HEADER TRANSFERASE 17-MAR-04 1SQ6 TITLE PLASMODIUM FALCIPARUM HOMOLOG OF URIDINE PHOSPHORYLASE/PURINE TITLE 2 NUCLEOSIDE PHOSPHORYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDINE PHOSPHORYLASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.2.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 STRAIN: 3D7; SOURCE 5 GENE: PLASMODB CHR5.GEN_243; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21STAR/DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: T7 SYSTEM; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS STRUCTURAL GENOMICS, ALPHA+BETA, PSI, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA CONSORTIUM, SGPP, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.ROBIEN,W.G.J.HOL,STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA AUTHOR 2 CONSORTIUM (SGPP) REVDAT 4 13-JUL-11 1SQ6 1 VERSN REVDAT 3 24-FEB-09 1SQ6 1 VERSN REVDAT 2 01-FEB-05 1SQ6 1 AUTHOR KEYWDS REMARK REVDAT 1 06-APR-04 1SQ6 0 JRNL AUTH C.SCHNICK,M.A.ROBIEN,A.M.BRZOZOWSKI,E.J.DODSON, JRNL AUTH 2 G.N.MURSHUDOV,L.ANDERSON,J.R.LUFT,C.MEHLIN,W.G.HOL, JRNL AUTH 3 J.A.BRANNIGAN,A.J.WILKINSON JRNL TITL STRUCTURES OF PLASMODIUM FALCIPARUM PURINE NUCLEOSIDE JRNL TITL 2 PHOSPHORYLASE COMPLEXED WITH SULFATE AND ITS NATURAL JRNL TITL 3 SUBSTRATE INOSINE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 61 1245 2005 JRNL REFN ISSN 0907-4449 JRNL PMID 16131758 JRNL DOI 10.1107/S0907444905020251 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.6 REMARK 3 NUMBER OF REFLECTIONS : 7135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 354 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 551 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.4340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1709 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.14000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.347 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.219 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.170 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1737 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2346 ; 1.269 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 223 ; 5.931 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 276 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1261 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 793 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 97 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 55 ; 0.189 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.165 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1112 ; 1.855 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1791 ; 3.286 ; 6.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 625 ; 4.156 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 555 ; 6.106 ; 8.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SQ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-04. REMARK 100 THE RCSB ID CODE IS RCSB021908. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-DEC-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : DOUBLE CRYSTAL SI(111) 50 MICRON REMARK 200 COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8025 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 28.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 69.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13600 REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 22.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.41800 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, AMMONIUM SULFATE, MOPS, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 47.54350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.44925 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.92867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 47.54350 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.44925 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.92867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 47.54350 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.44925 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.92867 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 47.54350 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.44925 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.92867 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 47.54350 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.44925 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.92867 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 47.54350 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.44925 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.92867 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.89851 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 89.85733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 54.89851 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 89.85733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 54.89851 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 89.85733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 54.89851 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.85733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 54.89851 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 89.85733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 54.89851 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 89.85733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 THE AUTHORS ARE NOT CERTAIN THE BIOLOGICAL UNIT IS A REMARK 300 MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 20780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -217.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 95.08700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 164.69552 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -95.08700 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 164.69552 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 -95.08700 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 54.89851 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 89.85733 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 219.59402 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 89.85733 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 95.08700 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 54.89851 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 89.85733 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 509 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 MSE A 9 REMARK 465 ASP A 10 REMARK 465 ASN A 11 REMARK 465 CYS A 216 REMARK 465 PRO A 217 REMARK 465 PHE A 218 REMARK 465 LYS A 219 REMARK 465 TRP A 220 REMARK 465 ASP A 221 REMARK 465 GLU A 222 REMARK 465 GLY A 223 REMARK 465 ASP A 224 REMARK 465 PHE A 225 REMARK 465 ASP A 226 REMARK 465 ASN A 227 REMARK 465 ASN A 228 REMARK 465 LEU A 229 REMARK 465 VAL A 230 REMARK 465 PRO A 231 REMARK 465 ALA A 253 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 140 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 166 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 53 -129.75 46.15 REMARK 500 ASP A 106 2.46 80.32 REMARK 500 LEU A 107 -80.89 -135.06 REMARK 500 GLU A 122 54.31 -100.22 REMARK 500 ASP A 123 -162.78 -128.21 REMARK 500 HIS A 131 143.12 -34.32 REMARK 500 ILE A 173 -61.76 -98.22 REMARK 500 GLU A 190 -154.08 -141.85 REMARK 500 LYS A 204 40.38 70.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PFAL008421AAA RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE DEPOSITORS NOTE THAT THE ABSENCE OF REMARK 999 ELECTRON DENSITY FOR PHE 140 MAY BE DUE REMARK 999 TO A DISORDERED SIDE CHAIN OR ALTERNATIVELY REMARK 999 MAY BE DUE TO A UNEXPECTED CLONING ARTIFACT. DBREF 1SQ6 A 9 253 UNP Q8I3X4 Q8I3X4_PLAF7 1 245 SEQADV 1SQ6 MSE A 1 UNP Q8I3X4 CLONING ARTIFACT SEQADV 1SQ6 ALA A 2 UNP Q8I3X4 CLONING ARTIFACT SEQADV 1SQ6 HIS A 3 UNP Q8I3X4 CLONING ARTIFACT SEQADV 1SQ6 HIS A 4 UNP Q8I3X4 CLONING ARTIFACT SEQADV 1SQ6 HIS A 5 UNP Q8I3X4 CLONING ARTIFACT SEQADV 1SQ6 HIS A 6 UNP Q8I3X4 CLONING ARTIFACT SEQADV 1SQ6 HIS A 7 UNP Q8I3X4 CLONING ARTIFACT SEQADV 1SQ6 HIS A 8 UNP Q8I3X4 CLONING ARTIFACT SEQADV 1SQ6 MSE A 9 UNP Q8I3X4 MET 1 MODIFIED RESIDUE SEQADV 1SQ6 MSE A 167 UNP Q8I3X4 MET 159 MODIFIED RESIDUE SEQADV 1SQ6 MSE A 191 UNP Q8I3X4 MET 183 MODIFIED RESIDUE SEQADV 1SQ6 MSE A 197 UNP Q8I3X4 MET 189 MODIFIED RESIDUE SEQADV 1SQ6 MSE A 237 UNP Q8I3X4 MET 229 MODIFIED RESIDUE SEQRES 1 A 253 MSE ALA HIS HIS HIS HIS HIS HIS MSE ASP ASN LEU LEU SEQRES 2 A 253 ARG HIS LEU LYS ILE SER LYS GLU GLN ILE THR PRO VAL SEQRES 3 A 253 VAL LEU VAL VAL GLY ASP PRO GLY ARG VAL ASP LYS ILE SEQRES 4 A 253 LYS VAL VAL CYS ASP SER TYR VAL ASP LEU ALA TYR ASN SEQRES 5 A 253 ARG GLU TYR LYS SER VAL GLU CYS HIS TYR LYS GLY GLN SEQRES 6 A 253 LYS PHE LEU CYS VAL SER HIS GLY VAL GLY SER ALA GLY SEQRES 7 A 253 CYS ALA VAL CYS PHE GLU GLU LEU CYS GLN ASN GLY ALA SEQRES 8 A 253 LYS VAL ILE ILE ARG ALA GLY SER CYS GLY SER LEU GLN SEQRES 9 A 253 PRO ASP LEU ILE LYS ARG GLY ASP ILE CYS ILE CYS ASN SEQRES 10 A 253 ALA ALA VAL ARG GLU ASP ARG VAL SER HIS LEU LEU ILE SEQRES 11 A 253 HIS GLY ASP PHE PRO ALA VAL GLY ASP PHE ASP VAL TYR SEQRES 12 A 253 ASP THR LEU ASN LYS CYS ALA GLN GLU LEU ASN VAL PRO SEQRES 13 A 253 VAL PHE ASN GLY ILE SER VAL SER SER ASP MSE TYR TYR SEQRES 14 A 253 PRO ASN LYS ILE ILE PRO SER ARG LEU GLU ASP TYR SER SEQRES 15 A 253 LYS ALA ASN ALA ALA VAL VAL GLU MSE GLU LEU ALA THR SEQRES 16 A 253 LEU MSE VAL ILE GLY THR LEU ARG LYS VAL LYS THR GLY SEQRES 17 A 253 GLY ILE LEU ILE VAL ASP GLY CYS PRO PHE LYS TRP ASP SEQRES 18 A 253 GLU GLY ASP PHE ASP ASN ASN LEU VAL PRO HIS GLN LEU SEQRES 19 A 253 GLU ASN MSE ILE LYS ILE ALA LEU GLY ALA CYS ALA LYS SEQRES 20 A 253 LEU ALA THR LYS TYR ALA MODRES 1SQ6 MSE A 167 MET SELENOMETHIONINE MODRES 1SQ6 MSE A 191 MET SELENOMETHIONINE MODRES 1SQ6 MSE A 197 MET SELENOMETHIONINE MODRES 1SQ6 MSE A 237 MET SELENOMETHIONINE HET MSE A 167 8 HET MSE A 191 8 HET MSE A 197 8 HET MSE A 237 8 HET SO4 A 401 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *48(H2 O) HELIX 1 1 SER A 19 ILE A 23 5 5 HELIX 2 2 ASP A 32 CYS A 43 1 12 HELIX 3 3 GLY A 75 GLN A 88 1 14 HELIX 4 4 VAL A 125 LEU A 129 5 5 HELIX 5 5 ASP A 139 LEU A 153 1 15 HELIX 6 6 ARG A 177 ALA A 184 1 8 HELIX 7 7 GLU A 192 LYS A 204 1 13 HELIX 8 8 HIS A 232 THR A 250 1 19 SHEET 1 A 9 SER A 45 ASN A 52 0 SHEET 2 A 9 TYR A 55 TYR A 62 -1 O GLU A 59 N VAL A 47 SHEET 3 A 9 GLN A 65 SER A 71 -1 O PHE A 67 N CYS A 60 SHEET 4 A 9 VAL A 26 VAL A 30 1 N LEU A 28 O LEU A 68 SHEET 5 A 9 VAL A 93 SER A 102 1 O ILE A 95 N VAL A 29 SHEET 6 A 9 VAL A 188 GLU A 190 -1 O VAL A 189 N GLY A 101 SHEET 7 A 9 VAL A 157 SER A 165 1 N VAL A 163 O VAL A 188 SHEET 8 A 9 ILE A 113 GLU A 122 1 N ILE A 113 O PHE A 158 SHEET 9 A 9 ALA A 136 VAL A 137 -1 O ALA A 136 N ALA A 119 SHEET 1 B 8 SER A 45 ASN A 52 0 SHEET 2 B 8 TYR A 55 TYR A 62 -1 O GLU A 59 N VAL A 47 SHEET 3 B 8 GLN A 65 SER A 71 -1 O PHE A 67 N CYS A 60 SHEET 4 B 8 VAL A 26 VAL A 30 1 N LEU A 28 O LEU A 68 SHEET 5 B 8 VAL A 93 SER A 102 1 O ILE A 95 N VAL A 29 SHEET 6 B 8 LYS A 206 GLY A 215 1 O ILE A 210 N ARG A 96 SHEET 7 B 8 ILE A 113 GLU A 122 -1 N CYS A 114 O LEU A 211 SHEET 8 B 8 ALA A 136 VAL A 137 -1 O ALA A 136 N ALA A 119 LINK C ASP A 166 N MSE A 167 1555 1555 1.32 LINK C MSE A 167 N TYR A 168 1555 1555 1.32 LINK C GLU A 190 N MSE A 191 1555 1555 1.33 LINK C MSE A 191 N GLU A 192 1555 1555 1.33 LINK C LEU A 196 N MSE A 197 1555 1555 1.34 LINK C MSE A 197 N VAL A 198 1555 1555 1.33 LINK C ASN A 236 N MSE A 237 1555 1555 1.33 LINK C MSE A 237 N ILE A 238 1555 1555 1.32 SITE 1 AC1 5 GLY A 31 ARG A 53 ARG A 96 GLY A 98 SITE 2 AC1 5 SER A 99 CRYST1 95.087 95.087 134.786 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010517 0.006072 0.000000 0.00000 SCALE2 0.000000 0.012144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007419 0.00000