HEADER TRANSCRIPTION, SIGNALING PROTEIN 30-MAR-04 1SXD TITLE SOLUTION STRUCTURE OF THE POINTED (PNT) DOMAIN FROM MGABPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GA REPEAT BINDING PROTEIN, ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PNT DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: GABPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS ALPHA HELICAL, TRANSCRIPTION, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 14 AUTHOR C.D.MACKERETH,M.SCHAERPF,L.N.GENTILE,S.E.MACINTOSH,C.M.SLUPSKY, AUTHOR 2 L.P.MCINTOSH REVDAT 3 02-MAR-22 1SXD 1 REMARK SEQADV REVDAT 2 24-FEB-09 1SXD 1 VERSN REVDAT 1 21-SEP-04 1SXD 0 JRNL AUTH C.D.MACKERETH,M.SCHAERPF,L.N.GENTILE,S.E.MACINTOSH, JRNL AUTH 2 C.M.SLUPSKY,L.P.MCINTOSH JRNL TITL DIVERSITY IN STRUCTURE AND FUNCTION OF THE ETS FAMILY PNT JRNL TITL 2 DOMAINS. JRNL REF J.MOL.BIOL. V. 342 1249 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15351649 JRNL DOI 10.1016/J.JMB.2004.07.094 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 2000, ARIA 1.2 REMARK 3 AUTHORS : ACCELRYS INC (FELIX), J.LINGE, S.O'DONOGHUE, REMARK 3 M.NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1SXD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000022064. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 303; 303 REMARK 210 PH : 7.2; 7.2; 7.2 REMARK 210 IONIC STRENGTH : 40 MM; 40 MM; 40 MM REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM GABPA U-15N,13C, 20MM REMARK 210 PHOSPHATE BUFFER PH 7.2, 20MM REMARK 210 NACL, 2MM DTT, 90% H2O, 10% D2O; REMARK 210 1MM GABPA 100%15N,10%13C, 20MM REMARK 210 PHOSPHATE BUFFER PH 7.2 20MM REMARK 210 NACL, 2MM DTT, 90% H2O, 10% D2O; REMARK 210 2MM GABPA 100%15N, 20MM REMARK 210 PHOSPHATE BUFFER PH 7.2 20MM REMARK 210 NACL, 2MM DTT, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3, ARIA 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 14 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD2 PHE A 230 HD1 PHE A 231 1.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 8 TYR A 184 CE1 TYR A 184 CZ 0.124 REMARK 500 8 TYR A 184 CZ TYR A 184 CE2 -0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 208 -47.02 72.12 REMARK 500 1 ASP A 209 54.44 -103.86 REMARK 500 1 ASP A 211 106.93 -56.85 REMARK 500 1 VAL A 234 99.94 -174.39 REMARK 500 1 TYR A 250 42.80 -101.87 REMARK 500 1 ALA A 253 120.10 62.74 REMARK 500 2 THR A 208 93.92 -50.37 REMARK 500 2 ASP A 209 -25.53 169.20 REMARK 500 2 ASP A 211 96.54 -55.21 REMARK 500 2 VAL A 234 98.22 -175.31 REMARK 500 2 ARG A 236 34.46 -95.14 REMARK 500 2 ALA A 253 84.56 56.35 REMARK 500 3 SER A 165 103.01 -54.65 REMARK 500 3 HIS A 166 -7.88 68.87 REMARK 500 3 THR A 208 70.15 -61.22 REMARK 500 3 ASP A 209 27.55 -172.72 REMARK 500 3 VAL A 234 93.40 -174.54 REMARK 500 3 ARG A 236 31.17 -93.78 REMARK 500 4 SER A 165 103.01 -54.65 REMARK 500 4 HIS A 166 -7.88 68.87 REMARK 500 4 THR A 208 70.15 -61.22 REMARK 500 4 ASP A 209 27.55 -172.72 REMARK 500 4 VAL A 234 93.40 -174.54 REMARK 500 4 ARG A 236 31.17 -93.78 REMARK 500 5 SER A 165 103.01 -54.65 REMARK 500 5 HIS A 166 -7.88 68.87 REMARK 500 5 THR A 208 70.15 -61.22 REMARK 500 5 ASP A 209 27.55 -172.72 REMARK 500 5 VAL A 234 93.40 -174.54 REMARK 500 5 ARG A 236 31.17 -93.78 REMARK 500 6 SER A 165 103.01 -54.65 REMARK 500 6 HIS A 166 -7.88 68.87 REMARK 500 6 THR A 208 70.15 -61.22 REMARK 500 6 ASP A 209 27.55 -172.72 REMARK 500 6 VAL A 234 93.40 -174.54 REMARK 500 6 ARG A 236 31.17 -93.78 REMARK 500 7 SER A 165 103.01 -54.65 REMARK 500 7 HIS A 166 -7.88 68.87 REMARK 500 7 THR A 208 70.15 -61.22 REMARK 500 7 ASP A 209 27.55 -172.72 REMARK 500 7 VAL A 234 93.40 -174.54 REMARK 500 7 ARG A 236 31.17 -93.78 REMARK 500 8 SER A 165 56.89 -92.73 REMARK 500 8 THR A 208 -19.23 176.66 REMARK 500 8 VAL A 234 100.02 -175.88 REMARK 500 8 ARG A 236 31.85 -89.66 REMARK 500 8 ALA A 253 74.05 51.04 REMARK 500 9 ASP A 209 -43.34 -138.01 REMARK 500 9 VAL A 234 96.92 -177.72 REMARK 500 9 ARG A 236 31.55 -87.71 REMARK 500 REMARK 500 THIS ENTRY HAS 86 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 8 TYR A 184 0.09 SIDE CHAIN REMARK 500 11 TYR A 184 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1SXD A 168 254 UNP Q00422 GABPA_MOUSE 168 254 SEQADV 1SXD GLY A 164 UNP Q00422 CLONING ARTIFACT SEQADV 1SXD SER A 165 UNP Q00422 CLONING ARTIFACT SEQADV 1SXD HIS A 166 UNP Q00422 CLONING ARTIFACT SEQADV 1SXD MET A 167 UNP Q00422 CLONING ARTIFACT SEQRES 1 A 91 GLY SER HIS MET ALA ALA LEU GLU GLY TYR ARG LYS GLU SEQRES 2 A 91 GLN GLU ARG LEU GLY ILE PRO TYR ASP PRO ILE HIS TRP SEQRES 3 A 91 SER THR ASP GLN VAL LEU HIS TRP VAL VAL TRP VAL MET SEQRES 4 A 91 LYS GLU PHE SER MET THR ASP ILE ASP LEU THR THR LEU SEQRES 5 A 91 ASN ILE SER GLY ARG GLU LEU CYS SER LEU ASN GLN GLU SEQRES 6 A 91 ASP PHE PHE GLN ARG VAL PRO ARG GLY GLU ILE LEU TRP SEQRES 7 A 91 SER HIS LEU GLU LEU LEU ARG LYS TYR VAL LEU ALA SER HELIX 1 1 HIS A 166 GLU A 178 1 13 HELIX 2 2 ASP A 185 TRP A 189 5 5 HELIX 3 3 SER A 190 PHE A 205 1 16 HELIX 4 4 LEU A 212 ASN A 216 5 5 HELIX 5 5 SER A 218 LEU A 225 1 8 HELIX 6 6 ASN A 226 VAL A 234 1 9 HELIX 7 7 GLY A 237 TYR A 250 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1