . n
A 1 5 GHP 5 5 5 GHP GHP A . n
A 1 6 OMY 6 6 6 OMY OMY A . n
A 1 7 3FG 7 7 7 3FG 3FG A . n
B 1 1 MLU 1 1 1 MLU MLU B . n
B 1 2 OMZ 2 2 2 OMZ OMZ B . n
B 1 3 ASN 3 3 3 ASN ASN B . n
B 1 4 GHP 4 4 4 GHP GHP B . n
B 1 5 GHP 5 5 5 GHP GHP B . n
B 1 6 OMY 6 6 6 OMY OMY B . n
B 1 7 3FG 7 7 7 3FG 3FG B . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ACT 1 10 10 ACT ACT B .
F 4 CL 1 11 11 CL CL B .
G 4 CL 1 12 12 CL CL B .
H 5 HOH 1 2001 2001 HOH HOH A .
H 5 HOH 2 2002 2002 HOH HOH A .
H 5 HOH 3 2003 2003 HOH HOH A .
H 5 HOH 4 2004 2004 HOH HOH A .
H 5 HOH 5 2005 2005 HOH HOH A .
H 5 HOH 6 2006 2006 HOH HOH A .
H 5 HOH 7 2007 2007 HOH HOH A .
H 5 HOH 8 2008 2008 HOH HOH A .
H 5 HOH 9 2009 2009 HOH HOH A .
H 5 HOH 10 2010 2010 HOH HOH A .
H 5 HOH 11 2011 2011 HOH HOH A .
H 5 HOH 12 2012 2012 HOH HOH A .
H 5 HOH 13 2013 2013 HOH HOH A .
H 5 HOH 14 2014 2014 HOH HOH A .
H 5 HOH 15 2015 2015 HOH HOH A .
H 5 HOH 16 2016 2016 HOH HOH A .
H 5 HOH 17 2017 2017 HOH HOH A .
H 5 HOH 18 2018 2018 HOH HOH A .
H 5 HOH 19 2019 2019 HOH HOH A .
H 5 HOH 20 2020 2020 HOH HOH A .
H 5 HOH 21 2021 2021 HOH HOH A .
H 5 HOH 22 2022 2022 HOH HOH A .
H 5 HOH 23 2023 2023 HOH HOH A .
H 5 HOH 24 2024 2024 HOH HOH A .
H 5 HOH 25 2025 2025 HOH HOH A .
H 5 HOH 26 2026 2026 HOH HOH A .
H 5 HOH 27 2027 2027 HOH HOH A .
H 5 HOH 28 2028 2028 HOH HOH A .
H 5 HOH 29 2029 2029 HOH HOH A .
H 5 HOH 30 2030 2030 HOH HOH A .
H 5 HOH 31 2031 2031 HOH HOH A .
H 5 HOH 32 2032 2032 HOH HOH A .
H 5 HOH 33 2033 2033 HOH HOH A .
H 5 HOH 34 2034 2034 HOH HOH A .
H 5 HOH 35 2035 2035 HOH HOH A .
H 5 HOH 36 2036 2036 HOH HOH A .
H 5 HOH 37 2037 2037 HOH HOH A .
H 5 HOH 38 2038 2038 HOH HOH A .
H 5 HOH 39 2039 2039 HOH HOH A .
H 5 HOH 40 2040 2040 HOH HOH A .
H 5 HOH 41 2041 2041 HOH HOH A .
H 5 HOH 42 2042 2042 HOH HOH A .
H 5 HOH 43 2043 2043 HOH HOH A .
H 5 HOH 44 2044 2044 HOH HOH A .
H 5 HOH 45 2045 2045 HOH HOH A .
H 5 HOH 46 2046 2046 HOH HOH A .
H 5 HOH 47 2047 2047 HOH HOH A .
H 5 HOH 48 2048 2048 HOH HOH A .
H 5 HOH 49 2049 2049 HOH HOH A .
H 5 HOH 50 2050 2050 HOH HOH A .
H 5 HOH 51 2051 2051 HOH HOH A .
H 5 HOH 52 2052 2052 HOH HOH A .
H 5 HOH 53 2053 2053 HOH HOH A .
H 5 HOH 54 2054 2054 HOH HOH A .
H 5 HOH 55 2055 2055 HOH HOH A .
H 5 HOH 56 2056 2056 HOH HOH A .
H 5 HOH 57 2057 2057 HOH HOH A .
H 5 HOH 58 2058 2058 HOH HOH A .
H 5 HOH 59 2059 2059 HOH HOH A .
H 5 HOH 60 2060 2060 HOH HOH A .
I 5 HOH 1 2001 2001 HOH HOH B .
I 5 HOH 2 2002 2002 HOH HOH B .
I 5 HOH 3 2003 2003 HOH HOH B .
I 5 HOH 4 2004 2004 HOH HOH B .
I 5 HOH 5 2005 2005 HOH HOH B .
I 5 HOH 6 2006 2006 HOH HOH B .
I 5 HOH 7 2007 2007 HOH HOH B .
I 5 HOH 8 2008 2008 HOH HOH B .
I 5 HOH 9 2009 2009 HOH HOH B .
I 5 HOH 10 2010 2010 HOH HOH B .
I 5 HOH 11 2011 2011 HOH HOH B .
I 5 HOH 12 2012 2012 HOH HOH B .
I 5 HOH 13 2013 2013 HOH HOH B .
I 5 HOH 14 2014 2014 HOH HOH B .
I 5 HOH 15 2015 2015 HOH HOH B .
I 5 HOH 16 2016 2016 HOH HOH B .
I 5 HOH 17 2017 2017 HOH HOH B .
I 5 HOH 18 2018 2018 HOH HOH B .
I 5 HOH 19 2019 2019 HOH HOH B .
I 5 HOH 20 2020 2020 HOH HOH B .
I 5 HOH 21 2021 2021 HOH HOH B .
I 5 HOH 22 2022 2022 HOH HOH B .
I 5 HOH 23 2023 2023 HOH HOH B .
I 5 HOH 24 2024 2024 HOH HOH B .
I 5 HOH 25 2025 2025 HOH HOH B .
I 5 HOH 26 2026 2026 HOH HOH B .
I 5 HOH 27 2027 2027 HOH HOH B .
I 5 HOH 28 2028 2028 HOH HOH B .
I 5 HOH 29 2029 2029 HOH HOH B .
I 5 HOH 30 2030 2030 HOH HOH B .
I 5 HOH 31 2031 2031 HOH HOH B .
I 5 HOH 32 2032 2032 HOH HOH B .
I 5 HOH 33 2033 2033 HOH HOH B .
I 5 HOH 34 2034 2034 HOH HOH B .
I 5 HOH 35 2035 2035 HOH HOH B .
I 5 HOH 36 2036 2036 HOH HOH B .
I 5 HOH 37 2037 2037 HOH HOH B .
I 5 HOH 38 2038 2038 HOH HOH B .
I 5 HOH 39 2039 2039 HOH HOH B .
I 5 HOH 40 2040 2040 HOH HOH B .
I 5 HOH 41 2041 2041 HOH HOH B .
I 5 HOH 42 2042 2042 HOH HOH B .
I 5 HOH 43 2043 2043 HOH HOH B .
I 5 HOH 44 2044 2044 HOH HOH B .
I 5 HOH 45 2045 2045 HOH HOH B .
I 5 HOH 46 2046 2046 HOH HOH B .
I 5 HOH 47 2047 2047 HOH HOH B .
I 5 HOH 48 2048 2048 HOH HOH B .
#
_pdbx_molecule_features.prd_id PRD_000204
_pdbx_molecule_features.name VANCOMYCIN
_pdbx_molecule_features.type Glycopeptide
_pdbx_molecule_features.class Antibiotic
_pdbx_molecule_features.details
;VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE,
GLYCOSYLATED BY A DISACCHARIDE (RESIDUES 8
AND 9) ON RESIDUE 4.
;
#
loop_
_pdbx_molecule.instance_id
_pdbx_molecule.prd_id
_pdbx_molecule.asym_id
1 PRD_000204 A
1 PRD_000204 C
2 PRD_000204 B
2 PRD_000204 D
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 730 ?
1 MORE -5.2 ?
1 'SSA (A^2)' 1650 ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_pdbx_struct_special_symmetry.id
_pdbx_struct_special_symmetry.PDB_model_num
_pdbx_struct_special_symmetry.auth_asym_id
_pdbx_struct_special_symmetry.auth_comp_id
_pdbx_struct_special_symmetry.auth_seq_id
_pdbx_struct_special_symmetry.PDB_ins_code
_pdbx_struct_special_symmetry.label_asym_id
_pdbx_struct_special_symmetry.label_comp_id
_pdbx_struct_special_symmetry.label_seq_id
1 1 A HOH 2035 ? H HOH .
2 1 B HOH 2016 ? I HOH .
3 1 B HOH 2017 ? I HOH .
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1997-12-24
2 'Structure model' 1 1 2011-06-14
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2011-07-27
5 'Structure model' 1 4 2012-12-12
6 'Structure model' 2 0 2020-07-29
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 6 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Version format compliance'
3 4 'Structure model' 'Atomic model'
4 4 'Structure model' 'Database references'
5 4 'Structure model' 'Derived calculations'
6 4 'Structure model' 'Non-polymer description'
7 4 'Structure model' 'Structure summary'
8 5 'Structure model' Other
9 6 'Structure model' 'Atomic model'
10 6 'Structure model' 'Data collection'
11 6 'Structure model' 'Derived calculations'
12 6 'Structure model' Other
13 6 'Structure model' 'Polymer sequence'
14 6 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 6 'Structure model' atom_site
2 6 'Structure model' atom_site_anisotrop
3 6 'Structure model' chem_comp
4 6 'Structure model' diffrn_source
5 6 'Structure model' entity
6 6 'Structure model' entity_poly
7 6 'Structure model' pdbx_branch_scheme
8 6 'Structure model' pdbx_chem_comp_identifier
9 6 'Structure model' pdbx_database_status
10 6 'Structure model' pdbx_entity_branch
11 6 'Structure model' pdbx_entity_branch_descriptor
12 6 'Structure model' pdbx_entity_branch_link
13 6 'Structure model' pdbx_entity_branch_list
14 6 'Structure model' pdbx_entity_nonpoly
15 6 'Structure model' pdbx_molecule
16 6 'Structure model' pdbx_nonpoly_scheme
17 6 'Structure model' pdbx_struct_assembly
18 6 'Structure model' pdbx_struct_assembly_gen
19 6 'Structure model' pdbx_struct_special_symmetry
20 6 'Structure model' struct_asym
21 6 'Structure model' struct_conn
22 6 'Structure model' struct_site
23 6 'Structure model' struct_site_gen
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 6 'Structure model' '_atom_site.auth_asym_id'
2 6 'Structure model' '_atom_site.auth_seq_id'
3 6 'Structure model' '_atom_site.label_asym_id'
4 6 'Structure model' '_atom_site.label_entity_id'
5 6 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id'
6 6 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id'
7 6 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id'
8 6 'Structure model' '_chem_comp.name'
9 6 'Structure model' '_chem_comp.type'
10 6 'Structure model' '_diffrn_source.pdbx_synchrotron_site'
11 6 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can'
12 6 'Structure model' '_pdbx_database_status.process_site'
13 6 'Structure model' '_pdbx_struct_assembly.method_details'
14 6 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list'
15 6 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id'
16 6 'Structure model' '_struct_conn.pdbx_dist_value'
17 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
18 6 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
19 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
20 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
21 6 'Structure model' '_struct_conn.ptnr1_label_asym_id'
22 6 'Structure model' '_struct_conn.ptnr1_label_atom_id'
23 6 'Structure model' '_struct_conn.ptnr1_label_comp_id'
24 6 'Structure model' '_struct_conn.ptnr1_label_seq_id'
25 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
26 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
27 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
28 6 'Structure model' '_struct_conn.ptnr2_label_asym_id'
29 6 'Structure model' '_struct_conn.ptnr2_label_atom_id'
30 6 'Structure model' '_struct_conn.ptnr2_label_comp_id'
31 6 'Structure model' '_struct_conn.ptnr2_label_seq_id'
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
SHELX-96 'model building' . ? 1
SHELXL-96 refinement . ? 2
DENZO 'data reduction' . ? 3
SCALEPACK 'data scaling' . ? 4
SHELX-96 phasing . ? 5
#
_pdbx_entry_details.entry_id 1SHO
_pdbx_entry_details.compound_details
;VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE. THE SCAFFOLD IS
A HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L. IT IS
FURTHER GLYCOSYLATED BY A DISACCHARIDE MADE OF D-GLUCOSE
AND VANCOSAMINE.
HERE, VANCOMYCIN IS REPRESENTED BY GROUPING TOUGHER THE
SEQUENCE (SEQRES) AND THE TWO LIGANDS (HET) BGC AND RER.
;
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
#
_pdbx_validate_torsion.id 1
_pdbx_validate_torsion.PDB_model_num 1
_pdbx_validate_torsion.auth_comp_id ASN
_pdbx_validate_torsion.auth_asym_id A
_pdbx_validate_torsion.auth_seq_id 3
_pdbx_validate_torsion.PDB_ins_code ?
_pdbx_validate_torsion.label_alt_id ?
_pdbx_validate_torsion.phi -101.95
_pdbx_validate_torsion.psi -69.71
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
C 2 BGC 1 C BGC 1 A BGC 8 n
C 2 RER 2 C RER 2 A RER 9 n
D 2 BGC 1 D BGC 1 B BGC 8 n
D 2 RER 2 D RER 2 B RER 9 n
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb
BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose
BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp
BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc
#
_pdbx_entity_branch.entity_id 2
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 'WURCS=2.0/2,2,1/[a2122h-1b_1-5][ad621m-1a_1-5_3*C_3*N]/1-2/a2-b1' WURCS PDB2Glycan 1.1.0
2 2 '[][D-1-deoxy-Glcp]{[(2+1)][a-L-2-deoxy-Fucp3N]{}}' LINUCS PDB-CARE ?
#
_pdbx_entity_branch_link.link_id 1
_pdbx_entity_branch_link.entity_id 2
_pdbx_entity_branch_link.entity_branch_list_num_1 2
_pdbx_entity_branch_link.comp_id_1 RER
_pdbx_entity_branch_link.atom_id_1 C1
_pdbx_entity_branch_link.leaving_atom_id_1 O1
_pdbx_entity_branch_link.entity_branch_list_num_2 1
_pdbx_entity_branch_link.comp_id_2 BGC
_pdbx_entity_branch_link.atom_id_2 O2
_pdbx_entity_branch_link.leaving_atom_id_2 HO2
_pdbx_entity_branch_link.value_order sing
_pdbx_entity_branch_link.details ?
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 BGC 1 n
2 RER 2 n
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3 'ACETATE ION' ACT
4 'CHLORIDE ION' CL
5 water HOH
#