HEADER ELECTRON TRANSPORT 03-MAR-04 1SJG TITLE SOLUTION STRUCTURE OF T4MOC, THE RIESKE FERREDOXIN COMPONENT OF THE TITLE 2 TOLUENE 4-MONOOXYGENASE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLUENE-4-MONOOXYGENASE SYSTEM PROTEIN C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: T4MOC; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS MENDOCINA; SOURCE 3 ORGANISM_TAXID: 300; SOURCE 4 STRAIN: KR1; SOURCE 5 GENE: TMOC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PJP01 KEYWDS RIESKE [2FE-2S] DOMAIN, FERREDOXIN, PFAM PF00355, ELECTRON TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.SKJELDAL,F.C.PETERSON,J.F.DORELEIJERS,L.A.MOE,J.D.PIKUS, AUTHOR 2 B.F.VOLKMAN,W.M.WESTLER,J.L.MARKLEY,B.G.FOX REVDAT 5 01-MAY-24 1SJG 1 REMARK LINK REVDAT 4 09-MAR-11 1SJG 1 REMARK REVDAT 3 24-FEB-09 1SJG 1 VERSN REVDAT 2 28-DEC-04 1SJG 1 JRNL REVDAT 1 07-SEP-04 1SJG 0 JRNL AUTH L.SKJELDAL,F.C.PETERSON,J.F.DORELEIJERS,L.A.MOE,J.D.PIKUS, JRNL AUTH 2 W.M.WESTLER,J.L.MARKLEY,B.F.VOLKMAN,B.G.FOX JRNL TITL SOLUTION STRUCTURE OF T4MOC, THE RIESKE FERREDOXIN COMPONENT JRNL TITL 2 OF THE TOLUENE 4-MONOOXYGENASE COMPLEX JRNL REF J.BIOL.INORG.CHEM. V. 9 945 2004 JRNL REFN ISSN 0949-8257 JRNL PMID 15452777 JRNL DOI 10.1007/S00775-004-0594-4 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.D.PIKUS,J.M.STUDTS,C.ACHIM,K.E.KAUFFMANN,E.MUNCK, REMARK 1 AUTH 2 R.J.STEFFAN,K.MCCLAY,B.G.FOX REMARK 1 TITL RECOMBINANT TOLUENE-4-MONOOXYGENASE: CATALYTIC AND MOSSBAUER REMARK 1 TITL 2 STUDIES OF THE PURIFIED DIIRON AND RIESKE COMPONENTS OF A REMARK 1 TITL 3 FOUR-PROTEIN COMPLEX REMARK 1 REF BIOCHEMISTRY V. 35 9106 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 8703915 REMARK 1 DOI 10.1021/BI960456M REMARK 1 REFERENCE 2 REMARK 1 AUTH B.XIA,J.D.PIKUS,W.XIA,K.MCCLAY,R.J.STEFFAN,Y.K.CHAE, REMARK 1 AUTH 2 W.M.WESTLER,J.L.MARKLEY,B.G.FOX REMARK 1 TITL DETECTION AND CLASSIFICATION OF HYPERFINE-SHIFTED 1H, 2H, REMARK 1 TITL 2 AND 15N RESONANCES OF THE RIESKE FERREDOXIN COMPONENT FROM REMARK 1 TITL 3 TOLUENE 4-MONOOXYGENASE REMARK 1 REF BIOCHEMISTRY V. 38 727 1999 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 9888813 REMARK 1 DOI 10.1021/BI981851A REMARK 1 REFERENCE 3 REMARK 1 AUTH J.M.STUDTS,B.G.FOX REMARK 1 TITL APPLICATION OF FED-BATCH FERMENTATION TO THE PREPARATION OF REMARK 1 TITL 2 ISOTOPICALLY LABELED OR SELENOMETHIONYL-LABELED PROTEINS REMARK 1 REF PROTEIN EXPR.PURIF. V. 16 109 1999 REMARK 1 REFN ISSN 1046-5928 REMARK 1 PMID 10336868 REMARK 1 DOI 10.1006/PREP.1999.1067 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 95, CYANA 1, TALOS 1 REMARK 3 AUTHORS : MOLECULAR SIMULATIONS, INC (FELIX), GNTERT REMARK 3 (CYANA), CORNILESCU (TALOS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SJG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021761. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : 20 MM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM PHOSPHATE, 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; HNCA-J; REMARK 210 3D_13C-SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CANDID 1, XPLOR-NIH 1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 68 H THR A 70 1.58 REMARK 500 H3 MET A 1 OE1 GLU A 4 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 14 CYS A 45 CB CYS A 45 SG 0.122 REMARK 500 14 CYS A 64 CA CYS A 64 CB 0.239 REMARK 500 14 CYS A 64 CB CYS A 64 SG 0.164 REMARK 500 14 CYS A 64 CA CYS A 64 C 0.264 REMARK 500 14 ARG A 65 N ARG A 65 CA 0.193 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 14 CYS A 45 CA - CB - SG ANGL. DEV. = 8.2 DEGREES REMARK 500 14 CYS A 64 CB - CA - C ANGL. DEV. = 13.2 DEGREES REMARK 500 14 CYS A 64 CA - CB - SG ANGL. DEV. = 9.8 DEGREES REMARK 500 14 ARG A 65 C - N - CA ANGL. DEV. = 15.8 DEGREES REMARK 500 14 HIS A 67 CA - CB - CG ANGL. DEV. = 12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 46 105.44 -50.06 REMARK 500 1 TRP A 69 -31.91 35.94 REMARK 500 1 ASN A 80 113.96 -160.68 REMARK 500 1 ALA A 110 -63.78 178.24 REMARK 500 1 HIS A 111 -164.95 56.23 REMARK 500 2 PHE A 3 97.97 58.28 REMARK 500 2 PRO A 46 42.25 -78.47 REMARK 500 2 HIS A 47 -67.00 -96.26 REMARK 500 2 GLN A 48 -35.62 -161.70 REMARK 500 2 LEU A 51 41.85 -89.26 REMARK 500 2 CYS A 64 -72.11 -63.85 REMARK 500 2 ARG A 65 104.85 161.05 REMARK 500 2 LEU A 68 82.74 58.15 REMARK 500 2 THR A 75 -47.98 -148.78 REMARK 500 2 ASP A 96 -6.40 72.23 REMARK 500 2 LYS A 109 -53.32 64.10 REMARK 500 2 ALA A 110 -156.80 -86.59 REMARK 500 3 PHE A 3 103.41 68.70 REMARK 500 3 PRO A 46 42.50 -1.44 REMARK 500 3 GLN A 48 123.70 68.31 REMARK 500 3 SER A 56 -73.29 -130.76 REMARK 500 3 LEU A 68 -95.25 -157.56 REMARK 500 3 TRP A 69 -16.46 172.96 REMARK 500 3 LYS A 109 -87.46 49.66 REMARK 500 3 ALA A 110 -156.95 44.99 REMARK 500 3 HIS A 111 116.33 69.22 REMARK 500 4 SER A 2 -145.93 -148.70 REMARK 500 4 CYS A 7 -173.79 -171.98 REMARK 500 4 CYS A 45 85.57 -159.25 REMARK 500 4 GLU A 49 100.05 -52.16 REMARK 500 4 ILE A 50 -79.84 63.75 REMARK 500 4 ARG A 65 80.95 46.39 REMARK 500 4 ALA A 66 -45.40 174.02 REMARK 500 4 TRP A 69 -69.45 -96.71 REMARK 500 4 ASP A 96 -19.53 78.92 REMARK 500 4 HIS A 111 97.98 -64.31 REMARK 500 5 SER A 2 -87.95 60.63 REMARK 500 5 GLN A 48 -63.89 -140.95 REMARK 500 5 ILE A 50 -161.57 -108.42 REMARK 500 5 ARG A 65 107.00 -49.82 REMARK 500 5 LEU A 68 -170.34 64.95 REMARK 500 5 THR A 75 -38.62 -151.40 REMARK 500 5 ASN A 80 105.49 159.34 REMARK 500 5 LYS A 109 -169.16 57.00 REMARK 500 5 ALA A 110 -167.53 65.40 REMARK 500 5 HIS A 111 116.09 74.12 REMARK 500 6 SER A 2 -60.49 -159.13 REMARK 500 6 PRO A 46 21.78 -76.15 REMARK 500 6 GLN A 48 -172.11 60.11 REMARK 500 6 GLU A 49 -48.88 -161.66 REMARK 500 REMARK 500 THIS ENTRY HAS 203 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 113 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 45 SG REMARK 620 2 FES A 113 S1 111.4 REMARK 620 3 FES A 113 S2 111.1 108.8 REMARK 620 4 CYS A 64 SG 114.5 104.5 106.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 113 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 47 ND1 REMARK 620 2 FES A 113 S1 110.9 REMARK 620 3 FES A 113 S2 110.6 106.2 REMARK 620 4 HIS A 67 ND1 112.8 107.6 108.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES A 113 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FQT RELATED DB: PDB REMARK 900 BPHF, RIESKE FERREDOXIN OF BIPHENYL DIOXYGENASE DBREF 1SJG A 1 112 UNP Q00458 TMOC_PSEME 0 111 SEQRES 1 A 112 MET SER PHE GLU LYS ILE CYS SER LEU ASP ASP ILE TRP SEQRES 2 A 112 VAL GLY GLU MET GLU THR PHE GLU THR SER ASP GLY THR SEQRES 3 A 112 GLU VAL LEU ILE VAL ASN SER GLU GLU HIS GLY VAL LYS SEQRES 4 A 112 ALA TYR GLN ALA MET CYS PRO HIS GLN GLU ILE LEU LEU SEQRES 5 A 112 SER GLU GLY SER TYR GLU GLY GLY VAL ILE THR CYS ARG SEQRES 6 A 112 ALA HIS LEU TRP THR PHE ASN ASP GLY THR GLY HIS GLY SEQRES 7 A 112 ILE ASN PRO ASP ASP CYS CYS LEU ALA GLU TYR PRO VAL SEQRES 8 A 112 GLU VAL LYS GLY ASP ASP ILE TYR VAL SER THR LYS GLY SEQRES 9 A 112 ILE LEU PRO ASN LYS ALA HIS SER HET FES A 113 4 HETNAM FES FE2/S2 (INORGANIC) CLUSTER FORMUL 2 FES FE2 S2 HELIX 1 1 LEU A 51 GLY A 55 5 5 SHEET 1 A 3 PHE A 3 SER A 8 0 SHEET 2 A 3 ASP A 97 SER A 101 -1 O VAL A 100 N GLU A 4 SHEET 3 A 3 VAL A 91 LYS A 94 -1 N GLU A 92 O TYR A 99 SHEET 1 B 4 GLU A 16 GLU A 21 0 SHEET 2 B 4 GLU A 27 ASN A 32 -1 O VAL A 28 N PHE A 20 SHEET 3 B 4 VAL A 38 GLN A 42 -1 O TYR A 41 N LEU A 29 SHEET 4 B 4 GLU A 88 TYR A 89 -1 O TYR A 89 N ALA A 40 SHEET 1 C 4 TYR A 57 GLU A 58 0 SHEET 2 C 4 VAL A 61 THR A 63 -1 O VAL A 61 N GLU A 58 SHEET 3 C 4 THR A 70 ASN A 72 -1 O PHE A 71 N ILE A 62 SHEET 4 C 4 HIS A 77 GLY A 78 -1 O HIS A 77 N ASN A 72 LINK SG CYS A 45 FE1 FES A 113 1555 1555 2.32 LINK ND1 HIS A 47 FE2 FES A 113 1555 1555 2.13 LINK SG CYS A 64 FE1 FES A 113 1555 1555 2.24 LINK ND1 HIS A 67 FE2 FES A 113 1555 1555 2.12 CISPEP 1 ASN A 80 PRO A 81 1 4.35 CISPEP 2 ASN A 80 PRO A 81 2 -1.02 CISPEP 3 ASN A 80 PRO A 81 3 3.31 CISPEP 4 ASN A 80 PRO A 81 4 -0.52 CISPEP 5 ASN A 80 PRO A 81 5 1.04 CISPEP 6 ASN A 80 PRO A 81 6 0.38 CISPEP 7 ASN A 80 PRO A 81 7 -0.14 CISPEP 8 ASN A 80 PRO A 81 8 -4.36 CISPEP 9 ASN A 80 PRO A 81 9 1.06 CISPEP 10 ASN A 80 PRO A 81 10 -3.05 CISPEP 11 ASN A 80 PRO A 81 11 -4.47 CISPEP 12 ASN A 80 PRO A 81 12 -1.09 CISPEP 13 ASN A 80 PRO A 81 13 -3.91 CISPEP 14 ASN A 80 PRO A 81 14 0.22 CISPEP 15 ASN A 80 PRO A 81 15 -3.99 CISPEP 16 ASN A 80 PRO A 81 16 -0.87 CISPEP 17 ASN A 80 PRO A 81 17 -2.32 CISPEP 18 ASN A 80 PRO A 81 18 -1.32 CISPEP 19 ASN A 80 PRO A 81 19 -2.39 CISPEP 20 ASN A 80 PRO A 81 20 0.11 SITE 1 AC1 8 CYS A 45 PRO A 46 HIS A 47 CYS A 64 SITE 2 AC1 8 ARG A 65 ALA A 66 HIS A 67 CYS A 84 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1