HEADER ISOMERASE 11-MAR-04 1SNN TITLE 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE FROM METHANOCOCCUS TITLE 2 JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DHBP SYNTHASE; COMPND 5 EC: 5.4.99.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: MJ0055; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XL1; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNCO-MJ KEYWDS RIBOFLAVIN BIOSYNTHESIS, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.STEINBACHER,S.SCHIFFMANN,R.HUBER,A.BACHER,M.FISCHER REVDAT 4 25-OCT-23 1SNN 1 REMARK REVDAT 3 10-NOV-21 1SNN 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1SNN 1 VERSN REVDAT 1 20-JUL-04 1SNN 0 JRNL AUTH S.STEINBACHER,S.SCHIFFMANN,A.BACHER,M.FISCHER JRNL TITL METAL SITES IN 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE JRNL TITL 2 FROM METHANOCOCCUS JANNASCHII IN COMPLEX WITH THE SUBSTRATE JRNL TITL 3 RIBULOSE 5-PHOSPHATE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 60 1338 2004 JRNL REFN ISSN 0907-4449 JRNL PMID 15213409 JRNL DOI 10.1107/S0907444904009862 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.STEINBACHER,S.SCHIFFMANN,G.RICHTER,R.HUBER,A.BACHER, REMARK 1 AUTH 2 M.FISCHER REMARK 1 TITL STRUCTURE OF 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE REMARK 1 TITL 2 FROM METHANOCOCCUS JANNASCHII IN COMPLEX WITH DIVALENT METAL REMARK 1 TITL 3 IONS AND THE SUBSTRATE RIBULOSE 5-PHOSPHATE: IMPLICATIONS REMARK 1 TITL 4 FOR THE CATALYTIC MECHANISM REMARK 1 REF J.BIOL.CHEM. V. 278 42256 2003 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 12904291 REMARK 1 DOI 10.1074/JBC.M307301200 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.3 REMARK 3 NUMBER OF REFLECTIONS : 53820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2723 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3470 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 352 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.70800 REMARK 3 B22 (A**2) : 4.76200 REMARK 3 B33 (A**2) : -8.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.21800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.480 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE PURPOSE OF THE PRESENT STUDY WAS TO UNUMBIGUOUSLY IDENTIFY A REMARK 3 METAL ION AS ZINC. REMARK 3 THEREFORE A DATA SET INCLUDING THE ANOMLAOUS DATA WAS COLLECTED AT REMARK 3 THE ZINC ABSORPTION EDGE. REMARK 3 THE STRUCTURE IS VIRTUALLY IDENTICAL TO THE ENTRY 1PVY. THEREFORE, REMARK 3 A SIMPLE REFINEMENT WAS REMARK 3 SUFFICIENT TO "SOLVE" THE STRUCTURE. THE STRCUTURE WAS REFINED REMARK 3 AGAINST THE REMARK 3 DATA SET, NOT CONTAINING THE ANOMALOUS DATA. REMARK 4 REMARK 4 1SNN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAR-04. REMARK 100 THE DEPOSITION ID IS D_1000021856. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.283, 1.2823 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53846 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 0.9 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.26700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1PVY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG1000, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.68300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS IDENTICAL TO THE ASSYMMETRIC DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -170.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 221 REMARK 465 ASP A 222 REMARK 465 LYS A 223 REMARK 465 TYR A 224 REMARK 465 LEU A 225 REMARK 465 LYS A 226 REMARK 465 ASP A 227 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ASP B 222 REMARK 465 LYS B 223 REMARK 465 TYR B 224 REMARK 465 LEU B 225 REMARK 465 LYS B 226 REMARK 465 ASP B 227 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 2 CG OD1 ND2 REMARK 480 LYS A 65 CD CE NZ REMARK 480 LYS A 83 CD CE NZ REMARK 480 ARG A 86 CD NE CZ NH1 NH2 REMARK 480 ASN A 136 CB CG OD1 ND2 REMARK 480 GLU A 215 CB CG CD OE1 OE2 REMARK 480 LYS B 196 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 662 O HOH B 616 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 94 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 22 148.32 -173.07 REMARK 500 ARG A 25 -127.30 -123.48 REMARK 500 ALA A 50 -70.91 -110.55 REMARK 500 PRO A 90 40.98 -78.54 REMARK 500 ASN A 91 9.64 -67.28 REMARK 500 SER A 102 -154.25 -127.03 REMARK 500 PHE A 111 -85.39 -92.07 REMARK 500 LEU A 157 -133.97 49.47 REMARK 500 GLN A 162 52.43 -114.17 REMARK 500 ARG B 25 -113.90 -102.40 REMARK 500 ALA B 50 -70.45 -106.43 REMARK 500 SER B 102 -148.30 -118.57 REMARK 500 PHE B 111 -85.62 -95.60 REMARK 500 ARG B 134 54.41 -91.72 REMARK 500 LEU B 157 -128.85 43.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 26 OE1 REMARK 620 2 HIS A 164 ND1 101.0 REMARK 620 3 5RP A 401 O10 99.8 91.5 REMARK 620 4 5RP A 401 O13 93.1 162.9 95.5 REMARK 620 5 5RP A 401 O14 161.9 90.2 93.9 73.8 REMARK 620 6 HOH A 751 O 79.1 88.1 178.8 85.2 87.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 26 OE2 REMARK 620 2 TYR A 95 OH 88.7 REMARK 620 3 5RP A 401 O11 84.4 97.7 REMARK 620 4 5RP A 401 O8 106.9 147.5 57.2 REMARK 620 5 5RP A 401 O13 71.0 150.3 101.5 61.7 REMARK 620 6 5RP A 401 O4 129.1 120.4 125.9 71.5 64.0 REMARK 620 7 HOH A 668 O 158.2 77.3 81.1 78.5 127.9 72.7 REMARK 620 8 HOH A 750 O 79.0 70.1 159.4 139.9 84.5 74.5 110.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 96 OD2 REMARK 620 2 GLU A 97 OE1 73.3 REMARK 620 3 HOH A 654 O 144.0 139.2 REMARK 620 4 HOH A 671 O 93.4 84.3 79.1 REMARK 620 5 HOH A 676 O 78.1 88.6 110.7 170.1 REMARK 620 6 HOH A 706 O 71.2 144.4 74.4 94.7 87.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 204 O REMARK 620 2 ASN A 207 OD1 88.1 REMARK 620 3 HOH A 688 O 147.2 83.7 REMARK 620 4 HOH B 514 O 143.1 106.4 69.3 REMARK 620 5 HOH B 554 O 91.5 162.3 87.2 84.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 26 OE1 REMARK 620 2 HIS B 164 ND1 104.3 REMARK 620 3 5RP B 501 O14 163.3 89.2 REMARK 620 4 5RP B 501 O10 96.7 96.2 91.4 REMARK 620 5 5RP B 501 O13 90.6 162.1 74.6 91.9 REMARK 620 6 HOH B 706 O 88.4 88.5 82.1 171.9 81.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 26 OE2 REMARK 620 2 5RP B 501 O4 122.7 REMARK 620 3 5RP B 501 O13 67.3 61.6 REMARK 620 4 5RP B 501 O11 87.4 122.4 97.6 REMARK 620 5 5RP B 501 O8 106.6 67.0 59.0 57.1 REMARK 620 6 HOH B 664 O 162.7 71.3 118.5 75.7 67.8 REMARK 620 7 HOH B 705 O 79.8 70.1 82.8 166.0 132.3 116.4 REMARK 620 8 HOH B 707 O 78.5 148.2 145.7 78.0 134.1 93.7 93.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5RP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5RP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PVW RELATED DB: PDB REMARK 900 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE FROM M. JANNASCHII REMARK 900 RELATED ID: 1PVY RELATED DB: PDB REMARK 900 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE FROM M. JANNASCHII IN REMARK 900 COMPLEX WITH RIBULOSE 5-PHOSPHATE DBREF 1SNN A 1 227 UNP Q60364 RIBB_METJA 1 227 DBREF 1SNN B 1 227 UNP Q60364 RIBB_METJA 1 227 SEQADV 1SNN SER A 147 UNP Q60364 HIS 147 ENGINEERED MUTATION SEQADV 1SNN SER B 147 UNP Q60364 HIS 147 ENGINEERED MUTATION SEQRES 1 A 227 MET ASN ASN VAL GLU LYS ALA ILE GLU ALA LEU LYS LYS SEQRES 2 A 227 GLY GLU ILE ILE LEU VAL TYR ASP SER ASP GLU ARG GLU SEQRES 3 A 227 GLY GLU THR ASP MET VAL VAL ALA SER GLN PHE ILE THR SEQRES 4 A 227 PRO GLU HIS ILE ARG ILE MET ARG LYS ASP ALA GLY GLY SEQRES 5 A 227 LEU ILE CYS THR ALA LEU HIS PRO ASP ILE CYS ASN LYS SEQRES 6 A 227 LEU GLY ILE PRO PHE MET VAL ASP ILE LEU GLU PHE ALA SEQRES 7 A 227 SER GLN LYS PHE LYS VAL LEU ARG GLU LEU TYR PRO ASN SEQRES 8 A 227 ASP ILE PRO TYR ASP GLU LYS SER SER PHE SER ILE THR SEQRES 9 A 227 ILE ASN HIS ARG LYS THR PHE THR GLY ILE THR ASP ASN SEQRES 10 A 227 ASP ARG ALA PHE THR ILE LYS LYS LEU ALA GLU LEU VAL SEQRES 11 A 227 LYS GLU GLY ARG PHE ASN ASP PHE GLY LYS GLU PHE ARG SEQRES 12 A 227 SER PRO GLY SER VAL THR LEU LEU ARG ALA ALA GLU GLY SEQRES 13 A 227 LEU VAL LYS ASN ARG GLN GLY HIS THR GLU MET THR VAL SEQRES 14 A 227 ALA LEU ALA GLU LEU ALA ASN LEU VAL PRO ILE THR THR SEQRES 15 A 227 ILE CYS GLU MET MET GLY ASP ASP GLY ASN ALA MET SER SEQRES 16 A 227 LYS ASN GLU THR LYS ARG TYR ALA GLU LYS HIS ASN LEU SEQRES 17 A 227 ILE TYR LEU SER GLY GLU GLU ILE ILE ASN TYR TYR LEU SEQRES 18 A 227 ASP LYS TYR LEU LYS ASP SEQRES 1 B 227 MET ASN ASN VAL GLU LYS ALA ILE GLU ALA LEU LYS LYS SEQRES 2 B 227 GLY GLU ILE ILE LEU VAL TYR ASP SER ASP GLU ARG GLU SEQRES 3 B 227 GLY GLU THR ASP MET VAL VAL ALA SER GLN PHE ILE THR SEQRES 4 B 227 PRO GLU HIS ILE ARG ILE MET ARG LYS ASP ALA GLY GLY SEQRES 5 B 227 LEU ILE CYS THR ALA LEU HIS PRO ASP ILE CYS ASN LYS SEQRES 6 B 227 LEU GLY ILE PRO PHE MET VAL ASP ILE LEU GLU PHE ALA SEQRES 7 B 227 SER GLN LYS PHE LYS VAL LEU ARG GLU LEU TYR PRO ASN SEQRES 8 B 227 ASP ILE PRO TYR ASP GLU LYS SER SER PHE SER ILE THR SEQRES 9 B 227 ILE ASN HIS ARG LYS THR PHE THR GLY ILE THR ASP ASN SEQRES 10 B 227 ASP ARG ALA PHE THR ILE LYS LYS LEU ALA GLU LEU VAL SEQRES 11 B 227 LYS GLU GLY ARG PHE ASN ASP PHE GLY LYS GLU PHE ARG SEQRES 12 B 227 SER PRO GLY SER VAL THR LEU LEU ARG ALA ALA GLU GLY SEQRES 13 B 227 LEU VAL LYS ASN ARG GLN GLY HIS THR GLU MET THR VAL SEQRES 14 B 227 ALA LEU ALA GLU LEU ALA ASN LEU VAL PRO ILE THR THR SEQRES 15 B 227 ILE CYS GLU MET MET GLY ASP ASP GLY ASN ALA MET SER SEQRES 16 B 227 LYS ASN GLU THR LYS ARG TYR ALA GLU LYS HIS ASN LEU SEQRES 17 B 227 ILE TYR LEU SER GLY GLU GLU ILE ILE ASN TYR TYR LEU SEQRES 18 B 227 ASP LYS TYR LEU LYS ASP HET 5RP A 401 14 HET ZN A 402 1 HET CA A 403 1 HET CA A 601 1 HET CA A 602 1 HET ZN A 603 1 HET 5RP B 501 14 HET ZN B 502 1 HET CA B 503 1 HETNAM 5RP RIBULOSE-5-PHOSPHATE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 3 5RP 2(C5 H11 O8 P) FORMUL 4 ZN 3(ZN 2+) FORMUL 5 CA 4(CA 2+) FORMUL 12 HOH *352(H2 O) HELIX 1 1 ASN A 2 LYS A 13 1 12 HELIX 2 2 GLN A 36 ILE A 38 5 3 HELIX 3 3 THR A 39 ALA A 50 1 12 HELIX 4 4 HIS A 59 GLY A 67 1 9 HELIX 5 5 PHE A 70 SER A 79 1 10 HELIX 6 6 PHE A 82 LEU A 88 1 7 HELIX 7 7 THR A 115 GLU A 132 1 18 HELIX 8 8 ARG A 134 ASN A 136 5 3 HELIX 9 9 ASP A 137 GLU A 141 1 5 HELIX 10 10 GLY A 156 ASN A 160 5 5 HELIX 11 11 GLY A 163 ALA A 175 1 13 HELIX 12 12 SER A 195 ASN A 207 1 13 HELIX 13 13 GLY A 213 TYR A 220 1 8 HELIX 14 14 ASN B 3 LYS B 13 1 11 HELIX 15 15 GLN B 36 ILE B 38 5 3 HELIX 16 16 THR B 39 ALA B 50 1 12 HELIX 17 17 HIS B 59 GLY B 67 1 9 HELIX 18 18 PHE B 70 SER B 79 1 10 HELIX 19 19 GLN B 80 LYS B 81 5 2 HELIX 20 20 PHE B 82 PHE B 82 5 1 HELIX 21 21 LYS B 83 LEU B 88 1 6 HELIX 22 22 PRO B 94 LYS B 98 5 5 HELIX 23 23 THR B 115 GLY B 133 1 19 HELIX 24 24 ARG B 134 ASN B 136 5 3 HELIX 25 25 ASP B 137 GLU B 141 1 5 HELIX 26 26 GLY B 156 ASN B 160 5 5 HELIX 27 27 GLY B 163 ALA B 175 1 13 HELIX 28 28 SER B 195 HIS B 206 1 12 HELIX 29 29 GLY B 213 LEU B 221 1 9 SHEET 1 A 7 PHE A 101 HIS A 107 0 SHEET 2 A 7 PHE A 142 ARG A 152 -1 O LEU A 150 N ILE A 103 SHEET 3 A 7 GLY A 51 LEU A 58 1 N THR A 56 O THR A 149 SHEET 4 A 7 ILE A 180 MET A 186 -1 O ILE A 183 N CYS A 55 SHEET 5 A 7 THR A 29 ALA A 34 -1 N MET A 31 O CYS A 184 SHEET 6 A 7 ILE A 17 TYR A 20 -1 N ILE A 17 O VAL A 32 SHEET 7 A 7 TYR A 210 SER A 212 1 O LEU A 211 N TYR A 20 SHEET 1 B 7 PHE B 101 HIS B 107 0 SHEET 2 B 7 PHE B 142 ARG B 152 -1 O LEU B 150 N SER B 102 SHEET 3 B 7 GLY B 51 LEU B 58 1 N LEU B 58 O LEU B 151 SHEET 4 B 7 ILE B 180 MET B 186 -1 O ILE B 183 N CYS B 55 SHEET 5 B 7 THR B 29 ALA B 34 -1 N MET B 31 O CYS B 184 SHEET 6 B 7 ILE B 17 TYR B 20 -1 N ILE B 17 O VAL B 32 SHEET 7 B 7 TYR B 210 SER B 212 1 O LEU B 211 N LEU B 18 LINK OE1 GLU A 26 ZN ZN A 402 1555 1555 1.92 LINK OE2 GLU A 26 CA CA A 403 1555 1555 2.35 LINK OH TYR A 95 CA CA A 403 1555 1555 2.41 LINK OD2 ASP A 96 CA CA A 601 1555 1555 2.49 LINK OE1 GLU A 97 CA CA A 601 1555 1555 2.38 LINK ND1 HIS A 164 ZN ZN A 402 1555 1555 2.16 LINK O GLU A 204 CA CA A 602 1555 1555 2.41 LINK ND1 HIS A 206 ZN ZN A 603 1555 1555 2.02 LINK OD1 ASN A 207 CA CA A 602 1555 1555 2.28 LINK O10 5RP A 401 ZN ZN A 402 1555 1555 2.13 LINK O13 5RP A 401 ZN ZN A 402 1555 1555 2.41 LINK O14 5RP A 401 ZN ZN A 402 1555 1555 2.20 LINK O11 5RP A 401 CA CA A 403 1555 1555 2.50 LINK O8 5RP A 401 CA CA A 403 1555 1555 2.75 LINK O13 5RP A 401 CA CA A 403 1555 1555 2.40 LINK O4 5RP A 401 CA CA A 403 1555 1555 2.58 LINK ZN ZN A 402 O HOH A 751 1555 1555 2.20 LINK CA CA A 403 O HOH A 668 1555 1555 2.58 LINK CA CA A 403 O HOH A 750 1555 1555 2.33 LINK CA CA A 601 O HOH A 654 1555 1555 2.33 LINK CA CA A 601 O HOH A 671 1555 1555 2.24 LINK CA CA A 601 O HOH A 676 1555 1555 2.35 LINK CA CA A 601 O HOH A 706 1555 1555 2.43 LINK CA CA A 602 O HOH A 688 1555 1555 2.32 LINK CA CA A 602 O HOH B 514 1555 1455 2.45 LINK CA CA A 602 O HOH B 554 1555 1455 2.38 LINK OE1 GLU B 26 ZN ZN B 502 1555 1555 1.99 LINK OE2 GLU B 26 CA CA B 503 1555 1555 2.37 LINK ND1 HIS B 164 ZN ZN B 502 1555 1555 2.26 LINK O14 5RP B 501 ZN ZN B 502 1555 1555 2.21 LINK O10 5RP B 501 ZN ZN B 502 1555 1555 2.09 LINK O13 5RP B 501 ZN ZN B 502 1555 1555 2.42 LINK O4 5RP B 501 CA CA B 503 1555 1555 2.74 LINK O13 5RP B 501 CA CA B 503 1555 1555 2.60 LINK O11 5RP B 501 CA CA B 503 1555 1555 2.39 LINK O8 5RP B 501 CA CA B 503 1555 1555 2.87 LINK ZN ZN B 502 O HOH B 706 1555 1555 2.12 LINK CA CA B 503 O HOH B 664 1555 1555 2.46 LINK CA CA B 503 O HOH B 705 1555 1555 2.30 LINK CA CA B 503 O HOH B 707 1555 1555 2.28 CISPEP 1 SER A 144 PRO A 145 0 0.22 CISPEP 2 SER B 144 PRO B 145 0 0.25 SITE 1 AC1 19 ARG A 25 GLU A 26 ASP A 30 CYS A 55 SITE 2 AC1 19 TYR A 95 PHE A 101 ARG A 161 GLY A 163 SITE 3 AC1 19 HIS A 164 THR A 165 ILE A 183 GLU A 185 SITE 4 AC1 19 ZN A 402 CA A 403 HOH A 623 HOH A 668 SITE 5 AC1 19 HOH A 746 HOH A 750 HOH A 751 SITE 1 AC2 20 ARG B 25 GLU B 26 ASP B 30 CYS B 55 SITE 2 AC2 20 PHE B 101 ARG B 161 GLY B 163 HIS B 164 SITE 3 AC2 20 THR B 165 GLU B 185 ZN B 502 CA B 503 SITE 4 AC2 20 HOH B 632 HOH B 664 HOH B 672 HOH B 679 SITE 5 AC2 20 HOH B 686 HOH B 705 HOH B 706 HOH B 707 SITE 1 AC3 4 GLU A 26 HIS A 164 5RP A 401 HOH A 751 SITE 1 AC4 5 GLU A 26 TYR A 95 5RP A 401 HOH A 668 SITE 2 AC4 5 HOH A 750 SITE 1 AC5 4 GLU B 26 HIS B 164 5RP B 501 HOH B 706 SITE 1 AC6 5 GLU B 26 5RP B 501 HOH B 664 HOH B 705 SITE 2 AC6 5 HOH B 707 SITE 1 AC7 6 ASP A 96 GLU A 97 HOH A 654 HOH A 671 SITE 2 AC7 6 HOH A 676 HOH A 706 SITE 1 AC8 5 GLU A 204 ASN A 207 HOH A 688 HOH B 514 SITE 2 AC8 5 HOH B 554 SITE 1 AC9 1 HIS A 206 CRYST1 53.395 69.366 57.574 90.00 93.58 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018728 0.000000 0.001172 0.00000 SCALE2 0.000000 0.014416 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017403 0.00000