HEADER HYDROLASE 26-MAR-04 1SU2 TITLE CRYSTAL STRUCTURE OF THE NUDIX HYDROLASE DR1025 IN COMPLEX WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUTT/NUDIX FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUDIX HYDROLASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 GENE: DR1025; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS NUDIX FOLD, ALPHA-BETA-ALPHA SANDWICH, STRUCTURAL GENOMICS, BSGC KEYWDS 2 STRUCTURE FUNDED BY NIH, PROTEIN STRUCTURE INITIATIVE, PSI, BERKELEY KEYWDS 3 STRUCTURAL GENOMICS CENTER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.RANATUNGA,E.E.HILL,J.L.MOOSTER,E.L.HOLBROOK,U.SCHULZE-GAHMEN,W.XU, AUTHOR 2 M.J.BESSMAN,S.E.BRENNER,S.R.HOLBROOK,BERKELEY STRUCTURAL GENOMICS AUTHOR 3 CENTER (BSGC) REVDAT 5 14-FEB-24 1SU2 1 REMARK LINK REVDAT 4 24-FEB-09 1SU2 1 VERSN REVDAT 3 08-MAR-05 1SU2 1 AUTHOR KEYWDS REMARK REVDAT 2 24-AUG-04 1SU2 1 KEYWDS REVDAT 1 11-MAY-04 1SU2 0 JRNL AUTH W.RANATUNGA,E.E.HILL,J.L.MOOSTER,E.L.HOLBROOK, JRNL AUTH 2 U.SCHULZE-GAHMEN,W.XU,M.J.BESSMAN,S.E.BRENNER,S.R.HOLBROOK JRNL TITL STRUCTURAL STUDIES OF THE NUDIX HYDROLASE DR1025 FROM JRNL TITL 2 DEINOCOCCUS RADIODURANS AND ITS LIGAND COMPLEXES. JRNL REF J.MOL.BIOL. V. 339 103 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15123424 JRNL DOI 10.1016/J.JMB.2004.01.065 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1734.300 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 44109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4454 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3857 REMARK 3 BIN R VALUE (WORKING SET) : 0.2025 REMARK 3 BIN FREE R VALUE : 0.2328 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 440 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2482 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 296 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.91000 REMARK 3 B22 (A**2) : -0.91000 REMARK 3 B33 (A**2) : 1.81900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.03 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.06 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.997 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.06 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.505 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.418 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.356 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 2.091 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.001 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.42 REMARK 3 BSOL : 50.80 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SU2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000021990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.50 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44109 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : 0.04300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 45.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.17000 REMARK 200 R SYM FOR SHELL (I) : 0.17000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, SODIUM FORMATE, PH REMARK 280 4.50, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.18100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.59050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.77150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT OF THE CRYSTAL STRUCTURE AND THE BIOLOGICAL REMARK 300 UNIT IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 36 CA - N - CD ANGL. DEV. = -11.6 DEGREES REMARK 500 PRO A 39 CA - N - CD ANGL. DEV. = -15.3 DEGREES REMARK 500 PRO A 48 CA - N - CD ANGL. DEV. = -11.0 DEGREES REMARK 500 PRO A 58 CA - N - CD ANGL. DEV. = -11.8 DEGREES REMARK 500 PRO A 155 C - N - CD ANGL. DEV. = -14.1 DEGREES REMARK 500 PRO A 155 CA - N - CD ANGL. DEV. = -9.6 DEGREES REMARK 500 LEU A 157 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 PRO A 158 C - N - CD ANGL. DEV. = -16.4 DEGREES REMARK 500 PRO A 158 CA - N - CD ANGL. DEV. = -15.1 DEGREES REMARK 500 PRO B 36 CA - N - CD ANGL. DEV. = -10.6 DEGREES REMARK 500 PRO B 39 CA - N - CD ANGL. DEV. = -10.4 DEGREES REMARK 500 PRO B 158 C - N - CD ANGL. DEV. = -12.7 DEGREES REMARK 500 PRO B 158 CA - N - CD ANGL. DEV. = -18.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 2 150.99 153.49 REMARK 500 PRO A 39 82.34 -36.42 REMARK 500 GLU A 40 116.84 165.78 REMARK 500 PRO A 48 101.98 -58.08 REMARK 500 GLU A 118 -177.97 -178.73 REMARK 500 PRO A 158 3.49 -65.62 REMARK 500 GLU B 2 152.51 46.26 REMARK 500 HIS B 3 54.91 -64.90 REMARK 500 PRO B 36 77.08 -52.03 REMARK 500 HIS B 38 -140.60 -61.18 REMARK 500 PRO B 39 -156.52 -35.92 REMARK 500 LYS B 41 -103.48 1.18 REMARK 500 ALA B 42 78.30 95.51 REMARK 500 GLU B 118 -178.51 -177.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 14 0.28 SIDE CHAIN REMARK 500 ARG A 75 0.21 SIDE CHAIN REMARK 500 ARG A 124 0.14 SIDE CHAIN REMARK 500 ARG B 14 0.20 SIDE CHAIN REMARK 500 ARG B 73 0.25 SIDE CHAIN REMARK 500 ARG B 75 0.25 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 1 N REMARK 620 2 SER B 49 OG 104.2 REMARK 620 3 ARG B 95 NH1 55.8 81.7 REMARK 620 4 ATP B 257 O1B 142.8 111.5 118.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 204 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 49 OG REMARK 620 2 ARG A 95 NH1 77.9 REMARK 620 3 ATP A 357 O1B 113.6 79.6 REMARK 620 4 ATP A 357 O2B 175.5 99.1 68.8 REMARK 620 5 MET B 1 SD 105.3 129.2 136.2 73.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 205 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 65 OE2 REMARK 620 2 HOH A 771 O 99.1 REMARK 620 3 HOH A 816 O 81.4 101.6 REMARK 620 4 HOH A 827 O 75.4 86.7 156.3 REMARK 620 5 HOH A 889 O 83.0 168.6 89.7 83.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 357 O2A REMARK 620 2 HOH A 720 O 160.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 206 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 65 OE2 REMARK 620 2 HOH B 764 O 99.2 REMARK 620 3 HOH B 782 O 161.7 95.5 REMARK 620 4 HOH B 853 O 77.7 102.9 88.6 REMARK 620 5 HOH B 871 O 77.7 84.4 114.7 155.1 REMARK 620 6 HOH B 980 O 87.6 170.8 79.1 84.5 91.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP B 257 O2A REMARK 620 2 ATP B 257 O1A 61.2 REMARK 620 3 HOH B 713 O 157.1 140.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 357 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BSGCAIR30561 RELATED DB: TARGETDB DBREF 1SU2 A 1 159 UNP Q9RVK2 Q9RVK2_DEIRA 1 159 DBREF 1SU2 B 1 159 UNP Q9RVK2 Q9RVK2_DEIRA 1 159 SEQRES 1 A 159 MET GLU HIS ASP GLU ARG THR HIS VAL PRO VAL GLU LEU SEQRES 2 A 159 ARG ALA ALA GLY VAL VAL LEU LEU ASN GLU ARG GLY ASP SEQRES 3 A 159 ILE LEU LEU VAL GLN GLU LYS GLY ILE PRO GLY HIS PRO SEQRES 4 A 159 GLU LYS ALA GLY LEU TRP HIS ILE PRO SER GLY ALA VAL SEQRES 5 A 159 GLU ASP GLY GLU ASN PRO GLN ASP ALA ALA VAL ARG GLU SEQRES 6 A 159 ALA CYS GLU GLU THR GLY LEU ARG VAL ARG PRO VAL LYS SEQRES 7 A 159 PHE LEU GLY ALA TYR LEU GLY ARG PHE PRO ASP GLY VAL SEQRES 8 A 159 LEU ILE LEU ARG HIS VAL TRP LEU ALA GLU PRO GLU PRO SEQRES 9 A 159 GLY GLN THR LEU ALA PRO ALA PHE THR ASP GLU ILE ALA SEQRES 10 A 159 GLU ALA SER PHE VAL SER ARG GLU ASP PHE ALA GLN LEU SEQRES 11 A 159 TYR ALA ALA GLY GLN ILE ARG MET TYR GLN THR LYS LEU SEQRES 12 A 159 PHE TYR ALA ASP ALA LEU ARG GLU LYS GLY PHE PRO ALA SEQRES 13 A 159 LEU PRO VAL SEQRES 1 B 159 MET GLU HIS ASP GLU ARG THR HIS VAL PRO VAL GLU LEU SEQRES 2 B 159 ARG ALA ALA GLY VAL VAL LEU LEU ASN GLU ARG GLY ASP SEQRES 3 B 159 ILE LEU LEU VAL GLN GLU LYS GLY ILE PRO GLY HIS PRO SEQRES 4 B 159 GLU LYS ALA GLY LEU TRP HIS ILE PRO SER GLY ALA VAL SEQRES 5 B 159 GLU ASP GLY GLU ASN PRO GLN ASP ALA ALA VAL ARG GLU SEQRES 6 B 159 ALA CYS GLU GLU THR GLY LEU ARG VAL ARG PRO VAL LYS SEQRES 7 B 159 PHE LEU GLY ALA TYR LEU GLY ARG PHE PRO ASP GLY VAL SEQRES 8 B 159 LEU ILE LEU ARG HIS VAL TRP LEU ALA GLU PRO GLU PRO SEQRES 9 B 159 GLY GLN THR LEU ALA PRO ALA PHE THR ASP GLU ILE ALA SEQRES 10 B 159 GLU ALA SER PHE VAL SER ARG GLU ASP PHE ALA GLN LEU SEQRES 11 B 159 TYR ALA ALA GLY GLN ILE ARG MET TYR GLN THR LYS LEU SEQRES 12 B 159 PHE TYR ALA ASP ALA LEU ARG GLU LYS GLY PHE PRO ALA SEQRES 13 B 159 LEU PRO VAL HET MG A 201 1 HET MG A 204 1 HET MG A 205 1 HET ATP A 357 31 HET MG B 202 1 HET MG B 203 1 HET MG B 206 1 HET ATP B 257 31 HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 3 MG 6(MG 2+) FORMUL 6 ATP 2(C10 H16 N5 O13 P3) FORMUL 11 HOH *296(H2 O) HELIX 1 1 ASN A 57 GLY A 71 1 15 HELIX 2 2 SER A 123 ALA A 133 1 11 HELIX 3 3 TYR A 139 GLY A 153 1 15 HELIX 4 4 ASN B 57 GLY B 71 1 15 HELIX 5 5 SER B 123 ALA B 133 1 11 HELIX 6 6 TYR B 139 GLY B 153 1 15 SHEET 1 A 5 THR A 7 HIS A 8 0 SHEET 2 A 5 VAL B 74 ARG B 86 -1 O ARG B 86 N THR A 7 SHEET 3 A 5 LEU B 92 PRO B 102 -1 O LEU B 99 N LYS B 78 SHEET 4 A 5 LEU B 13 LEU B 20 1 N VAL B 19 O TRP B 98 SHEET 5 A 5 SER B 49 ALA B 51 -1 O GLY B 50 N ALA B 16 SHEET 1 B 5 SER A 49 ALA A 51 0 SHEET 2 B 5 LEU A 13 LEU A 20 -1 N ALA A 16 O GLY A 50 SHEET 3 B 5 LEU A 92 PRO A 102 1 O TRP A 98 N VAL A 19 SHEET 4 B 5 VAL A 74 ARG A 86 -1 N LYS A 78 O LEU A 99 SHEET 5 B 5 THR B 7 HIS B 8 -1 O THR B 7 N ARG A 86 SHEET 1 C 3 TRP A 45 HIS A 46 0 SHEET 2 C 3 ILE A 27 GLU A 32 -1 N VAL A 30 O HIS A 46 SHEET 3 C 3 ILE A 116 VAL A 122 -1 O GLU A 118 N GLN A 31 SHEET 1 D 3 TRP B 45 HIS B 46 0 SHEET 2 D 3 ILE B 27 GLU B 32 -1 N VAL B 30 O HIS B 46 SHEET 3 D 3 ILE B 116 VAL B 122 -1 O GLU B 118 N GLN B 31 LINK N MET A 1 MG MG B 202 1555 1555 2.09 LINK OG SER A 49 MG MG A 204 1555 1555 2.35 LINK OE2 GLU A 65 MG MG A 205 1555 1555 2.62 LINK NH1 ARG A 95 MG MG A 204 1555 1555 3.12 LINK MG MG A 201 O2A ATP A 357 1555 1555 1.91 LINK MG MG A 201 O HOH A 720 1555 4664 2.83 LINK MG MG A 204 O1B ATP A 357 1555 1555 2.38 LINK MG MG A 204 O2B ATP A 357 1555 1555 2.06 LINK MG MG A 204 SD MET B 1 1555 1555 2.90 LINK MG MG A 205 O HOH A 771 1555 1555 2.49 LINK MG MG A 205 O HOH A 816 1555 1555 2.44 LINK MG MG A 205 O HOH A 827 1555 1555 2.65 LINK MG MG A 205 O HOH A 889 1555 1555 2.50 LINK OG SER B 49 MG MG B 202 1555 1555 2.69 LINK OE2 GLU B 65 MG MG B 206 1555 1555 2.58 LINK NH1 ARG B 95 MG MG B 202 1555 1555 3.11 LINK MG MG B 202 O1B ATP B 257 1555 1555 2.18 LINK MG MG B 203 O2A ATP B 257 1555 1555 1.87 LINK MG MG B 203 O1A ATP B 257 1555 1555 2.77 LINK MG MG B 203 O HOH B 713 1555 1555 2.80 LINK MG MG B 206 O HOH B 764 1555 1555 2.56 LINK MG MG B 206 O HOH B 782 1555 1555 2.70 LINK MG MG B 206 O HOH B 853 1555 1555 2.45 LINK MG MG B 206 O HOH B 871 1555 1555 2.81 LINK MG MG B 206 O HOH B 980 1555 1555 2.63 SITE 1 AC1 5 LEU A 13 ARG A 14 ALA A 51 ATP A 357 SITE 2 AC1 5 HOH A 720 SITE 1 AC2 5 MET A 1 SER B 49 GLY B 50 ARG B 95 SITE 2 AC2 5 ATP B 257 SITE 1 AC3 5 LEU B 13 ARG B 14 ALA B 51 ATP B 257 SITE 2 AC3 5 HOH B 713 SITE 1 AC4 5 SER A 49 GLY A 50 ARG A 95 ATP A 357 SITE 2 AC4 5 MET B 1 SITE 1 AC5 5 GLU A 65 HOH A 771 HOH A 816 HOH A 827 SITE 2 AC5 5 HOH A 889 SITE 1 AC6 6 GLU B 65 HOH B 764 HOH B 782 HOH B 853 SITE 2 AC6 6 HOH B 871 HOH B 980 SITE 1 AC7 15 MET A 1 GLU A 2 ASP A 4 ARG A 6 SITE 2 AC7 15 LEU B 13 ALA B 15 GLY B 50 ALA B 51 SITE 3 AC7 15 PHE B 87 ASP B 89 VAL B 91 ILE B 93 SITE 4 AC7 15 MG B 202 MG B 203 HOH B 791 SITE 1 AC8 16 LEU A 13 ALA A 15 ALA A 51 PHE A 87 SITE 2 AC8 16 ASP A 89 VAL A 91 ILE A 93 ARG A 95 SITE 3 AC8 16 MG A 201 MG A 204 HOH A 793 HOH A 996 SITE 4 AC8 16 MET B 1 GLU B 2 ASP B 4 ARG B 6 CRYST1 53.232 53.232 122.362 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018786 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008172 0.00000