data_1SPK # _entry.id 1SPK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1SPK pdb_00001spk 10.2210/pdb1spk/pdb RCSB RCSB021897 ? ? WWPDB D_1000021897 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmt007006892.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1SPK _pdbx_database_status.recvd_initial_deposition_date 2004-03-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Suzuki, Y.' 1 'Abe, T.' 2 'Hirota, H.' 3 'Hayashi, F.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Solution Structure of RSGI RUH-010, an SH3 Domain from Mouse cDNA' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Suzuki, Y.' 1 ? primary 'Abe, T.' 2 ? primary 'Hirota, H.' 3 ? primary 'Hayashi, F.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'RIKEN cDNA 1300006M19' _entity.formula_weight 7664.490 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'Putative SH3 domain(Residues 343-401 in seq. db No.)' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RSGI RUH-010' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSGPSSG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmt007006892.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 GLN n 1 9 LYS n 1 10 VAL n 1 11 LYS n 1 12 THR n 1 13 ILE n 1 14 PHE n 1 15 PRO n 1 16 HIS n 1 17 THR n 1 18 ALA n 1 19 GLY n 1 20 ASN n 1 21 ASN n 1 22 LYS n 1 23 THR n 1 24 LEU n 1 25 LEU n 1 26 SER n 1 27 PHE n 1 28 ALA n 1 29 GLN n 1 30 GLY n 1 31 ASP n 1 32 VAL n 1 33 LEU n 1 34 THR n 1 35 LEU n 1 36 LEU n 1 37 ILE n 1 38 PRO n 1 39 GLU n 1 40 GLU n 1 41 LYS n 1 42 ASP n 1 43 GLY n 1 44 TRP n 1 45 LEU n 1 46 TYR n 1 47 GLY n 1 48 GLU n 1 49 HIS n 1 50 ASP n 1 51 THR n 1 52 THR n 1 53 LYS n 1 54 ALA n 1 55 ARG n 1 56 GLY n 1 57 TRP n 1 58 PHE n 1 59 PRO n 1 60 SER n 1 61 SER n 1 62 TYR n 1 63 THR n 1 64 LYS n 1 65 LEU n 1 66 LEU n 1 67 SER n 1 68 GLY n 1 69 PRO n 1 70 SER n 1 71 SER n 1 72 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene 'RIKEN cDNA 1300006M19' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ liver _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P030120-88 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9DBJ3_MOUSE _struct_ref.pdbx_db_accession Q9DBJ3 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLL _struct_ref.pdbx_align_begin 343 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1SPK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 66 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9DBJ3 _struct_ref_seq.db_align_beg 343 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 401 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 66 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1SPK GLY A 1 ? UNP Q9DBJ3 ? ? 'cloning artifact' 1 1 1 1SPK SER A 2 ? UNP Q9DBJ3 ? ? 'cloning artifact' 2 2 1 1SPK SER A 3 ? UNP Q9DBJ3 ? ? 'cloning artifact' 3 3 1 1SPK GLY A 4 ? UNP Q9DBJ3 ? ? 'cloning artifact' 4 4 1 1SPK SER A 5 ? UNP Q9DBJ3 ? ? 'cloning artifact' 5 5 1 1SPK SER A 6 ? UNP Q9DBJ3 ? ? 'cloning artifact' 6 6 1 1SPK GLY A 7 ? UNP Q9DBJ3 ? ? 'cloning artifact' 7 7 1 1SPK SER A 67 ? UNP Q9DBJ3 ? ? 'cloning artifact' 67 8 1 1SPK GLY A 68 ? UNP Q9DBJ3 ? ? 'cloning artifact' 68 9 1 1SPK PRO A 69 ? UNP Q9DBJ3 ? ? 'cloning artifact' 69 10 1 1SPK SER A 70 ? UNP Q9DBJ3 ? ? 'cloning artifact' 70 11 1 1SPK SER A 71 ? UNP Q9DBJ3 ? ? 'cloning artifact' 71 12 1 1SPK GLY A 72 ? UNP Q9DBJ3 ? ? 'cloning artifact' 72 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 3D_15N-separated_NOESY 2 1 1 3D_13C-separated_NOESY # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100mM _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.0mM protein; 20mM sodium phosphate; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.field_strength 800 # _pdbx_nmr_refine.entry_id 1SPK _pdbx_nmr_refine.method 'simulated annealing, torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1SPK _pdbx_nmr_details.text 'The structure was determined using triple-resonance NMR spectroscopy.' # _pdbx_nmr_ensemble.entry_id 1SPK _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy, target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1SPK _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy, target function' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal VNMR 6.1c collection Varian 1 NMRPipe 20020425 processing 'Delaglio, F.' 2 NMRView 5.0.4 'data analysis' 'Johnson, B. A.' 3 KUJIRA 0.853 'data analysis' 'Kobayashi, N.' 4 CYANA 1.0.7 refinement 'Guntert, P.' 5 # _exptl.entry_id 1SPK _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1SPK _struct.title 'Solution Structure of RSGI RUH-010, an SH3 Domain from Mouse cDNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1SPK _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;structural genomics, SH3 domain, five-stranded barrel, mouse cDNA, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id SER _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 60 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id TYR _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 62 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id SER _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 60 _struct_conf.end_auth_comp_id TYR _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 62 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 55 ? PRO A 59 ? ARG A 55 PRO A 59 A 2 TRP A 44 ? HIS A 49 ? TRP A 44 HIS A 49 A 3 VAL A 32 ? LEU A 35 ? VAL A 32 LEU A 35 A 4 LYS A 9 ? THR A 12 ? LYS A 9 THR A 12 A 5 THR A 63 ? LEU A 65 ? THR A 63 LEU A 65 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 58 ? O PHE A 58 N LEU A 45 ? N LEU A 45 A 2 3 O GLU A 48 ? O GLU A 48 N THR A 34 ? N THR A 34 A 3 4 O LEU A 33 ? O LEU A 33 N VAL A 10 ? N VAL A 10 A 4 5 N LYS A 11 ? N LYS A 11 O LYS A 64 ? O LYS A 64 # _database_PDB_matrix.entry_id 1SPK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1SPK _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 PHE 14 14 14 PHE PHE A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 HIS 16 16 16 HIS HIS A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 ASP 31 31 31 ASP ASP A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 TRP 44 44 44 TRP TRP A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 TYR 46 46 46 TYR TYR A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 HIS 49 49 49 HIS HIS A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 TRP 57 57 57 TRP TRP A . n A 1 58 PHE 58 58 58 PHE PHE A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 TYR 62 62 62 TYR TYR A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 GLY 72 72 72 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-09-17 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ;HELIX DETERMINATION METHOD: AUTHOR DETERMINED ; 700 ;SHEET DETERMINATION METHOD: AUTHOR DETERMINED ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H A LYS 11 ? ? O A LYS 64 ? ? 1.58 2 1 H A LEU 45 ? ? O A PHE 58 ? ? 1.58 3 8 H A LEU 45 ? ? O A PHE 58 ? ? 1.60 4 10 H A LYS 41 ? ? O A TRP 44 ? ? 1.53 5 10 O A PRO 59 ? ? H A TYR 62 ? ? 1.58 6 10 O A THR 23 ? ? H A TRP 57 ? ? 1.59 7 11 H A LEU 45 ? ? O A PHE 58 ? ? 1.56 8 12 H A LEU 45 ? ? O A PHE 58 ? ? 1.59 9 15 H A LEU 45 ? ? O A PHE 58 ? ? 1.53 10 15 O A PRO 59 ? ? H A TYR 62 ? ? 1.59 11 16 H A LYS 41 ? ? O A TRP 44 ? ? 1.51 12 16 O A PRO 59 ? ? H A TYR 62 ? ? 1.58 13 16 O A THR 23 ? ? H A TRP 57 ? ? 1.58 14 17 H A LYS 11 ? ? O A LYS 64 ? ? 1.57 15 19 O A THR 34 ? ? H A GLU 48 ? ? 1.53 16 19 H A LEU 45 ? ? O A PHE 58 ? ? 1.59 17 20 H A LEU 45 ? ? O A PHE 58 ? ? 1.58 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 8 ? ? -45.22 169.81 2 1 HIS A 16 ? ? -166.25 99.60 3 1 ASN A 20 ? ? 80.50 -55.60 4 1 ASP A 31 ? ? -47.48 150.88 5 1 ASP A 50 ? ? -87.96 45.26 6 1 THR A 51 ? ? -156.68 -72.43 7 1 LYS A 53 ? ? 78.50 -0.70 8 1 LEU A 66 ? ? -60.44 -178.66 9 1 SER A 70 ? ? -151.48 73.01 10 2 GLN A 8 ? ? -52.67 170.60 11 2 ASN A 21 ? ? -43.60 160.15 12 2 THR A 23 ? ? -170.01 -46.49 13 2 ASP A 50 ? ? -87.82 45.89 14 2 THR A 51 ? ? -153.79 -76.77 15 2 LEU A 66 ? ? -62.10 -168.31 16 2 SER A 70 ? ? 69.14 124.02 17 3 SER A 5 ? ? 66.46 146.01 18 3 GLN A 8 ? ? -44.69 169.27 19 3 HIS A 16 ? ? -165.32 96.34 20 3 ASN A 20 ? ? 72.99 -60.53 21 3 ASP A 50 ? ? -90.16 41.74 22 3 THR A 51 ? ? -159.19 -83.28 23 3 LEU A 66 ? ? -58.11 178.68 24 3 SER A 67 ? ? -162.83 95.16 25 3 SER A 70 ? ? -156.20 -57.98 26 4 SER A 2 ? ? -138.14 -59.60 27 4 SER A 6 ? ? 62.92 93.05 28 4 GLN A 8 ? ? -46.75 168.09 29 4 HIS A 16 ? ? -161.78 79.15 30 4 ASN A 20 ? ? 77.29 -58.73 31 4 ASP A 31 ? ? -46.27 151.09 32 4 ASP A 42 ? ? 60.01 66.87 33 4 ASP A 50 ? ? -88.72 43.77 34 4 THR A 51 ? ? -156.60 -66.41 35 4 LYS A 53 ? ? 78.41 -0.47 36 4 SER A 71 ? ? 53.59 99.70 37 5 SER A 5 ? ? -174.24 130.71 38 5 HIS A 16 ? ? -163.13 81.95 39 5 ASN A 20 ? ? -139.64 -52.67 40 5 ASP A 50 ? ? -88.05 45.23 41 5 THR A 51 ? ? -157.87 -69.94 42 5 LYS A 53 ? ? 78.49 -0.88 43 5 SER A 70 ? ? 57.96 88.96 44 5 SER A 71 ? ? 47.33 86.47 45 6 SER A 2 ? ? 64.60 81.59 46 6 GLN A 8 ? ? -44.68 169.08 47 6 HIS A 16 ? ? -161.35 95.32 48 6 ASP A 31 ? ? -48.16 151.90 49 6 ASP A 50 ? ? -90.63 44.40 50 6 THR A 51 ? ? -161.15 -79.54 51 6 LEU A 66 ? ? -58.95 174.09 52 6 SER A 71 ? ? 44.87 88.94 53 7 SER A 5 ? ? -179.03 146.30 54 7 GLN A 8 ? ? -54.21 170.47 55 7 ASN A 20 ? ? 79.90 -66.69 56 7 ASN A 21 ? ? 39.08 -156.36 57 7 LYS A 22 ? ? -122.82 -50.54 58 7 ASP A 31 ? ? -45.62 152.64 59 7 ASP A 50 ? ? -88.25 44.51 60 7 THR A 51 ? ? -153.51 -78.19 61 7 LEU A 66 ? ? -59.62 174.80 62 8 SER A 3 ? ? -49.28 107.38 63 8 SER A 5 ? ? -174.39 112.41 64 8 GLN A 8 ? ? -44.90 169.16 65 8 HIS A 16 ? ? -160.84 76.54 66 8 ASN A 21 ? ? -48.65 175.54 67 8 LYS A 22 ? ? -137.11 -47.02 68 8 ASP A 50 ? ? -93.01 46.02 69 8 THR A 51 ? ? -159.18 -69.10 70 8 LYS A 53 ? ? 78.48 -0.70 71 8 LEU A 66 ? ? -58.97 171.45 72 8 SER A 71 ? ? 60.44 160.80 73 9 SER A 5 ? ? 61.44 75.87 74 9 GLN A 8 ? ? -44.45 168.66 75 9 HIS A 16 ? ? -156.09 80.02 76 9 ASN A 20 ? ? -131.99 -57.28 77 9 ASN A 21 ? ? -46.56 157.98 78 9 ASP A 50 ? ? -88.40 45.37 79 9 THR A 51 ? ? -153.81 -70.74 80 9 SER A 70 ? ? 60.31 113.00 81 9 SER A 71 ? ? 49.38 97.74 82 10 SER A 3 ? ? -177.57 143.38 83 10 SER A 5 ? ? -113.69 -70.61 84 10 GLN A 8 ? ? -52.63 170.23 85 10 HIS A 16 ? ? -161.37 92.33 86 10 ASN A 20 ? ? -130.33 -50.93 87 10 ASN A 21 ? ? -43.20 154.76 88 10 LYS A 41 ? ? -98.30 52.41 89 10 ASP A 50 ? ? -88.82 43.76 90 10 THR A 51 ? ? -157.52 -84.28 91 10 LEU A 66 ? ? -59.93 170.80 92 10 SER A 70 ? ? 63.71 142.31 93 11 SER A 3 ? ? -159.72 76.82 94 11 HIS A 16 ? ? -161.16 95.60 95 11 ALA A 18 ? ? -91.51 -61.24 96 11 LYS A 22 ? ? 73.73 -59.05 97 11 LYS A 41 ? ? -66.66 -166.70 98 11 ASP A 50 ? ? -89.68 43.50 99 11 THR A 51 ? ? -162.90 -77.58 100 11 SER A 71 ? ? -121.74 -58.69 101 12 SER A 2 ? ? 55.86 166.98 102 12 GLN A 8 ? ? -44.78 169.22 103 12 THR A 23 ? ? -172.49 -40.04 104 12 LEU A 24 ? ? -48.86 108.68 105 12 PHE A 27 ? ? -174.35 -177.89 106 12 ASP A 42 ? ? 57.68 70.60 107 12 ASP A 50 ? ? -87.93 46.00 108 12 THR A 51 ? ? -156.97 -67.99 109 12 LYS A 53 ? ? 78.53 -0.42 110 12 SER A 71 ? ? 74.83 -59.09 111 13 SER A 3 ? ? 54.30 97.05 112 13 ASN A 20 ? ? 80.42 -67.28 113 13 ASN A 21 ? ? -52.30 170.73 114 13 THR A 23 ? ? -167.03 -43.13 115 13 ASP A 31 ? ? -41.89 150.10 116 13 ASP A 42 ? ? 173.73 39.58 117 13 ASP A 50 ? ? -87.74 45.06 118 13 THR A 51 ? ? -157.33 -72.74 119 14 SER A 3 ? ? 44.36 83.12 120 14 HIS A 16 ? ? -160.26 91.61 121 14 ASN A 20 ? ? 80.46 -68.85 122 14 ASP A 50 ? ? -87.04 45.80 123 14 THR A 51 ? ? -153.40 -75.03 124 14 SER A 67 ? ? -155.02 89.83 125 14 SER A 70 ? ? -66.29 93.43 126 15 GLN A 8 ? ? -45.24 169.81 127 15 HIS A 16 ? ? -158.87 86.74 128 15 LYS A 41 ? ? -65.16 -163.33 129 15 ASP A 50 ? ? -87.50 45.42 130 15 THR A 51 ? ? -159.64 -93.12 131 15 LEU A 66 ? ? -55.22 171.71 132 15 SER A 71 ? ? 68.44 156.57 133 16 SER A 3 ? ? 50.94 82.79 134 16 SER A 5 ? ? -139.22 -97.27 135 16 SER A 6 ? ? -56.30 91.63 136 16 ASN A 20 ? ? 79.03 -62.15 137 16 ASN A 21 ? ? -56.07 179.62 138 16 LYS A 22 ? ? -131.65 -62.53 139 16 LEU A 36 ? ? -145.52 43.75 140 16 LYS A 41 ? ? -92.74 51.83 141 16 ASP A 50 ? ? -85.49 47.64 142 16 THR A 51 ? ? -158.42 -76.87 143 16 SER A 71 ? ? -174.30 145.21 144 17 ASN A 20 ? ? 80.98 -59.14 145 17 LYS A 22 ? ? -120.70 -54.73 146 17 GLN A 29 ? ? -39.54 118.52 147 17 ASP A 31 ? ? -49.65 153.35 148 17 ASP A 50 ? ? -89.29 43.13 149 17 THR A 51 ? ? -154.01 -71.50 150 17 LEU A 66 ? ? -55.83 171.38 151 17 SER A 71 ? ? 59.56 154.11 152 18 SER A 2 ? ? -121.89 -58.59 153 18 GLN A 8 ? ? -51.10 170.39 154 18 ALA A 18 ? ? -141.88 15.77 155 18 ASP A 31 ? ? -47.94 152.01 156 18 ASP A 42 ? ? 75.24 32.59 157 18 ASP A 50 ? ? -98.81 50.51 158 18 THR A 51 ? ? -155.78 -44.08 159 18 LYS A 53 ? ? 79.44 -2.84 160 18 LEU A 66 ? ? -55.35 171.22 161 18 SER A 71 ? ? -136.12 -58.75 162 19 HIS A 16 ? ? -171.29 84.22 163 19 ASN A 20 ? ? 80.20 -55.01 164 19 ASN A 21 ? ? -49.90 169.78 165 19 LYS A 22 ? ? -126.94 -57.87 166 19 LEU A 25 ? ? -76.93 -150.73 167 19 SER A 26 ? ? -167.37 119.63 168 19 GLN A 29 ? ? -38.36 118.71 169 19 ASP A 31 ? ? -48.36 154.83 170 19 ASP A 50 ? ? -96.39 46.27 171 19 THR A 51 ? ? -161.68 -72.66 172 19 LYS A 53 ? ? 80.20 -3.73 173 20 SER A 3 ? ? 53.81 98.70 174 20 HIS A 16 ? ? -164.72 101.10 175 20 ASP A 50 ? ? -92.87 46.14 176 20 THR A 51 ? ? -155.99 -75.23 #