HEADER LIPID BINDING PROTEIN 02-MAR-04 1SIY TITLE NMR STRUCTURE OF MUNG BEAN NON-SPECIFIC LIPID TRANSFER PROTEIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NONSPECIFIC LIPID-TRANSFER PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LTP 1, NS-LTP1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIGNA RADIATA VAR. RADIATA; SOURCE 3 ORGANISM_COMMON: MUNG BEAN; SOURCE 4 ORGANISM_TAXID: 3916; SOURCE 5 STRAIN: VAR. RADIATA KEYWDS ALPHA HELIX, LIPID BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR K.F.LIN,Y.N.LIU,S.T.D.HSU,D.SAMUEL,C.S.CHENG,A.M.J.J.BONVIN,P.C.LYU REVDAT 7 23-OCT-24 1SIY 1 REMARK REVDAT 6 02-MAR-22 1SIY 1 REMARK REVDAT 5 21-APR-09 1SIY 1 REMARK REVDAT REVDAT 4 24-FEB-09 1SIY 1 VERSN REVDAT 3 19-APR-05 1SIY 1 JRNL REVDAT 2 12-APR-05 1SIY 1 DBREF REVDAT 1 05-APR-05 1SIY 0 JRNL AUTH K.F.LIN,Y.N.LIU,S.T.D.HSU,D.SAMUEL,C.S.CHENG,A.M.J.J.BONVIN, JRNL AUTH 2 P.C.LYU JRNL TITL CHARACTERIZATION AND STRUCTURAL ANALYSES OF NONSPECIFIC JRNL TITL 2 LIPID TRANSFER PROTEIN 1 FROM MUNG BEAN JRNL REF BIOCHEMISTRY V. 44 5703 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15823028 JRNL DOI 10.1021/BI047608V REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.1, ARIA 2.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE CALCULATED FROM 1675 REMARK 3 ASSIGNED NOE. 4 DISULFIDE BONDS ARE SHOWN REMARK 4 REMARK 4 1SIY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021743. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.0 REMARK 210 IONIC STRENGTH : 20MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3MM LTP1; 20MM PHOSPHATE BUFFER REMARK 210 NA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.8, ARIA 2.0, SPARKY 3.0 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 16 -43.91 -146.71 REMARK 500 1 PRO A 25 4.95 -69.30 REMARK 500 1 ARG A 39 -58.41 79.47 REMARK 500 1 VAL A 58 98.64 -56.30 REMARK 500 1 ASN A 86 109.02 65.45 REMARK 500 2 CYS A 3 -24.06 73.33 REMARK 500 2 GLN A 18 -76.85 -70.32 REMARK 500 2 LYS A 19 84.09 -150.81 REMARK 500 2 ASN A 62 116.41 65.15 REMARK 500 2 ASN A 76 71.02 48.51 REMARK 500 2 SER A 89 -78.32 -118.09 REMARK 500 2 ILE A 90 -135.31 36.71 REMARK 500 3 CYS A 3 -23.65 71.35 REMARK 500 3 LEU A 35 -72.76 -81.40 REMARK 500 3 ARG A 39 -64.99 88.54 REMARK 500 3 ASN A 76 95.26 50.74 REMARK 500 3 PRO A 78 -159.16 -73.21 REMARK 500 3 TYR A 79 -164.94 47.91 REMARK 500 3 SER A 89 -73.50 -117.62 REMARK 500 3 ILE A 90 -119.37 35.25 REMARK 500 4 CYS A 3 3.53 -69.31 REMARK 500 4 PHE A 16 -42.70 -157.65 REMARK 500 4 LYS A 19 -79.02 -84.43 REMARK 500 4 ASN A 36 -47.75 -139.36 REMARK 500 4 SER A 38 96.87 -61.88 REMARK 500 4 ARG A 39 -71.27 -55.20 REMARK 500 4 ARG A 45 32.20 -79.91 REMARK 500 4 ALA A 46 -43.87 -137.03 REMARK 500 4 ASN A 62 98.62 40.38 REMARK 500 4 VAL A 75 72.29 -112.52 REMARK 500 5 ASN A 36 -54.43 -167.95 REMARK 500 5 ARG A 39 -80.35 -77.56 REMARK 500 5 ARG A 44 -47.38 -131.27 REMARK 500 5 VAL A 75 -56.82 -123.18 REMARK 500 5 ASN A 76 111.56 65.04 REMARK 500 5 ASN A 86 43.08 -77.13 REMARK 500 5 SER A 89 -75.15 -122.10 REMARK 500 5 ILE A 90 -134.45 35.44 REMARK 500 6 CYS A 3 7.90 -68.71 REMARK 500 6 VAL A 22 126.25 62.82 REMARK 500 6 LEU A 35 -62.63 -93.46 REMARK 500 6 ASN A 62 97.48 55.76 REMARK 500 6 SER A 89 -89.18 -134.22 REMARK 500 6 ILE A 90 -159.08 39.37 REMARK 500 7 LEU A 35 -70.97 -92.52 REMARK 500 7 THR A 40 -173.83 -174.76 REMARK 500 7 ILE A 61 -81.62 -89.14 REMARK 500 7 ASN A 62 106.21 99.30 REMARK 500 7 VAL A 75 -88.69 -123.89 REMARK 500 7 ASN A 76 134.45 68.80 REMARK 500 REMARK 500 THIS ENTRY HAS 111 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6089 RELATED DB: BMRB REMARK 900 RELEASED CHEMICAL SHIFT OF THE SAME PROTEIN DBREF 1SIY A 1 91 UNP P83434 NLTP1_PHAAU 1 91 SEQRES 1 A 91 MET THR CYS GLY GLN VAL GLN GLY ASN LEU ALA GLN CYS SEQRES 2 A 91 ILE GLY PHE LEU GLN LYS GLY GLY VAL VAL PRO PRO SER SEQRES 3 A 91 CYS CYS THR GLY VAL LYS ASN ILE LEU ASN SER SER ARG SEQRES 4 A 91 THR THR ALA ASP ARG ARG ALA VAL CYS SER CYS LEU LYS SEQRES 5 A 91 ALA ALA ALA GLY ALA VAL ARG GLY ILE ASN PRO ASN ASN SEQRES 6 A 91 ALA GLU ALA LEU PRO GLY LYS CYS GLY VAL ASN ILE PRO SEQRES 7 A 91 TYR LYS ILE SER THR SER THR ASN CYS ASN SER ILE ASN HELIX 1 1 VAL A 6 GLN A 18 1 13 HELIX 2 2 PRO A 24 ASN A 36 1 13 HELIX 3 3 THR A 41 ALA A 55 1 15 HELIX 4 4 ASN A 62 GLY A 74 1 13 SSBOND 1 CYS A 3 CYS A 50 1555 1555 2.03 SSBOND 2 CYS A 13 CYS A 27 1555 1555 2.03 SSBOND 3 CYS A 28 CYS A 73 1555 1555 2.04 SSBOND 4 CYS A 48 CYS A 87 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1