data_1SM5
# 
_entry.id   1SM5 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.386 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1SM5         pdb_00001sm5 10.2210/pdb1sm5/pdb 
NDB   UD0053       ?            ?                   
RCSB  RCSB021821   ?            ?                   
WWPDB D_1000021821 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2004-05-25 
2 'Structure model' 1 1 2008-04-29 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2024-02-14 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Data collection'           
4 4 'Structure model' 'Database references'       
5 4 'Structure model' 'Derived calculations'      
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' chem_comp_atom 
2 4 'Structure model' chem_comp_bond 
3 4 'Structure model' database_2     
4 4 'Structure model' struct_conn    
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  4 'Structure model' '_database_2.pdbx_DOI'                
2  4 'Structure model' '_database_2.pdbx_database_accession' 
3  4 'Structure model' '_struct_conn.pdbx_dist_value'        
4  4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 
5  4 'Structure model' '_struct_conn.ptnr1_auth_asym_id'     
6  4 'Structure model' '_struct_conn.ptnr1_auth_comp_id'     
7  4 'Structure model' '_struct_conn.ptnr1_auth_seq_id'      
8  4 'Structure model' '_struct_conn.ptnr1_label_asym_id'    
9  4 'Structure model' '_struct_conn.ptnr1_label_atom_id'    
10 4 'Structure model' '_struct_conn.ptnr1_label_comp_id'    
11 4 'Structure model' '_struct_conn.ptnr1_label_seq_id'     
12 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id'     
13 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id'     
14 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id'      
15 4 'Structure model' '_struct_conn.ptnr2_label_asym_id'    
16 4 'Structure model' '_struct_conn.ptnr2_label_atom_id'    
17 4 'Structure model' '_struct_conn.ptnr2_label_comp_id'    
18 4 'Structure model' '_struct_conn.ptnr2_label_seq_id'     
# 
_pdbx_database_PDB_obs_spr.id               SPRSDE 
_pdbx_database_PDB_obs_spr.date             2004-05-25 
_pdbx_database_PDB_obs_spr.pdb_id           1SM5 
_pdbx_database_PDB_obs_spr.replace_pdb_id   1MV7 
_pdbx_database_PDB_obs_spr.details          ? 
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1SM5 
_pdbx_database_status.recvd_initial_deposition_date   2004-03-08 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.status_code_nmr_data            ? 
_pdbx_database_status.methods_development_category    ? 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Park, H.'      1 
'Zhang, K.'     2 
'Ren, Y.'       3 
'Nadji, S.'     4 
'Sinha, N.'     5 
'Taylor, J.-S.' 6 
'Kang, C.'      7 
# 
_citation.id                        primary 
_citation.title                     'Crystal Structure of a DNA Decamer Containing a Thymine-dimer' 
_citation.journal_abbrev            Proc.Natl.Acad.Sci.USA 
_citation.journal_volume            99 
_citation.page_first                15965 
_citation.page_last                 15970 
_citation.year                      2002 
_citation.journal_id_ASTM           PNASA6 
_citation.country                   US 
_citation.journal_id_ISSN           0027-8424 
_citation.journal_id_CSD            0040 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   12456887 
_citation.pdbx_database_id_DOI      10.1073/pnas.242422699 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Park, H.'      1 ? 
primary 'Zhang, K.'     2 ? 
primary 'Ren, Y.'       3 ? 
primary 'Nadji, S.'     4 ? 
primary 'Sinha, N.'     5 ? 
primary 'Taylor, J.-S.' 6 ? 
primary 'Kang, C.'      7 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer syn "5'-D(*GP*CP*(BRU)P*TP*AP*AP*TP*(BRU)P*CP*G)-3'" 3164.742 2  ? ? ? ? 
2 polymer syn "5'-D(*CP*GP*AP*AP*TP*TP*AP*AP*GP*C)-3'"         3053.031 2  ? ? ? ? 
3 water   nat water                                            18.015   52 ? ? ? ? 
# 
loop_
_entity_poly.entity_id 
_entity_poly.type 
_entity_poly.nstd_linkage 
_entity_poly.nstd_monomer 
_entity_poly.pdbx_seq_one_letter_code 
_entity_poly.pdbx_seq_one_letter_code_can 
_entity_poly.pdbx_strand_id 
_entity_poly.pdbx_target_identifier 
1 polydeoxyribonucleotide no yes '(DG)(DC)(BRU)(DT)(DA)(DA)(DT)(BRU)(DC)(DG)' GCUTAATUCG A,C ? 
2 polydeoxyribonucleotide no no  '(DC)(DG)(DA)(DA)(DT)(DT)(DA)(DA)(DG)(DC)'   CGAATTAAGC B,D ? 
# 
_pdbx_entity_nonpoly.entity_id   3 
_pdbx_entity_nonpoly.name        water 
_pdbx_entity_nonpoly.comp_id     HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DG  n 
1 2  DC  n 
1 3  BRU n 
1 4  DT  n 
1 5  DA  n 
1 6  DA  n 
1 7  DT  n 
1 8  BRU n 
1 9  DC  n 
1 10 DG  n 
2 1  DC  n 
2 2  DG  n 
2 3  DA  n 
2 4  DA  n 
2 5  DT  n 
2 6  DT  n 
2 7  DA  n 
2 8  DA  n 
2 9  DG  n 
2 10 DC  n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE"       ? 'C10 H14 N5 O6 P'   331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"        ? 'C9 H14 N3 O7 P'    307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE"       ? 'C10 H14 N5 O7 P'   347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"               ? 'C10 H15 N2 O8 P'   322.208 
HOH non-polymer   . WATER                                      ? 'H2 O'              18.015  
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DG  1  1  1  DG  G A . n 
A 1 2  DC  2  2  2  DC  C A . n 
A 1 3  BRU 3  3  3  BRU U A . n 
A 1 4  DT  4  4  4  DT  T A . n 
A 1 5  DA  5  5  5  DA  A A . n 
A 1 6  DA  6  6  6  DA  A A . n 
A 1 7  DT  7  7  7  DT  T A . n 
A 1 8  BRU 8  8  8  BRU U A . n 
A 1 9  DC  9  9  9  DC  C A . n 
A 1 10 DG  10 10 10 DG  G A . n 
B 2 1  DC  1  1  1  DC  C B . n 
B 2 2  DG  2  2  2  DG  G B . n 
B 2 3  DA  3  3  3  DA  A B . n 
B 2 4  DA  4  4  4  DA  A B . n 
B 2 5  DT  5  5  5  DT  T B . n 
B 2 6  DT  6  6  6  DT  T B . n 
B 2 7  DA  7  7  7  DA  A B . n 
B 2 8  DA  8  8  8  DA  A B . n 
B 2 9  DG  9  9  9  DG  G B . n 
B 2 10 DC  10 10 10 DC  C B . n 
C 1 1  DG  1  1  1  DG  G C . n 
C 1 2  DC  2  2  2  DC  C C . n 
C 1 3  BRU 3  3  3  BRU U C . n 
C 1 4  DT  4  4  4  DT  T C . n 
C 1 5  DA  5  5  5  DA  A C . n 
C 1 6  DA  6  6  6  DA  A C . n 
C 1 7  DT  7  7  7  DT  T C . n 
C 1 8  BRU 8  8  8  BRU U C . n 
C 1 9  DC  9  9  9  DC  C C . n 
C 1 10 DG  10 10 10 DG  G C . n 
D 2 1  DC  1  1  1  DC  C D . n 
D 2 2  DG  2  2  2  DG  G D . n 
D 2 3  DA  3  3  3  DA  A D . n 
D 2 4  DA  4  4  4  DA  A D . n 
D 2 5  DT  5  5  5  DT  T D . n 
D 2 6  DT  6  6  6  DT  T D . n 
D 2 7  DA  7  7  7  DA  A D . n 
D 2 8  DA  8  8  8  DA  A D . n 
D 2 9  DG  9  9  9  DG  G D . n 
D 2 10 DC  10 10 10 DC  C D . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
E 3 HOH 1  206 206 HOH HOH A . 
E 3 HOH 2  209 209 HOH HOH A . 
E 3 HOH 3  220 220 HOH HOH A . 
E 3 HOH 4  222 222 HOH HOH A . 
E 3 HOH 5  223 223 HOH HOH A . 
E 3 HOH 6  224 224 HOH HOH A . 
E 3 HOH 7  229 229 HOH HOH A . 
E 3 HOH 8  230 230 HOH HOH A . 
E 3 HOH 9  233 233 HOH HOH A . 
E 3 HOH 10 235 235 HOH HOH A . 
E 3 HOH 11 241 241 HOH HOH A . 
E 3 HOH 12 242 242 HOH HOH A . 
E 3 HOH 13 245 245 HOH HOH A . 
E 3 HOH 14 247 247 HOH HOH A . 
E 3 HOH 15 250 250 HOH HOH A . 
E 3 HOH 16 252 252 HOH HOH A . 
F 3 HOH 1  201 201 HOH HOH B . 
F 3 HOH 2  203 203 HOH HOH B . 
F 3 HOH 3  208 208 HOH HOH B . 
F 3 HOH 4  210 210 HOH HOH B . 
F 3 HOH 5  214 214 HOH HOH B . 
F 3 HOH 6  225 225 HOH HOH B . 
F 3 HOH 7  228 228 HOH HOH B . 
F 3 HOH 8  234 234 HOH HOH B . 
F 3 HOH 9  236 236 HOH HOH B . 
F 3 HOH 10 237 237 HOH HOH B . 
F 3 HOH 11 239 239 HOH HOH B . 
G 3 HOH 1  207 207 HOH HOH C . 
G 3 HOH 2  211 211 HOH HOH C . 
G 3 HOH 3  212 212 HOH HOH C . 
G 3 HOH 4  213 213 HOH HOH C . 
G 3 HOH 5  215 215 HOH HOH C . 
G 3 HOH 6  216 216 HOH HOH C . 
G 3 HOH 7  217 217 HOH HOH C . 
G 3 HOH 8  218 218 HOH HOH C . 
G 3 HOH 9  226 226 HOH HOH C . 
G 3 HOH 10 232 232 HOH HOH C . 
G 3 HOH 11 244 244 HOH HOH C . 
H 3 HOH 1  202 202 HOH HOH D . 
H 3 HOH 2  204 204 HOH HOH D . 
H 3 HOH 3  205 205 HOH HOH D . 
H 3 HOH 4  219 219 HOH HOH D . 
H 3 HOH 5  221 221 HOH HOH D . 
H 3 HOH 6  227 227 HOH HOH D . 
H 3 HOH 7  231 231 HOH HOH D . 
H 3 HOH 8  238 238 HOH HOH D . 
H 3 HOH 9  240 240 HOH HOH D . 
H 3 HOH 10 243 243 HOH HOH D . 
H 3 HOH 11 246 246 HOH HOH D . 
H 3 HOH 12 248 248 HOH HOH D . 
H 3 HOH 13 249 249 HOH HOH D . 
H 3 HOH 14 251 251 HOH HOH D . 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
DENZO     'data reduction' .     ? 1 
SCALEPACK 'data scaling'   .     ? 2 
SOLVE     phasing          .     ? 3 
X-PLOR    refinement       3.851 ? 4 
# 
_cell.entry_id           1SM5 
_cell.length_a           24.5 
_cell.length_b           53.85 
_cell.length_c           75.33 
_cell.angle_alpha        90 
_cell.angle_beta         90 
_cell.angle_gamma        90 
_cell.pdbx_unique_axis   ? 
_cell.Z_PDB              8 
# 
_symmetry.entry_id                         1SM5 
_symmetry.space_group_name_H-M             'P 21 21 21' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.Int_Tables_number                19 
_symmetry.cell_setting                     ? 
# 
_exptl.entry_id          1SM5 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_percent_sol   36.22 
_exptl_crystal.description           ? 
_exptl_crystal.density_Matthews      1.93 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, HANGING DROP' 
_exptl_crystal_grow.temp            277 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              7.5 
_exptl_crystal_grow.pdbx_details    'MgCl2, HEPES-Na, PEG 400, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' 
_exptl_crystal_grow.pdbx_pH_range   . 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 MgCl2     ? ? ? 
1 2 1 HEPES-Na  ? ? ? 
1 3 1 'PEG 400' ? ? ? 
1 4 2 MgCl2     ? ? ? 
1 5 2 'PEG 400' ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           100 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               CCD 
_diffrn_detector.type                   'ADSC QUANTUM 315' 
_diffrn_detector.pdbx_collection_date   2001-12-03 
_diffrn_detector.details                'double crystal monochromator' 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    'double crystal monochromator' 
_diffrn_radiation.pdbx_diffrn_protocol             MAD 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
loop_
_diffrn_radiation_wavelength.id 
_diffrn_radiation_wavelength.wavelength 
_diffrn_radiation_wavelength.wt 
1 0.9205 1.0 
2 0.8434 1.0 
3 0.9207 1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'SSRL BEAMLINE BL9-2' 
_diffrn_source.pdbx_synchrotron_site       SSRL 
_diffrn_source.pdbx_synchrotron_beamline   BL9-2 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        '0.9205, 0.8434, 0.9207' 
# 
_reflns.entry_id                     1SM5 
_reflns.observed_criterion_sigma_F   1 
_reflns.observed_criterion_sigma_I   1 
_reflns.d_resolution_high            1.9 
_reflns.d_resolution_low             50 
_reflns.number_all                   79490 
_reflns.number_obs                   7865 
_reflns.percent_possible_obs         97.1 
_reflns.pdbx_Rmerge_I_obs            ? 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        ? 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              ? 
_reflns.R_free_details               ? 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_refine.entry_id                                 1SM5 
_refine.ls_d_res_high                            2 
_refine.ls_d_res_low                             10 
_refine.pdbx_ls_sigma_F                          2 
_refine.pdbx_ls_sigma_I                          ? 
_refine.ls_number_reflns_all                     6819 
_refine.ls_number_reflns_obs                     6447 
_refine.ls_number_reflns_R_free                  372 
_refine.ls_percent_reflns_obs                    ? 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_obs                          ? 
_refine.ls_R_factor_R_work                       0.198 
_refine.ls_R_factor_R_free                       0.254 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.ls_percent_reflns_R_free                 5 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.pdbx_method_to_determine_struct          MAD 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_ls_cross_valid_method               ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_bsol                 ? 
_refine.solvent_model_param_ksol                 ? 
_refine.occupancy_max                            ? 
_refine.occupancy_min                            ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.details                                  ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.overall_SU_B                             ? 
_refine.overall_SU_ML                            ? 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   808 
_refine_hist.pdbx_number_atoms_ligand         0 
_refine_hist.number_atoms_solvent             52 
_refine_hist.number_atoms_total               860 
_refine_hist.d_res_high                       2 
_refine_hist.d_res_low                        10 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
x_angle_deg 1.35  ? ? ? 'X-RAY DIFFRACTION' ? 
x_bond_d    0.023 ? ? ? 'X-RAY DIFFRACTION' ? 
# 
_database_PDB_matrix.entry_id          1SM5 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  1SM5 
_struct.title                     'Crystal Structure of a DNA Decamer Containing a Thymine-dimer' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1SM5 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'UV-damaged DNA, Thymine dimer, DNA decamer, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 1 ? 
D N N 2 ? 
E N N 3 ? 
F N N 3 ? 
G N N 3 ? 
H N N 3 ? 
# 
loop_
_struct_ref.id 
_struct_ref.entity_id 
_struct_ref.db_name 
_struct_ref.db_code 
_struct_ref.pdbx_db_accession 
_struct_ref.pdbx_db_isoform 
_struct_ref.pdbx_seq_one_letter_code 
_struct_ref.pdbx_align_begin 
1 1 PDB 1SM5 1SM5 ? ? ? 
2 2 PDB 1SM5 1SM5 ? ? ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 1SM5 A 1 ? 10 ? 1SM5 1 ? 10 ? 1 10 
2 2 1SM5 B 1 ? 10 ? 1SM5 1 ? 10 ? 1 10 
3 1 1SM5 C 1 ? 10 ? 1SM5 1 ? 10 ? 1 10 
4 2 1SM5 D 1 ? 10 ? 1SM5 1 ? 10 ? 1 10 
# 
loop_
_pdbx_struct_assembly.id 
_pdbx_struct_assembly.details 
_pdbx_struct_assembly.method_details 
_pdbx_struct_assembly.oligomeric_details 
_pdbx_struct_assembly.oligomeric_count 
1 author_defined_assembly ? dimeric 2 
2 author_defined_assembly ? dimeric 2 
# 
loop_
_pdbx_struct_assembly_gen.assembly_id 
_pdbx_struct_assembly_gen.oper_expression 
_pdbx_struct_assembly_gen.asym_id_list 
1 1 A,B,E,F 
2 1 C,D,G,H 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_struct_biol.id 
_struct_biol.pdbx_parent_biol_id 
_struct_biol.details 
1 ? ? 
2 ? ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale both ? A DC  2  "O3'" ? ? ? 1_555 A BRU 3  P  ? ? A DC  2  A BRU 3  1_555 ? ? ? ? ? ? ?            1.582 ? ? 
covale2  covale both ? A BRU 3  "O3'" ? ? ? 1_555 A DT  4  P  ? ? A BRU 3  A DT  4  1_555 ? ? ? ? ? ? ?            1.591 ? ? 
covale3  covale both ? A DT  7  "O3'" ? ? ? 1_555 A BRU 8  P  ? ? A DT  7  A BRU 8  1_555 ? ? ? ? ? ? ?            1.611 ? ? 
covale4  covale both ? A BRU 8  "O3'" ? ? ? 1_555 A DC  9  P  ? ? A BRU 8  A DC  9  1_555 ? ? ? ? ? ? ?            1.586 ? ? 
covale5  covale none ? B DT  5  C5    ? ? ? 1_555 B DT  6  C5 ? ? B DT  5  B DT  6  1_555 ? ? ? ? ? ? ?            1.548 ? ? 
covale6  covale none ? B DT  5  C6    ? ? ? 1_555 B DT  6  C6 ? ? B DT  5  B DT  6  1_555 ? ? ? ? ? ? ?            1.581 ? ? 
covale7  covale both ? C DC  2  "O3'" ? ? ? 1_555 C BRU 3  P  ? ? C DC  2  C BRU 3  1_555 ? ? ? ? ? ? ?            1.604 ? ? 
covale8  covale both ? C BRU 3  "O3'" ? ? ? 1_555 C DT  4  P  ? ? C BRU 3  C DT  4  1_555 ? ? ? ? ? ? ?            1.625 ? ? 
covale9  covale both ? C DT  7  "O3'" ? ? ? 1_555 C BRU 8  P  ? ? C DT  7  C BRU 8  1_555 ? ? ? ? ? ? ?            1.631 ? ? 
covale10 covale both ? C BRU 8  "O3'" ? ? ? 1_555 C DC  9  P  ? ? C BRU 8  C DC  9  1_555 ? ? ? ? ? ? ?            1.574 ? ? 
covale11 covale none ? D DT  5  C5    ? ? ? 1_555 D DT  6  C5 ? ? D DT  5  D DT  6  1_555 ? ? ? ? ? ? ?            1.553 ? ? 
covale12 covale none ? D DT  5  C6    ? ? ? 1_555 D DT  6  C6 ? ? D DT  5  D DT  6  1_555 ? ? ? ? ? ? ?            1.592 ? ? 
hydrog1  hydrog ?    ? A DG  1  N1    ? ? ? 1_555 B DC  10 N3 ? ? A DG  1  B DC  10 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ?    ? A DG  1  N2    ? ? ? 1_555 B DC  10 O2 ? ? A DG  1  B DC  10 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ?    ? A DG  1  O6    ? ? ? 1_555 B DC  10 N4 ? ? A DG  1  B DC  10 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ?    ? A DC  2  N3    ? ? ? 1_555 B DG  9  N1 ? ? A DC  2  B DG  9  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ?    ? A DC  2  N4    ? ? ? 1_555 B DG  9  O6 ? ? A DC  2  B DG  9  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ?    ? A DC  2  O2    ? ? ? 1_555 B DG  9  N2 ? ? A DC  2  B DG  9  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ?    ? A BRU 3  N3    ? ? ? 1_555 B DA  8  N1 ? ? A BRU 3  B DA  8  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ?    ? A BRU 3  O4    ? ? ? 1_555 B DA  8  N6 ? ? A BRU 3  B DA  8  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ?    ? A DT  4  N3    ? ? ? 1_555 B DA  7  N1 ? ? A DT  4  B DA  7  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ?    ? A DT  4  O4    ? ? ? 1_555 B DA  7  N6 ? ? A DT  4  B DA  7  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ?    ? A DA  5  N1    ? ? ? 1_555 B DT  6  N3 ? ? A DA  5  B DT  6  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ?    ? A DA  5  N6    ? ? ? 1_555 B DT  6  O4 ? ? A DA  5  B DT  6  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ?    ? A DA  6  N1    ? ? ? 1_555 B DT  5  N3 ? ? A DA  6  B DT  5  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ?    ? A DA  6  N6    ? ? ? 1_555 B DT  5  O4 ? ? A DA  6  B DT  5  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ?    ? A DT  7  N3    ? ? ? 1_555 B DA  4  N1 ? ? A DT  7  B DA  4  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ?    ? A DT  7  O4    ? ? ? 1_555 B DA  4  N6 ? ? A DT  7  B DA  4  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ?    ? A BRU 8  N3    ? ? ? 1_555 B DA  3  N1 ? ? A BRU 8  B DA  3  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ?    ? A BRU 8  O4    ? ? ? 1_555 B DA  3  N6 ? ? A BRU 8  B DA  3  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ?    ? A DC  9  N3    ? ? ? 1_555 B DG  2  N1 ? ? A DC  9  B DG  2  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ?    ? A DC  9  N4    ? ? ? 1_555 B DG  2  O6 ? ? A DC  9  B DG  2  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog21 hydrog ?    ? A DC  9  O2    ? ? ? 1_555 B DG  2  N2 ? ? A DC  9  B DG  2  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog22 hydrog ?    ? A DG  10 N1    ? ? ? 1_555 B DC  1  N3 ? ? A DG  10 B DC  1  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog23 hydrog ?    ? A DG  10 N2    ? ? ? 1_555 B DC  1  O2 ? ? A DG  10 B DC  1  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog24 hydrog ?    ? A DG  10 O6    ? ? ? 1_555 B DC  1  N4 ? ? A DG  10 B DC  1  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog25 hydrog ?    ? C DG  1  N1    ? ? ? 1_555 D DC  10 N3 ? ? C DG  1  D DC  10 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog26 hydrog ?    ? C DG  1  N2    ? ? ? 1_555 D DC  10 O2 ? ? C DG  1  D DC  10 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog27 hydrog ?    ? C DG  1  O6    ? ? ? 1_555 D DC  10 N4 ? ? C DG  1  D DC  10 1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog28 hydrog ?    ? C DC  2  N3    ? ? ? 1_555 D DG  9  N1 ? ? C DC  2  D DG  9  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog29 hydrog ?    ? C DC  2  N4    ? ? ? 1_555 D DG  9  O6 ? ? C DC  2  D DG  9  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog30 hydrog ?    ? C DC  2  O2    ? ? ? 1_555 D DG  9  N2 ? ? C DC  2  D DG  9  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog31 hydrog ?    ? C BRU 3  N3    ? ? ? 1_555 D DA  8  N1 ? ? C BRU 3  D DA  8  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog32 hydrog ?    ? C BRU 3  O4    ? ? ? 1_555 D DA  8  N6 ? ? C BRU 3  D DA  8  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog33 hydrog ?    ? C DT  4  N3    ? ? ? 1_555 D DA  7  N1 ? ? C DT  4  D DA  7  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog34 hydrog ?    ? C DT  4  O4    ? ? ? 1_555 D DA  7  N6 ? ? C DT  4  D DA  7  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog35 hydrog ?    ? C DA  5  N1    ? ? ? 1_555 D DT  6  N3 ? ? C DA  5  D DT  6  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog36 hydrog ?    ? C DA  5  N6    ? ? ? 1_555 D DT  6  O4 ? ? C DA  5  D DT  6  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog37 hydrog ?    ? C DA  6  N1    ? ? ? 1_555 D DT  5  N3 ? ? C DA  6  D DT  5  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog38 hydrog ?    ? C DA  6  N6    ? ? ? 1_555 D DT  5  O4 ? ? C DA  6  D DT  5  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog39 hydrog ?    ? C DT  7  N3    ? ? ? 1_555 D DA  4  N1 ? ? C DT  7  D DA  4  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog40 hydrog ?    ? C DT  7  O4    ? ? ? 1_555 D DA  4  N6 ? ? C DT  7  D DA  4  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog41 hydrog ?    ? C BRU 8  N3    ? ? ? 1_555 D DA  3  N1 ? ? C BRU 8  D DA  3  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog42 hydrog ?    ? C BRU 8  O4    ? ? ? 1_555 D DA  3  N6 ? ? C BRU 8  D DA  3  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog43 hydrog ?    ? C DC  9  N3    ? ? ? 1_555 D DG  2  N1 ? ? C DC  9  D DG  2  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog44 hydrog ?    ? C DC  9  N4    ? ? ? 1_555 D DG  2  O6 ? ? C DC  9  D DG  2  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog45 hydrog ?    ? C DC  9  O2    ? ? ? 1_555 D DG  2  N2 ? ? C DC  9  D DG  2  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog46 hydrog ?    ? C DG  10 N1    ? ? ? 1_555 D DC  1  N3 ? ? C DG  10 D DC  1  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog47 hydrog ?    ? C DG  10 N2    ? ? ? 1_555 D DC  1  O2 ? ? C DG  10 D DC  1  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog48 hydrog ?    ? C DG  10 O6    ? ? ? 1_555 D DC  1  N4 ? ? C DG  10 D DC  1  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
hydrog ? ? 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1  1 "O4'" A DT 4  ? ? "C4'" A DT 4  ? ? 1.377 1.446 -0.069 0.010 N 
2  1 "O3'" A DG 10 ? ? "C3'" A DG 10 ? ? 1.373 1.419 -0.046 0.006 N 
3  1 N7    A DG 10 ? ? C8    A DG 10 ? ? 1.264 1.305 -0.041 0.006 N 
4  1 "C4'" B DC 1  ? ? "C3'" B DC 1  ? ? 1.449 1.521 -0.072 0.010 N 
5  1 N1    B DC 1  ? ? C2    B DC 1  ? ? 1.311 1.397 -0.086 0.010 N 
6  1 C2    B DC 1  ? ? N3    B DC 1  ? ? 1.300 1.353 -0.053 0.008 N 
7  1 "O4'" B DG 2  ? ? "C4'" B DG 2  ? ? 1.385 1.446 -0.061 0.010 N 
8  1 N1    B DG 2  ? ? C2    B DG 2  ? ? 1.318 1.373 -0.055 0.008 N 
9  1 N3    B DG 2  ? ? C4    B DG 2  ? ? 1.307 1.350 -0.043 0.007 N 
10 1 C4    B DG 2  ? ? C5    B DG 2  ? ? 1.334 1.379 -0.045 0.007 N 
11 1 C6    B DG 2  ? ? N1    B DG 2  ? ? 1.345 1.391 -0.046 0.007 N 
12 1 "C5'" B DA 3  ? ? "C4'" B DA 3  ? ? 1.426 1.509 -0.083 0.011 N 
13 1 C4    B DA 3  ? ? C5    B DA 3  ? ? 1.338 1.383 -0.045 0.007 N 
14 1 C6    B DA 3  ? ? N1    B DA 3  ? ? 1.286 1.351 -0.065 0.007 N 
15 1 N9    B DA 3  ? ? C4    B DA 3  ? ? 1.419 1.374 0.045  0.006 N 
16 1 C5    B DT 5  ? ? C6    B DT 5  ? ? 1.395 1.339 0.056  0.007 N 
17 1 C6    B DT 5  ? ? N1    B DT 5  ? ? 1.421 1.378 0.043  0.007 N 
18 1 C5    B DT 5  ? ? C7    B DT 5  ? ? 1.772 1.496 0.276  0.006 N 
19 1 C6    B DT 6  ? ? N1    B DT 6  ? ? 1.451 1.378 0.073  0.007 N 
20 1 C5    B DT 6  ? ? C7    B DT 6  ? ? 1.597 1.496 0.101  0.006 N 
21 1 "C2'" B DA 8  ? ? "C1'" B DA 8  ? ? 1.446 1.518 -0.072 0.010 N 
22 1 C4    B DA 8  ? ? C5    B DA 8  ? ? 1.340 1.383 -0.043 0.007 N 
23 1 C6    B DA 8  ? ? N1    B DA 8  ? ? 1.297 1.351 -0.054 0.007 N 
24 1 "O3'" C DG 1  ? ? "C3'" C DG 1  ? ? 1.383 1.419 -0.036 0.006 N 
25 1 "C4'" C DG 10 ? ? "C3'" C DG 10 ? ? 1.431 1.521 -0.090 0.010 N 
26 1 "C4'" D DG 2  ? ? "C3'" D DG 2  ? ? 1.451 1.521 -0.070 0.010 N 
27 1 "C2'" D DG 2  ? ? "C1'" D DG 2  ? ? 1.443 1.518 -0.075 0.010 N 
28 1 C5    D DT 5  ? ? C6    D DT 5  ? ? 1.398 1.339 0.059  0.007 N 
29 1 C6    D DT 5  ? ? N1    D DT 5  ? ? 1.421 1.378 0.043  0.007 N 
30 1 C5    D DT 5  ? ? C7    D DT 5  ? ? 1.770 1.496 0.274  0.006 N 
31 1 C4    D DT 6  ? ? C5    D DT 6  ? ? 1.508 1.445 0.063  0.009 N 
32 1 C6    D DT 6  ? ? N1    D DT 6  ? ? 1.443 1.378 0.065  0.007 N 
33 1 C5    D DT 6  ? ? C7    D DT 6  ? ? 1.597 1.496 0.101  0.006 N 
34 1 "C3'" D DA 8  ? ? "C2'" D DA 8  ? ? 1.464 1.516 -0.052 0.008 N 
35 1 C8    D DG 9  ? ? N9    D DG 9  ? ? 1.312 1.374 -0.062 0.007 N 
36 1 N1    D DC 10 ? ? C6    D DC 10 ? ? 1.310 1.367 -0.057 0.006 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 "O4'" A DG 1  ? ? "C1'" A DG 1  ? ? N9    A DG  1  ? ? 112.35 108.30 4.05   0.30 N 
2  1 N7    A DG 1  ? ? C8    A DG 1  ? ? N9    A DG  1  ? ? 116.44 113.10 3.34   0.50 N 
3  1 C8    A DG 1  ? ? N9    A DG 1  ? ? C4    A DG  1  ? ? 102.54 106.40 -3.86  0.40 N 
4  1 N9    A DG 1  ? ? C4    A DG 1  ? ? C5    A DG  1  ? ? 108.08 105.40 2.68   0.40 N 
5  1 "O4'" A DC 2  ? ? "C1'" A DC 2  ? ? N1    A DC  2  ? ? 111.29 108.30 2.99   0.30 N 
6  1 "O4'" A DT 4  ? ? "C1'" A DT 4  ? ? "C2'" A DT  4  ? ? 100.59 105.90 -5.31  0.80 N 
7  1 C4    A DT 4  ? ? C5    A DT 4  ? ? C7    A DT  4  ? ? 123.67 119.00 4.67   0.60 N 
8  1 C6    A DT 4  ? ? C5    A DT 4  ? ? C7    A DT  4  ? ? 115.53 122.90 -7.37  0.60 N 
9  1 "C1'" A DT 7  ? ? "O4'" A DT 7  ? ? "C4'" A DT  7  ? ? 102.81 110.10 -7.29  1.00 N 
10 1 "O4'" A DT 7  ? ? "C1'" A DT 7  ? ? N1    A DT  7  ? ? 102.34 108.00 -5.66  0.70 N 
11 1 C6    A DT 7  ? ? C5    A DT 7  ? ? C7    A DT  7  ? ? 119.09 122.90 -3.81  0.60 N 
12 1 N1    A DC 9  ? ? C2    A DC 9  ? ? O2    A DC  9  ? ? 123.60 118.90 4.70   0.60 N 
13 1 "C3'" A DC 9  ? ? "O3'" A DC 9  ? ? P     A DG  10 ? ? 132.68 119.70 12.98  1.20 Y 
14 1 "O3'" A DC 9  ? ? P     A DG 10 ? ? OP2   A DG  10 ? ? 118.04 110.50 7.54   1.10 Y 
15 1 "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? "C3'" A DG  10 ? ? 109.73 106.00 3.73   0.60 N 
16 1 C2    A DG 10 ? ? N3    A DG 10 ? ? C4    A DG  10 ? ? 116.12 111.90 4.22   0.50 N 
17 1 "O4'" B DC 1  ? ? "C1'" B DC 1  ? ? "C2'" B DC  1  ? ? 100.33 105.90 -5.57  0.80 N 
18 1 "O4'" B DC 1  ? ? "C1'" B DC 1  ? ? N1    B DC  1  ? ? 103.15 108.00 -4.85  0.70 N 
19 1 N1    B DC 1  ? ? C2    B DC 1  ? ? O2    B DC  1  ? ? 123.31 118.90 4.41   0.60 N 
20 1 N3    B DC 1  ? ? C2    B DC 1  ? ? O2    B DC  1  ? ? 115.24 121.90 -6.66  0.70 N 
21 1 "O4'" B DG 2  ? ? "C1'" B DG 2  ? ? "C2'" B DG  2  ? ? 100.35 105.90 -5.55  0.80 N 
22 1 C2    B DG 2  ? ? N3    B DG 2  ? ? C4    B DG  2  ? ? 115.32 111.90 3.42   0.50 N 
23 1 N3    B DG 2  ? ? C2    B DG 2  ? ? N2    B DG  2  ? ? 124.40 119.90 4.50   0.70 N 
24 1 "O4'" B DA 3  ? ? "C1'" B DA 3  ? ? N9    B DA  3  ? ? 115.26 108.30 6.96   0.30 N 
25 1 C5    B DA 3  ? ? N7    B DA 3  ? ? C8    B DA  3  ? ? 107.47 103.90 3.57   0.50 N 
26 1 N7    B DA 3  ? ? C8    B DA 3  ? ? N9    B DA  3  ? ? 110.24 113.80 -3.56  0.50 N 
27 1 "O4'" B DT 5  ? ? "C1'" B DT 5  ? ? N1    B DT  5  ? ? 98.53  108.00 -9.47  0.70 N 
28 1 C5    B DT 5  ? ? C6    B DT 5  ? ? N1    B DT  5  ? ? 118.41 123.70 -5.29  0.60 N 
29 1 C4    B DT 5  ? ? C5    B DT 5  ? ? C7    B DT  5  ? ? 93.65  119.00 -25.35 0.60 N 
30 1 "C1'" B DT 6  ? ? "O4'" B DT 6  ? ? "C4'" B DT  6  ? ? 99.60  110.10 -10.50 1.00 N 
31 1 "O4'" B DT 6  ? ? "C1'" B DT 6  ? ? N1    B DT  6  ? ? 121.30 108.30 13.00  0.30 N 
32 1 N3    B DT 6  ? ? C2    B DT 6  ? ? O2    B DT  6  ? ? 118.36 122.30 -3.94  0.60 N 
33 1 N3    B DT 6  ? ? C4    B DT 6  ? ? O4    B DT  6  ? ? 114.89 119.90 -5.01  0.60 N 
34 1 C5    B DT 6  ? ? C4    B DT 6  ? ? O4    B DT  6  ? ? 129.27 124.90 4.37   0.70 N 
35 1 C4    B DT 6  ? ? C5    B DT 6  ? ? C7    B DT  6  ? ? 107.65 119.00 -11.35 0.60 N 
36 1 "O4'" B DA 8  ? ? "C4'" B DA 8  ? ? "C3'" B DA  8  ? ? 100.91 104.50 -3.59  0.40 N 
37 1 "C1'" B DA 8  ? ? "O4'" B DA 8  ? ? "C4'" B DA  8  ? ? 100.53 110.10 -9.57  1.00 N 
38 1 "O4'" B DG 9  ? ? "C4'" B DG 9  ? ? "C3'" B DG  9  ? ? 101.91 104.50 -2.59  0.40 N 
39 1 "O4'" B DG 9  ? ? "C1'" B DG 9  ? ? "C2'" B DG  9  ? ? 97.76  105.90 -8.14  0.80 N 
40 1 "C3'" B DG 9  ? ? "O3'" B DG 9  ? ? P     B DC  10 ? ? 131.63 119.70 11.93  1.20 Y 
41 1 "O4'" C DG 1  ? ? "C1'" C DG 1  ? ? N9    C DG  1  ? ? 110.27 108.30 1.97   0.30 N 
42 1 C5    C DG 1  ? ? C6    C DG 1  ? ? N1    C DG  1  ? ? 114.86 111.50 3.36   0.50 N 
43 1 "C3'" C DG 1  ? ? "O3'" C DG 1  ? ? P     C DC  2  ? ? 131.84 119.70 12.14  1.20 Y 
44 1 "C1'" C DC 2  ? ? "O4'" C DC 2  ? ? "C4'" C DC  2  ? ? 103.94 110.10 -6.16  1.00 N 
45 1 "C4'" C DC 2  ? ? "C3'" C DC 2  ? ? "C2'" C DC  2  ? ? 94.91  102.20 -7.29  0.70 N 
46 1 "C3'" C DC 2  ? ? "O3'" C DC 2  ? ? P     C BRU 3  ? ? 128.07 119.70 8.37   1.20 Y 
47 1 "C1'" C DT 4  ? ? "O4'" C DT 4  ? ? "C4'" C DT  4  ? ? 102.46 110.10 -7.64  1.00 N 
48 1 "O4'" C DT 7  ? ? "C1'" C DT 7  ? ? N1    C DT  7  ? ? 112.90 108.30 4.60   0.30 N 
49 1 "C4'" C DG 10 ? ? "C3'" C DG 10 ? ? "C2'" C DG  10 ? ? 97.81  102.20 -4.39  0.70 N 
50 1 N3    C DG 10 ? ? C4    C DG 10 ? ? C5    C DG  10 ? ? 125.54 128.60 -3.06  0.50 N 
51 1 C4    C DG 10 ? ? C5    C DG 10 ? ? N7    C DG  10 ? ? 107.78 110.80 -3.02  0.40 N 
52 1 C8    C DG 10 ? ? N9    C DG 10 ? ? C4    C DG  10 ? ? 102.80 106.40 -3.60  0.40 N 
53 1 N9    C DG 10 ? ? C4    C DG 10 ? ? C5    C DG  10 ? ? 108.70 105.40 3.30   0.40 N 
54 1 C5    C DG 10 ? ? C6    C DG 10 ? ? O6    C DG  10 ? ? 132.43 128.60 3.83   0.60 N 
55 1 "O4'" D DA 3  ? ? "C1'" D DA 3  ? ? N9    D DA  3  ? ? 113.41 108.30 5.11   0.30 N 
56 1 "O4'" D DT 5  ? ? "C1'" D DT 5  ? ? N1    D DT  5  ? ? 100.24 108.00 -7.76  0.70 N 
57 1 C5    D DT 5  ? ? C6    D DT 5  ? ? N1    D DT  5  ? ? 119.15 123.70 -4.55  0.60 N 
58 1 C4    D DT 5  ? ? C5    D DT 5  ? ? C7    D DT  5  ? ? 93.57  119.00 -25.43 0.60 N 
59 1 "C1'" D DT 6  ? ? "O4'" D DT 6  ? ? "C4'" D DT  6  ? ? 98.75  110.10 -11.35 1.00 N 
60 1 "O4'" D DT 6  ? ? "C1'" D DT 6  ? ? N1    D DT  6  ? ? 121.35 108.30 13.05  0.30 N 
61 1 N3    D DT 6  ? ? C2    D DT 6  ? ? O2    D DT  6  ? ? 118.31 122.30 -3.99  0.60 N 
62 1 N3    D DT 6  ? ? C4    D DT 6  ? ? O4    D DT  6  ? ? 115.32 119.90 -4.58  0.60 N 
63 1 C4    D DT 6  ? ? C5    D DT 6  ? ? C7    D DT  6  ? ? 107.80 119.00 -11.20 0.60 N 
64 1 "C3'" D DA 8  ? ? "C2'" D DA 8  ? ? "C1'" D DA  8  ? ? 95.89  102.40 -6.51  0.80 N 
65 1 "O4'" D DA 8  ? ? "C1'" D DA 8  ? ? "C2'" D DA  8  ? ? 110.73 106.80 3.93   0.50 N 
66 1 "C3'" D DA 8  ? ? "O3'" D DA 8  ? ? P     D DG  9  ? ? 127.89 119.70 8.19   1.20 Y 
67 1 N1    D DG 9  ? ? C6    D DG 9  ? ? O6    D DG  9  ? ? 114.13 119.90 -5.77  0.60 N 
68 1 C5    D DG 9  ? ? C6    D DG 9  ? ? O6    D DG  9  ? ? 132.64 128.60 4.04   0.60 N 
69 1 "C1'" D DC 10 ? ? "O4'" D DC 10 ? ? "C4'" D DC  10 ? ? 102.65 110.10 -7.45  1.00 N 
70 1 "O4'" D DC 10 ? ? "C1'" D DC 10 ? ? N1    D DC  10 ? ? 110.49 108.30 2.19   0.30 N 
71 1 N1    D DC 10 ? ? C2    D DC 10 ? ? O2    D DC  10 ? ? 122.57 118.90 3.67   0.60 N 
# 
loop_
_pdbx_validate_planes.id 
_pdbx_validate_planes.PDB_model_num 
_pdbx_validate_planes.auth_comp_id 
_pdbx_validate_planes.auth_asym_id 
_pdbx_validate_planes.auth_seq_id 
_pdbx_validate_planes.PDB_ins_code 
_pdbx_validate_planes.label_alt_id 
_pdbx_validate_planes.rmsd 
_pdbx_validate_planes.type 
1 1 DC C 2  ? ? 0.098 'SIDE CHAIN' 
2 1 DG C 10 ? ? 0.061 'SIDE CHAIN' 
3 1 DG D 2  ? ? 0.095 'SIDE CHAIN' 
# 
loop_
_pdbx_struct_mod_residue.id 
_pdbx_struct_mod_residue.label_asym_id 
_pdbx_struct_mod_residue.label_comp_id 
_pdbx_struct_mod_residue.label_seq_id 
_pdbx_struct_mod_residue.auth_asym_id 
_pdbx_struct_mod_residue.auth_comp_id 
_pdbx_struct_mod_residue.auth_seq_id 
_pdbx_struct_mod_residue.PDB_ins_code 
_pdbx_struct_mod_residue.parent_comp_id 
_pdbx_struct_mod_residue.details 
1 A BRU 3 A BRU 3 ? DU ? 
2 A BRU 8 A BRU 8 ? DU ? 
3 C BRU 3 C BRU 3 ? DU ? 
4 C BRU 8 C BRU 8 ? DU ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
BRU N1     N  N N 1   
BRU C2     C  N N 2   
BRU N3     N  N N 3   
BRU C4     C  N N 4   
BRU C5     C  N N 5   
BRU C6     C  N N 6   
BRU O2     O  N N 7   
BRU O4     O  N N 8   
BRU BR     BR N N 9   
BRU "C1'"  C  N R 10  
BRU "C2'"  C  N N 11  
BRU "C3'"  C  N S 12  
BRU "C4'"  C  N R 13  
BRU "O3'"  O  N N 14  
BRU "O4'"  O  N N 15  
BRU "C5'"  C  N N 16  
BRU "O5'"  O  N N 17  
BRU P      P  N N 18  
BRU OP1    O  N N 19  
BRU OP2    O  N N 20  
BRU OP3    O  N N 21  
BRU HN3    H  N N 22  
BRU H6     H  N N 23  
BRU "H1'"  H  N N 24  
BRU "H2'"  H  N N 25  
BRU "H2''" H  N N 26  
BRU "H3'"  H  N N 27  
BRU "H4'"  H  N N 28  
BRU "HO3'" H  N N 29  
BRU "H5'"  H  N N 30  
BRU "H5''" H  N N 31  
BRU HOP2   H  N N 32  
BRU HOP3   H  N N 33  
DA  OP3    O  N N 34  
DA  P      P  N N 35  
DA  OP1    O  N N 36  
DA  OP2    O  N N 37  
DA  "O5'"  O  N N 38  
DA  "C5'"  C  N N 39  
DA  "C4'"  C  N R 40  
DA  "O4'"  O  N N 41  
DA  "C3'"  C  N S 42  
DA  "O3'"  O  N N 43  
DA  "C2'"  C  N N 44  
DA  "C1'"  C  N R 45  
DA  N9     N  Y N 46  
DA  C8     C  Y N 47  
DA  N7     N  Y N 48  
DA  C5     C  Y N 49  
DA  C6     C  Y N 50  
DA  N6     N  N N 51  
DA  N1     N  Y N 52  
DA  C2     C  Y N 53  
DA  N3     N  Y N 54  
DA  C4     C  Y N 55  
DA  HOP3   H  N N 56  
DA  HOP2   H  N N 57  
DA  "H5'"  H  N N 58  
DA  "H5''" H  N N 59  
DA  "H4'"  H  N N 60  
DA  "H3'"  H  N N 61  
DA  "HO3'" H  N N 62  
DA  "H2'"  H  N N 63  
DA  "H2''" H  N N 64  
DA  "H1'"  H  N N 65  
DA  H8     H  N N 66  
DA  H61    H  N N 67  
DA  H62    H  N N 68  
DA  H2     H  N N 69  
DC  OP3    O  N N 70  
DC  P      P  N N 71  
DC  OP1    O  N N 72  
DC  OP2    O  N N 73  
DC  "O5'"  O  N N 74  
DC  "C5'"  C  N N 75  
DC  "C4'"  C  N R 76  
DC  "O4'"  O  N N 77  
DC  "C3'"  C  N S 78  
DC  "O3'"  O  N N 79  
DC  "C2'"  C  N N 80  
DC  "C1'"  C  N R 81  
DC  N1     N  N N 82  
DC  C2     C  N N 83  
DC  O2     O  N N 84  
DC  N3     N  N N 85  
DC  C4     C  N N 86  
DC  N4     N  N N 87  
DC  C5     C  N N 88  
DC  C6     C  N N 89  
DC  HOP3   H  N N 90  
DC  HOP2   H  N N 91  
DC  "H5'"  H  N N 92  
DC  "H5''" H  N N 93  
DC  "H4'"  H  N N 94  
DC  "H3'"  H  N N 95  
DC  "HO3'" H  N N 96  
DC  "H2'"  H  N N 97  
DC  "H2''" H  N N 98  
DC  "H1'"  H  N N 99  
DC  H41    H  N N 100 
DC  H42    H  N N 101 
DC  H5     H  N N 102 
DC  H6     H  N N 103 
DG  OP3    O  N N 104 
DG  P      P  N N 105 
DG  OP1    O  N N 106 
DG  OP2    O  N N 107 
DG  "O5'"  O  N N 108 
DG  "C5'"  C  N N 109 
DG  "C4'"  C  N R 110 
DG  "O4'"  O  N N 111 
DG  "C3'"  C  N S 112 
DG  "O3'"  O  N N 113 
DG  "C2'"  C  N N 114 
DG  "C1'"  C  N R 115 
DG  N9     N  Y N 116 
DG  C8     C  Y N 117 
DG  N7     N  Y N 118 
DG  C5     C  Y N 119 
DG  C6     C  N N 120 
DG  O6     O  N N 121 
DG  N1     N  N N 122 
DG  C2     C  N N 123 
DG  N2     N  N N 124 
DG  N3     N  N N 125 
DG  C4     C  Y N 126 
DG  HOP3   H  N N 127 
DG  HOP2   H  N N 128 
DG  "H5'"  H  N N 129 
DG  "H5''" H  N N 130 
DG  "H4'"  H  N N 131 
DG  "H3'"  H  N N 132 
DG  "HO3'" H  N N 133 
DG  "H2'"  H  N N 134 
DG  "H2''" H  N N 135 
DG  "H1'"  H  N N 136 
DG  H8     H  N N 137 
DG  H1     H  N N 138 
DG  H21    H  N N 139 
DG  H22    H  N N 140 
DT  OP3    O  N N 141 
DT  P      P  N N 142 
DT  OP1    O  N N 143 
DT  OP2    O  N N 144 
DT  "O5'"  O  N N 145 
DT  "C5'"  C  N N 146 
DT  "C4'"  C  N R 147 
DT  "O4'"  O  N N 148 
DT  "C3'"  C  N S 149 
DT  "O3'"  O  N N 150 
DT  "C2'"  C  N N 151 
DT  "C1'"  C  N R 152 
DT  N1     N  N N 153 
DT  C2     C  N N 154 
DT  O2     O  N N 155 
DT  N3     N  N N 156 
DT  C4     C  N N 157 
DT  O4     O  N N 158 
DT  C5     C  N N 159 
DT  C7     C  N N 160 
DT  C6     C  N N 161 
DT  HOP3   H  N N 162 
DT  HOP2   H  N N 163 
DT  "H5'"  H  N N 164 
DT  "H5''" H  N N 165 
DT  "H4'"  H  N N 166 
DT  "H3'"  H  N N 167 
DT  "HO3'" H  N N 168 
DT  "H2'"  H  N N 169 
DT  "H2''" H  N N 170 
DT  "H1'"  H  N N 171 
DT  H3     H  N N 172 
DT  H71    H  N N 173 
DT  H72    H  N N 174 
DT  H73    H  N N 175 
DT  H6     H  N N 176 
HOH O      O  N N 177 
HOH H1     H  N N 178 
HOH H2     H  N N 179 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
BRU N1    C2     sing N N 1   
BRU N1    C6     sing N N 2   
BRU N1    "C1'"  sing N N 3   
BRU C2    N3     sing N N 4   
BRU C2    O2     doub N N 5   
BRU N3    C4     sing N N 6   
BRU N3    HN3    sing N N 7   
BRU C4    C5     sing N N 8   
BRU C4    O4     doub N N 9   
BRU C5    C6     doub N N 10  
BRU C5    BR     sing N N 11  
BRU C6    H6     sing N N 12  
BRU "C1'" "C2'"  sing N N 13  
BRU "C1'" "O4'"  sing N N 14  
BRU "C1'" "H1'"  sing N N 15  
BRU "C2'" "C3'"  sing N N 16  
BRU "C2'" "H2'"  sing N N 17  
BRU "C2'" "H2''" sing N N 18  
BRU "C3'" "C4'"  sing N N 19  
BRU "C3'" "O3'"  sing N N 20  
BRU "C3'" "H3'"  sing N N 21  
BRU "C4'" "O4'"  sing N N 22  
BRU "C4'" "C5'"  sing N N 23  
BRU "C4'" "H4'"  sing N N 24  
BRU "O3'" "HO3'" sing N N 25  
BRU "C5'" "O5'"  sing N N 26  
BRU "C5'" "H5'"  sing N N 27  
BRU "C5'" "H5''" sing N N 28  
BRU "O5'" P      sing N N 29  
BRU P     OP1    doub N N 30  
BRU P     OP2    sing N N 31  
BRU P     OP3    sing N N 32  
BRU OP2   HOP2   sing N N 33  
BRU OP3   HOP3   sing N N 34  
DA  OP3   P      sing N N 35  
DA  OP3   HOP3   sing N N 36  
DA  P     OP1    doub N N 37  
DA  P     OP2    sing N N 38  
DA  P     "O5'"  sing N N 39  
DA  OP2   HOP2   sing N N 40  
DA  "O5'" "C5'"  sing N N 41  
DA  "C5'" "C4'"  sing N N 42  
DA  "C5'" "H5'"  sing N N 43  
DA  "C5'" "H5''" sing N N 44  
DA  "C4'" "O4'"  sing N N 45  
DA  "C4'" "C3'"  sing N N 46  
DA  "C4'" "H4'"  sing N N 47  
DA  "O4'" "C1'"  sing N N 48  
DA  "C3'" "O3'"  sing N N 49  
DA  "C3'" "C2'"  sing N N 50  
DA  "C3'" "H3'"  sing N N 51  
DA  "O3'" "HO3'" sing N N 52  
DA  "C2'" "C1'"  sing N N 53  
DA  "C2'" "H2'"  sing N N 54  
DA  "C2'" "H2''" sing N N 55  
DA  "C1'" N9     sing N N 56  
DA  "C1'" "H1'"  sing N N 57  
DA  N9    C8     sing Y N 58  
DA  N9    C4     sing Y N 59  
DA  C8    N7     doub Y N 60  
DA  C8    H8     sing N N 61  
DA  N7    C5     sing Y N 62  
DA  C5    C6     sing Y N 63  
DA  C5    C4     doub Y N 64  
DA  C6    N6     sing N N 65  
DA  C6    N1     doub Y N 66  
DA  N6    H61    sing N N 67  
DA  N6    H62    sing N N 68  
DA  N1    C2     sing Y N 69  
DA  C2    N3     doub Y N 70  
DA  C2    H2     sing N N 71  
DA  N3    C4     sing Y N 72  
DC  OP3   P      sing N N 73  
DC  OP3   HOP3   sing N N 74  
DC  P     OP1    doub N N 75  
DC  P     OP2    sing N N 76  
DC  P     "O5'"  sing N N 77  
DC  OP2   HOP2   sing N N 78  
DC  "O5'" "C5'"  sing N N 79  
DC  "C5'" "C4'"  sing N N 80  
DC  "C5'" "H5'"  sing N N 81  
DC  "C5'" "H5''" sing N N 82  
DC  "C4'" "O4'"  sing N N 83  
DC  "C4'" "C3'"  sing N N 84  
DC  "C4'" "H4'"  sing N N 85  
DC  "O4'" "C1'"  sing N N 86  
DC  "C3'" "O3'"  sing N N 87  
DC  "C3'" "C2'"  sing N N 88  
DC  "C3'" "H3'"  sing N N 89  
DC  "O3'" "HO3'" sing N N 90  
DC  "C2'" "C1'"  sing N N 91  
DC  "C2'" "H2'"  sing N N 92  
DC  "C2'" "H2''" sing N N 93  
DC  "C1'" N1     sing N N 94  
DC  "C1'" "H1'"  sing N N 95  
DC  N1    C2     sing N N 96  
DC  N1    C6     sing N N 97  
DC  C2    O2     doub N N 98  
DC  C2    N3     sing N N 99  
DC  N3    C4     doub N N 100 
DC  C4    N4     sing N N 101 
DC  C4    C5     sing N N 102 
DC  N4    H41    sing N N 103 
DC  N4    H42    sing N N 104 
DC  C5    C6     doub N N 105 
DC  C5    H5     sing N N 106 
DC  C6    H6     sing N N 107 
DG  OP3   P      sing N N 108 
DG  OP3   HOP3   sing N N 109 
DG  P     OP1    doub N N 110 
DG  P     OP2    sing N N 111 
DG  P     "O5'"  sing N N 112 
DG  OP2   HOP2   sing N N 113 
DG  "O5'" "C5'"  sing N N 114 
DG  "C5'" "C4'"  sing N N 115 
DG  "C5'" "H5'"  sing N N 116 
DG  "C5'" "H5''" sing N N 117 
DG  "C4'" "O4'"  sing N N 118 
DG  "C4'" "C3'"  sing N N 119 
DG  "C4'" "H4'"  sing N N 120 
DG  "O4'" "C1'"  sing N N 121 
DG  "C3'" "O3'"  sing N N 122 
DG  "C3'" "C2'"  sing N N 123 
DG  "C3'" "H3'"  sing N N 124 
DG  "O3'" "HO3'" sing N N 125 
DG  "C2'" "C1'"  sing N N 126 
DG  "C2'" "H2'"  sing N N 127 
DG  "C2'" "H2''" sing N N 128 
DG  "C1'" N9     sing N N 129 
DG  "C1'" "H1'"  sing N N 130 
DG  N9    C8     sing Y N 131 
DG  N9    C4     sing Y N 132 
DG  C8    N7     doub Y N 133 
DG  C8    H8     sing N N 134 
DG  N7    C5     sing Y N 135 
DG  C5    C6     sing N N 136 
DG  C5    C4     doub Y N 137 
DG  C6    O6     doub N N 138 
DG  C6    N1     sing N N 139 
DG  N1    C2     sing N N 140 
DG  N1    H1     sing N N 141 
DG  C2    N2     sing N N 142 
DG  C2    N3     doub N N 143 
DG  N2    H21    sing N N 144 
DG  N2    H22    sing N N 145 
DG  N3    C4     sing N N 146 
DT  OP3   P      sing N N 147 
DT  OP3   HOP3   sing N N 148 
DT  P     OP1    doub N N 149 
DT  P     OP2    sing N N 150 
DT  P     "O5'"  sing N N 151 
DT  OP2   HOP2   sing N N 152 
DT  "O5'" "C5'"  sing N N 153 
DT  "C5'" "C4'"  sing N N 154 
DT  "C5'" "H5'"  sing N N 155 
DT  "C5'" "H5''" sing N N 156 
DT  "C4'" "O4'"  sing N N 157 
DT  "C4'" "C3'"  sing N N 158 
DT  "C4'" "H4'"  sing N N 159 
DT  "O4'" "C1'"  sing N N 160 
DT  "C3'" "O3'"  sing N N 161 
DT  "C3'" "C2'"  sing N N 162 
DT  "C3'" "H3'"  sing N N 163 
DT  "O3'" "HO3'" sing N N 164 
DT  "C2'" "C1'"  sing N N 165 
DT  "C2'" "H2'"  sing N N 166 
DT  "C2'" "H2''" sing N N 167 
DT  "C1'" N1     sing N N 168 
DT  "C1'" "H1'"  sing N N 169 
DT  N1    C2     sing N N 170 
DT  N1    C6     sing N N 171 
DT  C2    O2     doub N N 172 
DT  C2    N3     sing N N 173 
DT  N3    C4     sing N N 174 
DT  N3    H3     sing N N 175 
DT  C4    O4     doub N N 176 
DT  C4    C5     sing N N 177 
DT  C5    C7     sing N N 178 
DT  C5    C6     doub N N 179 
DT  C7    H71    sing N N 180 
DT  C7    H72    sing N N 181 
DT  C7    H73    sing N N 182 
DT  C6    H6     sing N N 183 
HOH O     H1     sing N N 184 
HOH O     H2     sing N N 185 
# 
_ndb_struct_conf_na.entry_id   1SM5 
_ndb_struct_conf_na.feature    'b-form double helix' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DG  1  1_555 B DC 10 1_555 -0.108 -0.174 -0.125 -0.092  -13.479 -0.133 1  A_DG1:DC10_B A 1  ? B 10 ? 19 1 
1 A DC  2  1_555 B DG 9  1_555 0.730  -0.392 0.540  -8.862  -12.893 1.565  2  A_DC2:DG9_B  A 2  ? B 9  ? 19 1 
1 A BRU 3  1_555 B DA 8  1_555 -0.235 -0.263 0.306  -4.585  -17.586 -2.663 3  A_BRU3:DA8_B A 3  ? B 8  ? 20 1 
1 A DT  4  1_555 B DA 7  1_555 0.569  -0.262 -0.296 12.096  -14.438 3.169  4  A_DT4:DA7_B  A 4  ? B 7  ? 20 1 
1 A DA  5  1_555 B DT 6  1_555 0.192  -0.141 0.773  21.707  8.069   -0.812 5  A_DA5:DT6_B  A 5  ? B 6  ? 20 1 
1 A DA  6  1_555 B DT 5  1_555 -0.283 -0.134 -1.696 -25.878 -23.605 4.352  6  A_DA6:DT5_B  A 6  ? B 5  ? 20 1 
1 A DT  7  1_555 B DA 4  1_555 -0.169 -0.163 -0.278 10.974  -11.711 5.969  7  A_DT7:DA4_B  A 7  ? B 4  ? 20 1 
1 A BRU 8  1_555 B DA 3  1_555 -0.279 -0.088 -0.073 5.171   -15.095 3.182  8  A_BRU8:DA3_B A 8  ? B 3  ? 20 1 
1 A DC  9  1_555 B DG 2  1_555 0.224  -0.184 -0.584 13.994  -14.781 -0.349 9  A_DC9:DG2_B  A 9  ? B 2  ? 19 1 
1 A DG  10 1_555 B DC 1  1_555 -0.115 -0.011 0.251  14.198  -6.210  -2.281 10 A_DG10:DC1_B A 10 ? B 1  ? 19 1 
1 C DG  1  1_555 D DC 10 1_555 -0.086 0.086  -0.222 -2.145  -6.088  -0.559 11 C_DG1:DC10_D C 1  ? D 10 ? 19 1 
1 C DC  2  1_555 D DG 9  1_555 0.511  -0.253 0.547  -16.789 -17.407 -2.097 12 C_DC2:DG9_D  C 2  ? D 9  ? 19 1 
1 C BRU 3  1_555 D DA 8  1_555 -0.244 -0.028 -0.059 -4.997  -12.908 5.030  13 C_BRU3:DA8_D C 3  ? D 8  ? 20 1 
1 C DT  4  1_555 D DA 7  1_555 -0.154 -0.185 0.038  -3.021  -10.596 2.137  14 C_DT4:DA7_D  C 4  ? D 7  ? 20 1 
1 C DA  5  1_555 D DT 6  1_555 0.140  -0.097 0.790  18.527  -0.918  -2.948 15 C_DA5:DT6_D  C 5  ? D 6  ? 20 1 
1 C DA  6  1_555 D DT 5  1_555 0.450  -0.030 -1.697 -31.290 -28.914 5.333  16 C_DA6:DT5_D  C 6  ? D 5  ? 20 1 
1 C DT  7  1_555 D DA 4  1_555 -0.568 -0.086 0.077  0.330   -18.596 1.523  17 C_DT7:DA4_D  C 7  ? D 4  ? 20 1 
1 C BRU 8  1_555 D DA 3  1_555 -0.201 -0.029 -0.190 1.332   -15.264 -0.320 18 C_BRU8:DA3_D C 8  ? D 3  ? 20 1 
1 C DC  9  1_555 D DG 2  1_555 -0.089 -0.031 -0.052 7.807   -15.935 -1.753 19 C_DC9:DG2_D  C 9  ? D 2  ? 19 1 
1 C DG  10 1_555 D DC 1  1_555 -0.107 -0.222 -0.434 4.072   9.797   -1.301 20 C_DG10:DC1_D C 10 ? D 1  ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DG  1 1_555 B DC 10 1_555 A DC  2  1_555 B DG 9 1_555 -0.362 -0.322 3.528 -6.473  -1.585 41.360 -0.271 -0.230 3.552 -2.226 
9.094   41.871 1  AA_DG1DC2:DG9DC10_BB A 1 ? B 10 ? A 2  ? B 9 ? 
1 A DC  2 1_555 B DG 9  1_555 A BRU 3  1_555 B DA 8 1_555 -0.475 -0.502 3.005 1.184   4.014  29.507 -1.735 1.147  2.892 7.832  
-2.310  29.796 2  AA_DC2BRU3:DA8DG9_BB A 2 ? B 9  ? A 3  ? B 8 ? 
1 A BRU 3 1_555 B DA 8  1_555 A DT  4  1_555 B DA 7 1_555 0.222  -0.206 2.857 2.936   -0.852 35.631 -0.228 0.010  2.869 -1.389 
-4.788  35.758 3  AA_BRU3DT4:DA7DA8_BB A 3 ? B 8  ? A 4  ? B 7 ? 
1 A DT  4 1_555 B DA 7  1_555 A DA  5  1_555 B DT 6 1_555 1.424  0.064  3.123 -6.904  2.744  36.838 -0.228 -3.038 2.818 4.288  
10.790  37.555 4  AA_DT4DA5:DT6DA7_BB  A 4 ? B 7  ? A 5  ? B 6 ? 
1 A DA  5 1_555 B DT 6  1_555 A DA  6  1_555 B DT 5 1_555 -1.718 0.028  4.362 24.313  21.915 23.339 -2.898 5.772  1.564 37.121 
-41.182 40.014 5  AA_DA5DA6:DT5DT6_BB  A 5 ? B 6  ? A 6  ? B 5 ? 
1 A DA  6 1_555 B DT 5  1_555 A DT  7  1_555 B DA 4 1_555 0.095  0.101  2.442 -17.039 3.897  28.686 -0.303 -2.258 2.063 7.094  
31.020  33.496 6  AA_DA6DT7:DA4DT5_BB  A 6 ? B 5  ? A 7  ? B 4 ? 
1 A DT  7 1_555 B DA 4  1_555 A BRU 8  1_555 B DA 3 1_555 0.162  -0.359 3.425 2.245   4.583  31.434 -1.525 0.132  3.344 8.390  
-4.111  31.836 7  AA_DT7BRU8:DA3DA4_BB A 7 ? B 4  ? A 8  ? B 3 ? 
1 A BRU 8 1_555 B DA 3  1_555 A DC  9  1_555 B DG 2 1_555 -0.151 1.017  2.999 5.713   4.099  42.598 1.009  0.727  3.036 5.597  
-7.800  43.148 8  AA_BRU8DC9:DG2DA3_BB A 8 ? B 3  ? A 9  ? B 2 ? 
1 A DC  9 1_555 B DG 2  1_555 A DG  10 1_555 B DC 1 1_555 -0.226 0.456  3.387 -6.134  5.592  34.917 -0.103 -0.559 3.407 9.159  
10.048  35.860 9  AA_DC9DG10:DC1DG2_BB A 9 ? B 2  ? A 10 ? B 1 ? 
1 C DG  1 1_555 D DC 10 1_555 C DC  2  1_555 D DG 9 1_555 -0.757 -0.508 3.570 -6.738  -0.147 36.170 -0.784 0.179  3.649 -0.234 
10.737  36.772 10 CC_DG1DC2:DG9DC10_DD C 1 ? D 10 ? C 2  ? D 9 ? 
1 C DC  2 1_555 D DG 9  1_555 C BRU 3  1_555 D DA 8 1_555 -0.474 -0.334 2.905 4.507   4.884  25.290 -1.890 2.111  2.671 10.916 
-10.075 26.134 11 CC_DC2BRU3:DA8DG9_DD C 2 ? D 9  ? C 3  ? D 8 ? 
1 C BRU 3 1_555 D DA 8  1_555 C DT  4  1_555 D DA 7 1_555 0.342  -0.011 3.409 -0.817  5.731  33.996 -0.945 -0.709 3.354 9.714  
1.385   34.471 12 CC_BRU3DT4:DA7DA8_DD C 3 ? D 8  ? C 4  ? D 7 ? 
1 C DT  4 1_555 D DA 7  1_555 C DA  5  1_555 D DT 6 1_555 1.142  0.119  2.786 -2.192  -3.246 42.327 0.441  -1.762 2.711 -4.484 
3.028   42.500 13 CC_DT4DA5:DT6DA7_DD  C 4 ? D 7  ? C 5  ? D 6 ? 
1 C DA  5 1_555 D DT 6  1_555 C DA  6  1_555 D DT 5 1_555 -1.171 -0.109 4.414 24.936  22.815 25.804 -3.060 4.803  1.996 36.240 
-39.610 42.293 14 CC_DA5DA6:DT5DT6_DD  C 5 ? D 6  ? C 6  ? D 5 ? 
1 C DA  6 1_555 D DT 5  1_555 C DT  7  1_555 D DA 4 1_555 -0.068 -0.081 2.573 -20.413 -0.812 24.610 -0.028 -2.858 2.041 -1.598 
40.183  31.883 15 CC_DA6DT7:DA4DT5_DD  C 6 ? D 5  ? C 7  ? D 4 ? 
1 C DT  7 1_555 D DA 4  1_555 C BRU 8  1_555 D DA 3 1_555 -0.064 -0.272 3.319 4.246   4.018  35.485 -1.020 0.716  3.241 6.537  
-6.908  35.948 16 CC_DT7BRU8:DA3DA4_DD C 7 ? D 4  ? C 8  ? D 3 ? 
1 C BRU 8 1_555 D DA 3  1_555 C DC  9  1_555 D DG 2 1_555 0.517  0.464  3.220 1.627   7.828  32.330 -0.504 -0.629 3.261 13.796 
-2.867  33.278 17 CC_BRU8DC9:DG2DA3_DD C 8 ? D 3  ? C 9  ? D 2 ? 
1 C DC  9 1_555 D DG 2  1_555 C DG  10 1_555 D DC 1 1_555 -0.188 0.687  3.669 0.484   -6.372 45.918 1.472  0.284  3.547 -8.121 
-0.617  46.336 18 CC_DC9DG10:DC1DG2_DD C 9 ? D 2  ? C 10 ? D 1 ? 
# 
_atom_sites.entry_id                    1SM5 
_atom_sites.fract_transf_matrix[1][1]   0.040816 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.018570 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.013275 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
BR 
C  
N  
O  
P  
# 
loop_