HEADER OXIDOREDUCTASE 26-MAR-04 1SU9 TITLE REDUCED STRUCTURE OF THE SOLUBLE DOMAIN OF RESA COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL-DISULFIDE OXIDOREDUCTASE RESA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SOLUBLE DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: RESA, BSU23150; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRAN11 KEYWDS THIOREDOXIN-LIKE DOMAIN, ALPHA-BETA PROTEIN, SOLUBLE DOMAIN, MEMBRANE KEYWDS 2 PROTEIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CROW,R.M.ACHESON,N.E.LE BRUN,A.OUBRIE REVDAT 4 23-AUG-23 1SU9 1 REMARK REVDAT 3 24-FEB-09 1SU9 1 VERSN REVDAT 2 01-JUN-04 1SU9 1 JRNL REVDAT 1 11-MAY-04 1SU9 0 JRNL AUTH A.CROW,R.M.ACHESON,N.E.LE BRUN,A.OUBRIE JRNL TITL STRUCTURAL BASIS OF REDOX-COUPLED PROTEIN SUBSTRATE JRNL TITL 2 SELECTION BY THE CYTOCHROME C BIOSYNTHESIS PROTEIN RESA. JRNL REF J.BIOL.CHEM. V. 279 23654 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15047692 JRNL DOI 10.1074/JBC.M402823200 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 23330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2157 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 5% OF THE DATA WAS USED FOR VALIDATION REMARK 3 (IE AS AN 'RFREE') THROUGHOUT, BUT UPON COMPLETION OF THE MODEL REMARK 3 (RFREE=21.19, RWORK=18.31),AN ADDITIONAL ROUND OF REFINEMENT REMARK 3 USING ALL DATA, INCLUDING REFLECTIONS MARKED AS RFREE IN THE SF REMARK 3 FILE, WAS PERFORMED TO GIVE A FINAL CRYSTALLOGRAPHIC RFACTOR REMARK 3 (RCRYST=18.09). REMARK 4 REMARK 4 1SU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000021997. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23398 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 26.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 17.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.27300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: OXIDISED STRUCTURE OF RESA (PDB CODE: 1ST9) WITH REMARK 200 ALL CYSTEINES MUTATED TO ALANINE. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27-32% PEG4000, 0.2M AMMONIUM ACETATE, REMARK 280 0.1M SODIUM CITRATE PH 5.8, 40MM DTT, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.76100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.03050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.82650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.03050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.76100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.82650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER OF RESA REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 36 REMARK 465 GLU A 37 REMARK 465 GLY A 38 REMARK 465 THR A 176 REMARK 465 SER A 177 REMARK 465 GLY A 178 REMARK 465 SER B 36 REMARK 465 GLU B 37 REMARK 465 GLY B 38 REMARK 465 GLU B 175 REMARK 465 THR B 176 REMARK 465 SER B 177 REMARK 465 GLY B 178 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 137 -73.92 -116.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ST9 RELATED DB: PDB REMARK 900 OXIDISED STRUCTURE OF RESA SOLUBLE DOMAIN DBREF 1SU9 A 36 178 UNP P35160 RESA_BACSU 37 179 DBREF 1SU9 B 36 178 UNP P35160 RESA_BACSU 37 179 SEQRES 1 A 143 SER GLU GLY SER ASP ALA PRO ASN PHE VAL LEU GLU ASP SEQRES 2 A 143 THR ASN GLY LYS ARG ILE GLU LEU SER ASP LEU LYS GLY SEQRES 3 A 143 LYS GLY VAL PHE LEU ASN PHE TRP GLY THR TRP CYS GLU SEQRES 4 A 143 PRO CYS LYS LYS GLU PHE PRO TYR MET ALA ASN GLN TYR SEQRES 5 A 143 LYS HIS PHE LYS SER GLN GLY VAL GLU ILE VAL ALA VAL SEQRES 6 A 143 ASN VAL GLY GLU SER LYS ILE ALA VAL HIS ASN PHE MET SEQRES 7 A 143 LYS SER TYR GLY VAL ASN PHE PRO VAL VAL LEU ASP THR SEQRES 8 A 143 ASP ARG GLN VAL LEU ASP ALA TYR ASP VAL SER PRO LEU SEQRES 9 A 143 PRO THR THR PHE LEU ILE ASN PRO GLU GLY LYS VAL VAL SEQRES 10 A 143 LYS VAL VAL THR GLY THR MET THR GLU SER MET ILE HIS SEQRES 11 A 143 ASP TYR MET ASN LEU ILE LYS PRO GLY GLU THR SER GLY SEQRES 1 B 143 SER GLU GLY SER ASP ALA PRO ASN PHE VAL LEU GLU ASP SEQRES 2 B 143 THR ASN GLY LYS ARG ILE GLU LEU SER ASP LEU LYS GLY SEQRES 3 B 143 LYS GLY VAL PHE LEU ASN PHE TRP GLY THR TRP CYS GLU SEQRES 4 B 143 PRO CYS LYS LYS GLU PHE PRO TYR MET ALA ASN GLN TYR SEQRES 5 B 143 LYS HIS PHE LYS SER GLN GLY VAL GLU ILE VAL ALA VAL SEQRES 6 B 143 ASN VAL GLY GLU SER LYS ILE ALA VAL HIS ASN PHE MET SEQRES 7 B 143 LYS SER TYR GLY VAL ASN PHE PRO VAL VAL LEU ASP THR SEQRES 8 B 143 ASP ARG GLN VAL LEU ASP ALA TYR ASP VAL SER PRO LEU SEQRES 9 B 143 PRO THR THR PHE LEU ILE ASN PRO GLU GLY LYS VAL VAL SEQRES 10 B 143 LYS VAL VAL THR GLY THR MET THR GLU SER MET ILE HIS SEQRES 11 B 143 ASP TYR MET ASN LEU ILE LYS PRO GLY GLU THR SER GLY FORMUL 3 HOH *300(H2 O) HELIX 1 1 SER A 57 LYS A 60 5 4 HELIX 2 2 GLU A 74 LYS A 91 1 18 HELIX 3 3 SER A 105 TYR A 116 1 12 HELIX 4 4 ARG A 128 TYR A 134 1 7 HELIX 5 5 THR A 160 LYS A 172 1 13 HELIX 6 6 SER B 57 LYS B 60 5 4 HELIX 7 7 CYS B 73 LYS B 91 1 19 HELIX 8 8 SER B 105 TYR B 116 1 12 HELIX 9 9 ARG B 128 TYR B 134 1 7 HELIX 10 10 THR B 160 ILE B 171 1 12 SHEET 1 A 2 VAL A 45 GLU A 47 0 SHEET 2 A 2 ARG A 53 GLU A 55 -1 O ILE A 54 N LEU A 46 SHEET 1 B 5 VAL A 122 ASP A 125 0 SHEET 2 B 5 VAL A 95 VAL A 102 1 N ASN A 101 O VAL A 123 SHEET 3 B 5 GLY A 63 TRP A 69 1 N GLY A 63 O GLU A 96 SHEET 4 B 5 THR A 141 ILE A 145 -1 O PHE A 143 N LEU A 66 SHEET 5 B 5 VAL A 151 THR A 156 -1 O VAL A 152 N LEU A 144 SHEET 1 C 2 VAL B 45 GLU B 47 0 SHEET 2 C 2 ARG B 53 GLU B 55 -1 O ILE B 54 N LEU B 46 SHEET 1 D 5 VAL B 122 LEU B 124 0 SHEET 2 D 5 VAL B 95 ASN B 101 1 N ASN B 101 O VAL B 123 SHEET 3 D 5 GLY B 63 TRP B 69 1 N GLY B 63 O GLU B 96 SHEET 4 D 5 THR B 141 ILE B 145 -1 O PHE B 143 N LEU B 66 SHEET 5 D 5 VAL B 151 VAL B 155 -1 O VAL B 155 N THR B 142 CISPEP 1 LEU A 139 PRO A 140 0 0.04 CISPEP 2 LEU B 139 PRO B 140 0 0.09 CRYST1 47.522 59.653 110.061 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021043 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016764 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009086 0.00000