HEADER TRANSFERASE/ANTIBODY/DNA 07-APR-04 1T03 TITLE HIV-1 REVERSE TRANSCRIPTASE CROSSLINKED TO TENOFOVIR TERMINATED TITLE 2 TEMPLATE-PRIMER (COMPLEX P) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNTHETIC OLIGONUCLEOTIDE TEMPLATE; COMPND 3 CHAIN: T; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SYNTHETIC OLIGONUCLEOTIDE PRIMER; COMPND 7 CHAIN: P; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: POL POLYPROTEIN; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: REVERSE TRANSCRIPTASE, P66 SUBUNIT; COMPND 13 EC: 2.7.7.49; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: POL POLYPROTEIN; COMPND 18 CHAIN: B; COMPND 19 FRAGMENT: REVERSE TRANSCRIPTASE, P51 SUBUNIT; COMPND 20 EC: 2.7.7.49; COMPND 21 ENGINEERED: YES; COMPND 22 MUTATION: YES; COMPND 23 MOL_ID: 5; COMPND 24 MOLECULE: MONOCLONAL ANTIBODY LIGHT CHAIN; COMPND 25 CHAIN: L; COMPND 26 FRAGMENT: FAB LIGHT CHAIN DOMAIN; COMPND 27 MOL_ID: 6; COMPND 28 MOLECULE: MONOCLONAL ANTIBODY HEAVY CHAIN; COMPND 29 CHAIN: H; COMPND 30 FRAGMENT: FAB HEAVY CHAIN DOMAIN SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 7 ORGANISM_TAXID: 11676; SOURCE 8 GENE: POL; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 4; SOURCE 12 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 13 ORGANISM_TAXID: 11676; SOURCE 14 GENE: POL; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 MOL_ID: 5; SOURCE 18 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 19 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 20 ORGANISM_TAXID: 10090; SOURCE 21 MOL_ID: 6; SOURCE 22 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 23 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 24 ORGANISM_TAXID: 10090 KEYWDS HIV-1 RT, TENOFOVIR, RT-DNA COMPLEX, TRANSFERASE-ANTIBODY-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.TUSKE,S.G.SARAFIANOS,J.DING,E.ARNOLD REVDAT 5 13-NOV-24 1T03 1 REMARK REVDAT 4 23-AUG-23 1T03 1 REMARK REVDAT 3 27-OCT-21 1T03 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1T03 1 VERSN REVDAT 1 11-MAY-04 1T03 0 JRNL AUTH S.TUSKE,S.G.SARAFIANOS,A.D.CLARK JR.,J.DING,L.K.NAEGER, JRNL AUTH 2 K.L.WHITE,M.D.MILLER,C.S.GIBBS,P.L.BOYER,P.CLARK,G.WANG, JRNL AUTH 3 B.L.GAFFNEY,R.A.JONES,D.M.JERINA,S.H.HUGHES,E.ARNOLD JRNL TITL STRUCTURE OF HIV-1 RT-DNA COMPLEXES BEFORE AND AFTER JRNL TITL 2 INCORPORATION OF THE ANTI-AIDS DRUG TENOFOVIR JRNL REF NAT.STRUCT.MOL.BIOL. V. 11 469 2004 JRNL REFN ISSN 1545-9993 JRNL PMID 15107837 JRNL DOI 10.1038/NSMB760 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.100 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 59819 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2417 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.12 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4100 REMARK 3 BIN FREE R VALUE : 0.4400 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 26 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 11344 REMARK 3 NUCLEIC ACID ATOMS : 873 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM SIGMAA (A) : 0.99 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.51 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.98 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.540 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1T03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000022144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 108 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : BENDING MAGNET REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63979 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.38800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1N5Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM CACODYLATE, 33% AMMONIUM REMARK 280 SULFATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -Y,-X,-Z+1/3 REMARK 290 5555 -X+Y,Y,-Z+2/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 147.42000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.71000 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 73.71000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 147.42000 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, P, A, B, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DA T 701 REMARK 465 DT T 702 REMARK 465 DT T 726 REMARK 465 DG T 727 REMARK 465 DA P 802 REMARK 465 GLY B 430 REMARK 465 GLY B 431 REMARK 465 HIS B 432 REMARK 465 HIS B 433 REMARK 465 HIS B 434 REMARK 465 HIS B 435 REMARK 465 HIS B 436 REMARK 465 HIS B 437 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DG T 703 P OP1 OP2 REMARK 470 DC P 803 P OP1 OP2 REMARK 470 MRG P 817 C21 C22 C23 S24 REMARK 470 ARG A 211 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 238 CG CD CE NZ REMARK 470 ARG A 284 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 LEU A 301 CG CD1 CD2 REMARK 470 GLU A 302 CG CD OE1 OE2 REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 LYS A 424 CG CD CE NZ REMARK 470 GLN A 524 CG CD OE1 NE2 REMARK 470 LYS A 540 CG CD CE NZ REMARK 470 ARG A 557 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 558 CG CD CE NZ REMARK 470 LYS B 281 CG CD CE NZ REMARK 470 GLU B 297 CG CD OE1 OE2 REMARK 470 GLU B 298 CG CD OE1 OE2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ARG A 557 REMARK 475 LYS A 558 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 336 CG CD OE1 NE2 REMARK 480 LEU B 425 CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 478 OD1 ASP A 498 1.99 REMARK 500 O THR A 473 N LYS A 476 2.18 REMARK 500 OE1 GLU A 478 OD2 ASP A 498 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ILE B 2 O ILE B 2 6565 1.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA T 705 C3' DA T 705 C2' -0.077 REMARK 500 DC P 821 C2' DC P 821 C1' 0.066 REMARK 500 GLU A 248 CD GLU A 248 OE2 0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA T 705 N9 - C1' - C2' ANGL. DEV. = -13.9 DEGREES REMARK 500 DT T 706 O3' - P - OP2 ANGL. DEV. = -13.8 DEGREES REMARK 500 DT T 706 O3' - P - OP1 ANGL. DEV. = -19.1 DEGREES REMARK 500 DT T 706 O5' - P - OP1 ANGL. DEV. = 10.6 DEGREES REMARK 500 DC T 712 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG P 815 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG P 816 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC P 821 O4' - C4' - C3' ANGL. DEV. = -2.5 DEGREES REMARK 500 DC P 821 N1 - C1' - C2' ANGL. DEV. = -13.9 DEGREES REMARK 500 DC P 821 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 PRO B 225 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 TYR B 427 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 66 -28.76 -36.74 REMARK 500 ASP A 67 -97.08 -61.76 REMARK 500 GLN A 85 156.07 -40.96 REMARK 500 LYS A 104 -71.51 -55.78 REMARK 500 ALA A 114 -75.93 -41.14 REMARK 500 PHE A 116 7.71 -58.08 REMARK 500 ASP A 121 123.27 -37.91 REMARK 500 ASP A 123 12.08 -64.25 REMARK 500 PRO A 133 146.74 -37.61 REMARK 500 ASN A 136 -155.26 -133.64 REMARK 500 GLU A 138 -161.33 -58.32 REMARK 500 PRO A 140 162.66 -42.79 REMARK 500 LEU A 149 104.22 -47.64 REMARK 500 PRO A 176 -1.55 -54.11 REMARK 500 MET A 184 -125.35 61.77 REMARK 500 ASP A 185 44.94 -105.04 REMARK 500 ASP A 192 41.61 -91.90 REMARK 500 ILE A 195 -11.56 -48.06 REMARK 500 THR A 216 79.61 -108.13 REMARK 500 PRO A 217 167.30 -48.26 REMARK 500 ASP A 218 44.23 -84.89 REMARK 500 TYR A 232 -165.01 -119.79 REMARK 500 PRO A 243 138.84 -30.97 REMARK 500 LYS A 249 164.27 -47.43 REMARK 500 GLN A 278 -74.56 -54.43 REMARK 500 LYS A 281 -1.77 -54.15 REMARK 500 ARG A 284 164.41 -41.69 REMARK 500 THR A 286 92.20 -61.88 REMARK 500 ALA A 288 -133.89 -97.33 REMARK 500 LEU A 289 -23.84 -151.26 REMARK 500 VAL A 314 -157.32 -131.35 REMARK 500 ASP A 324 169.96 -46.17 REMARK 500 GLN A 332 -135.74 -127.23 REMARK 500 ALA A 355 -31.80 -134.97 REMARK 500 ALA A 360 -63.90 -103.84 REMARK 500 ASN A 363 -135.71 -142.85 REMARK 500 THR A 376 -77.65 -51.74 REMARK 500 ILE A 393 130.24 -170.92 REMARK 500 GLU A 399 -32.28 -37.90 REMARK 500 TRP A 401 -71.08 -48.86 REMARK 500 GLU A 413 125.20 -34.24 REMARK 500 THR A 419 86.96 -170.12 REMARK 500 GLN A 428 113.55 -172.68 REMARK 500 THR A 439 75.87 -100.24 REMARK 500 ASP A 443 -169.10 -178.34 REMARK 500 ALA A 455 119.63 -171.19 REMARK 500 VAL A 458 75.01 -162.93 REMARK 500 THR A 459 170.25 -47.01 REMARK 500 ARG A 463 155.02 -41.53 REMARK 500 LYS A 465 155.09 161.91 REMARK 500 REMARK 500 THIS ENTRY HAS 166 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 188 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 559 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1N5Y RELATED DB: PDB REMARK 900 HIV-1 REVERSE TRANSCRIPTASE CROSSLINKED TO POST-TRANSLOCATION AZTMP- REMARK 900 TERMINATED DNA (COMPLEX P) REMARK 900 RELATED ID: 1N6Q RELATED DB: PDB REMARK 900 HIV-1 REVERSE TRANSCRIPTASE CROSSLINKED TO PRE-TRANSLOCATION AZTMP- REMARK 900 TERMINATED DNA (COMPLEX N) REMARK 900 RELATED ID: 2HMI RELATED DB: PDB REMARK 900 HIV-1 REVERSE TRANSCRIPTASE COMPLEXED WITH A DOUBLE-STRANDED DNA REMARK 900 AND FAB28 REMARK 900 RELATED ID: 1T05 RELATED DB: PDB REMARK 900 HIV-1 REVERSE TRANSCRIPTASE CROSSLINKED TO TEMPLATE-PRIMER WITH REMARK 900 TENOFOVIR-DIPHOSPHATE BOUND AS THE INCOMING NUCLEOTIDE SUBSTRATE REMARK 999 REMARK 999 SEQUENCE THE SEQUENCE OF THE FAB HEAVY AND LIGHT CHAINS ARE NOT REMARK 999 AVAILABLE IN ANY OF THE DATABASE SEQUENCE. RESIDUE MRG 817 OF REMARK 999 THE P CHAIN IS CROSSLINKED TO CHAIN A RESIDUE C258. DBREF 1T03 A 1 558 UNP P03366 POL_HV1B1 168 725 DBREF 1T03 B 1 429 UNP P03366 POL_HV1B1 168 596 DBREF 1T03 T 701 727 PDB 1T03 1T03 701 727 DBREF 1T03 P 802 822 PDB 1T03 1T03 802 822 DBREF 1T03 L 1 211 PDB 1T03 1T03 1 211 DBREF 1T03 H 1 225 PDB 1T03 1T03 1 225 SEQADV 1T03 CYS A 258 UNP P03366 GLN 425 ENGINEERED MUTATION SEQADV 1T03 SER A 280 UNP P03366 CYS 447 ENGINEERED MUTATION SEQADV 1T03 SER B 280 UNP P03366 CYS 447 ENGINEERED MUTATION SEQADV 1T03 GLY B 430 UNP P03366 CLONING ARTIFACT SEQADV 1T03 GLY B 431 UNP P03366 CLONING ARTIFACT SEQADV 1T03 HIS B 432 UNP P03366 EXPRESSION TAG SEQADV 1T03 HIS B 433 UNP P03366 EXPRESSION TAG SEQADV 1T03 HIS B 434 UNP P03366 EXPRESSION TAG SEQADV 1T03 HIS B 435 UNP P03366 EXPRESSION TAG SEQADV 1T03 HIS B 436 UNP P03366 EXPRESSION TAG SEQADV 1T03 HIS B 437 UNP P03366 EXPRESSION TAG SEQRES 1 T 27 DA DT DG DC DA DT DG DG DC DG DC DC DC SEQRES 2 T 27 DG DA DA DC DA DG DG DG DA DC DT DG DT SEQRES 3 T 27 DG SEQRES 1 P 21 DA DC DA DG DT DC DC DC DT DG DT DT DC SEQRES 2 P 21 DG DG MRG DC DG DC DC TFO SEQRES 1 A 558 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 A 558 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 A 558 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 A 558 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 A 558 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 A 558 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 A 558 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 A 558 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 A 558 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 A 558 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 A 558 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 A 558 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 A 558 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 A 558 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 A 558 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 A 558 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 A 558 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 A 558 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 A 558 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 A 558 GLU LYS ASP SER TRP THR VAL ASN ASP ILE CYS LYS LEU SEQRES 21 A 558 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 A 558 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 A 558 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 A 558 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 A 558 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 A 558 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 A 558 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 A 558 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 A 558 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 A 558 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 A 558 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 A 558 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 A 558 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN LEU SEQRES 34 A 558 GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE TYR VAL SEQRES 35 A 558 ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY LYS ALA SEQRES 36 A 558 GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL VAL PRO SEQRES 37 A 558 LEU THR ASN THR THR ASN GLN LYS THR GLU LEU GLN ALA SEQRES 38 A 558 ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU VAL ASN SEQRES 39 A 558 ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE ILE GLN SEQRES 40 A 558 ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL ASN GLN SEQRES 41 A 558 ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL TYR LEU SEQRES 42 A 558 ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY ASN GLU SEQRES 43 A 558 GLN VAL ASP LYS LEU VAL SER ALA GLY ILE ARG LYS SEQRES 1 B 437 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 B 437 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 B 437 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 B 437 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 B 437 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 B 437 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 B 437 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 B 437 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 B 437 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 B 437 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 B 437 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 B 437 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 B 437 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 B 437 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 B 437 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 B 437 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 B 437 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 B 437 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 B 437 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 B 437 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 B 437 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 B 437 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 B 437 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 B 437 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 B 437 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 B 437 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 B 437 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 B 437 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 B 437 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 B 437 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 B 437 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 B 437 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 B 437 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN LEU SEQRES 34 B 437 GLY GLY HIS HIS HIS HIS HIS HIS SEQRES 1 L 211 ASP ILE GLN MET THR GLN THR THR SER SER LEU SER ALA SEQRES 2 L 211 SER LEU GLY ASP ARG VAL THR ILE SER CYS SER ALA SER SEQRES 3 L 211 GLN ASP ILE SER SER TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 L 211 PRO GLU GLY THR VAL LYS LEU LEU ILE TYR TYR THR SER SEQRES 5 L 211 SER LEU HIS SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 211 GLY SER GLY THR ASP TYR SER LEU THR ILE SER ASN LEU SEQRES 7 L 211 GLU PRO GLU ASP ILE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 L 211 SER LYS PHE PRO TRP THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 211 GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 L 211 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 L 211 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 L 211 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 L 211 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 L 211 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 L 211 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 L 211 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 L 211 PHE ASN ARG SEQRES 1 H 225 GLN ILE THR LEU LYS GLU SER GLY PRO GLY ILE VAL GLN SEQRES 2 H 225 PRO SER GLN PRO PHE ARG LEU THR CYS THR PHE SER GLY SEQRES 3 H 225 PHE SER LEU SER THR SER GLY ILE GLY VAL THR TRP ILE SEQRES 4 H 225 ARG GLN PRO SER GLY LYS GLY LEU GLU TRP LEU ALA THR SEQRES 5 H 225 ILE TRP TRP ASP ASP ASP ASN ARG TYR ASN PRO SER LEU SEQRES 6 H 225 LYS SER ARG LEU THR VAL SER LYS ASP THR SER ASN ASN SEQRES 7 H 225 GLN ALA PHE LEU ASN MET MET THR VAL GLU THR ALA ASP SEQRES 8 H 225 THR ALA ILE TYR TYR CYS ALA GLN SER ALA ILE THR SER SEQRES 9 H 225 VAL THR ASP SER ALA MET ASP HIS TRP GLY GLN GLY THR SEQRES 10 H 225 SER VAL THR VAL SER SER ALA LYS THR THR PRO PRO SER SEQRES 11 H 225 VAL TYR PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SEQRES 12 H 225 SER MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE SEQRES 13 H 225 PRO GLU PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SEQRES 14 H 225 SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 225 ASP LEU TYR THR LEU SER SER SER VAL THR VAL PRO SER SEQRES 16 H 225 SER THR TRP PRO SER GLU THR VAL THR CYS ASN VAL ALA SEQRES 17 H 225 HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL SEQRES 18 H 225 PRO ALA ASP CYS MODRES 1T03 MRG P 817 DG MODRES 1T03 TFO P 822 DA HET MRG P 817 22 HET TFO P 822 36 HET MG A 559 1 HETNAM MRG N2-(3-MERCAPTOPROPYL)-2'-DEOXYGUANOSINE-5'- HETNAM 2 MRG MONOPHOSPHATE HETNAM TFO [2-(6-AMINO-9H-PURIN-9-YL)-1- HETNAM 2 TFO METHYLETHOXY]METHYLPHOSPHONIC ACID HETNAM MG MAGNESIUM ION HETSYN TFO TENOFOVIR FORMUL 2 MRG C13 H20 N5 O7 P S FORMUL 2 TFO C9 H14 N5 O4 P FORMUL 7 MG MG 2+ HELIX 1 1 THR A 27 GLU A 44 1 18 HELIX 2 2 PHE A 77 THR A 84 1 8 HELIX 3 3 HIS A 96 LEU A 100 5 5 HELIX 4 4 ALA A 114 VAL A 118 5 5 HELIX 5 5 ASP A 121 ALA A 129 5 9 HELIX 6 6 GLY A 155 ASN A 175 1 21 HELIX 7 7 GLU A 194 TRP A 212 1 19 HELIX 8 8 THR A 253 GLN A 269 1 17 HELIX 9 9 VAL A 276 LYS A 281 1 6 HELIX 10 10 THR A 296 GLU A 312 1 17 HELIX 11 11 ASP A 364 GLY A 384 1 21 HELIX 12 12 GLN A 394 TYR A 405 1 12 HELIX 13 13 ASN A 474 ALA A 485 1 12 HELIX 14 14 SER A 499 ALA A 508 1 10 HELIX 15 15 SER A 515 LYS A 528 1 14 HELIX 16 16 GLY A 544 SER A 553 1 10 HELIX 17 17 THR B 27 GLU B 44 1 18 HELIX 18 18 PHE B 77 THR B 84 1 8 HELIX 19 19 GLN B 85 VAL B 90 1 6 HELIX 20 20 PRO B 97 LYS B 103 5 7 HELIX 21 21 GLY B 112 PHE B 116 5 5 HELIX 22 22 GLU B 122 ALA B 129 5 8 HELIX 23 23 SER B 134 GLU B 138 5 5 HELIX 24 24 LYS B 154 GLN B 174 1 21 HELIX 25 25 GLU B 194 ARG B 211 1 18 HELIX 26 26 PHE B 227 GLY B 231 5 5 HELIX 27 27 THR B 253 SER B 268 1 16 HELIX 28 28 VAL B 276 LYS B 281 1 6 HELIX 29 29 ALA B 299 ARG B 307 1 9 HELIX 30 30 GLU B 308 LEU B 310 5 3 HELIX 31 31 ASN B 363 TRP B 383 1 21 HELIX 32 32 GLN B 394 TRP B 402 1 9 HELIX 33 33 SER L 121 SER L 127 1 7 HELIX 34 34 LYS L 183 GLU L 187 1 5 HELIX 35 35 LEU H 65 LEU H 69 5 5 HELIX 36 36 THR H 75 ASN H 77 5 3 HELIX 37 37 GLU H 88 ASP H 91 5 4 HELIX 38 38 PRO H 210 SER H 213 5 4 SHEET 1 A 3 ILE A 47 LYS A 49 0 SHEET 2 A 3 ILE A 142 TYR A 146 -1 O GLN A 145 N SER A 48 SHEET 3 A 3 PHE A 130 ILE A 132 -1 N PHE A 130 O TYR A 144 SHEET 1 B 2 VAL A 60 LYS A 65 0 SHEET 2 B 2 LYS A 70 VAL A 75 -1 O ARG A 72 N ILE A 63 SHEET 1 C 3 SER A 105 ASP A 110 0 SHEET 2 C 3 ASP A 186 SER A 191 -1 O VAL A 189 N THR A 107 SHEET 3 C 3 VAL A 179 TYR A 183 -1 N TYR A 181 O TYR A 188 SHEET 1 D 3 TYR A 232 LEU A 234 0 SHEET 2 D 3 LYS A 238 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 3 D 3 GLY A 316 VAL A 317 -1 O GLY A 316 N TRP A 239 SHEET 1 E 5 ASN A 348 TYR A 354 0 SHEET 2 E 5 TRP A 337 TYR A 342 -1 N ILE A 341 O LYS A 350 SHEET 3 E 5 ILE A 326 LYS A 331 -1 N ILE A 326 O TYR A 342 SHEET 4 E 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327 SHEET 5 E 5 TRP A 414 PHE A 416 1 O GLU A 415 N LEU A 391 SHEET 1 F 2 LEU A 452 LYS A 454 0 SHEET 2 F 2 PRO A 468 THR A 470 -1 O LEU A 469 N GLY A 453 SHEET 1 G 2 VAL A 493 THR A 497 0 SHEET 2 G 2 VAL A 531 TRP A 535 1 O ALA A 534 N THR A 497 SHEET 1 H 3 ILE B 47 LYS B 49 0 SHEET 2 H 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 H 3 PHE B 130 ILE B 132 -1 N PHE B 130 O TYR B 144 SHEET 1 I 2 VAL B 60 LYS B 64 0 SHEET 2 I 2 TRP B 71 VAL B 75 -1 O LEU B 74 N PHE B 61 SHEET 1 J 3 SER B 105 LEU B 109 0 SHEET 2 J 3 ASP B 186 SER B 191 -1 O VAL B 189 N THR B 107 SHEET 3 J 3 VAL B 179 TYR B 183 -1 N TYR B 181 O TYR B 188 SHEET 1 K 5 ASN B 348 GLY B 352 0 SHEET 2 K 5 GLN B 336 TYR B 342 -1 N ILE B 341 O LEU B 349 SHEET 3 K 5 ILE B 326 GLY B 333 -1 N ILE B 326 O TYR B 342 SHEET 4 K 5 LYS B 388 LEU B 391 1 O LYS B 390 N ALA B 327 SHEET 5 K 5 TRP B 414 PHE B 416 1 O GLU B 415 N LEU B 391 SHEET 1 L 6 SER L 10 ALA L 13 0 SHEET 2 L 6 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 L 6 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 L 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 L 6 VAL L 44 TYR L 49 -1 O ILE L 48 N TRP L 35 SHEET 6 L 6 SER L 53 LEU L 54 -1 O SER L 53 N TYR L 49 SHEET 1 M 4 SER L 10 ALA L 13 0 SHEET 2 M 4 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 M 4 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 M 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 N 3 VAL L 19 SER L 24 0 SHEET 2 N 3 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 3 N 3 PHE L 62 SER L 67 -1 N SER L 65 O SER L 72 SHEET 1 O 3 GLY L 129 VAL L 133 0 SHEET 2 O 3 TYR L 173 THR L 182 -1 O LEU L 181 N ALA L 130 SHEET 3 O 3 LEU L 136 PHE L 139 -1 N PHE L 139 O TYR L 173 SHEET 1 P 3 GLY L 129 VAL L 133 0 SHEET 2 P 3 TYR L 173 THR L 182 -1 O LEU L 181 N ALA L 130 SHEET 3 P 3 VAL L 159 TRP L 163 -1 N LEU L 160 O THR L 178 SHEET 1 Q 4 SER L 153 GLU L 154 0 SHEET 2 Q 4 VAL L 146 ILE L 150 -1 N ILE L 150 O SER L 153 SHEET 3 Q 4 SER L 191 ALA L 196 -1 O THR L 193 N LYS L 149 SHEET 4 Q 4 ILE L 205 ASN L 210 -1 O ILE L 205 N ALA L 196 SHEET 1 R 4 THR H 3 SER H 7 0 SHEET 2 R 4 PHE H 18 SER H 25 -1 O SER H 25 N THR H 3 SHEET 3 R 4 GLN H 79 MET H 84 -1 O ALA H 80 N CYS H 22 SHEET 4 R 4 VAL H 71 ASP H 74 -1 N SER H 72 O PHE H 81 SHEET 1 S 6 ILE H 11 VAL H 12 0 SHEET 2 S 6 THR H 117 VAL H 121 1 O THR H 120 N VAL H 12 SHEET 3 S 6 ALA H 93 ILE H 102 -1 N ALA H 93 O VAL H 119 SHEET 4 S 6 ILE H 34 PRO H 42 -1 N ILE H 39 O TYR H 96 SHEET 5 S 6 GLU H 48 TRP H 54 -1 O ILE H 53 N VAL H 36 SHEET 6 S 6 ARG H 60 TYR H 61 -1 O ARG H 60 N THR H 52 SHEET 1 T 4 ILE H 11 VAL H 12 0 SHEET 2 T 4 THR H 117 VAL H 121 1 O THR H 120 N VAL H 12 SHEET 3 T 4 ALA H 93 ILE H 102 -1 N ALA H 93 O VAL H 119 SHEET 4 T 4 SER H 108 HIS H 112 -1 O HIS H 112 N GLN H 99 SHEET 1 U 4 SER H 130 LEU H 134 0 SHEET 2 U 4 MET H 145 TYR H 155 -1 O LEU H 151 N TYR H 132 SHEET 3 U 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 152 SHEET 4 U 4 VAL H 173 THR H 175 -1 N HIS H 174 O SER H 190 SHEET 1 V 4 SER H 130 LEU H 134 0 SHEET 2 V 4 MET H 145 TYR H 155 -1 O LEU H 151 N TYR H 132 SHEET 3 V 4 TYR H 185 PRO H 194 -1 O LEU H 187 N VAL H 152 SHEET 4 V 4 VAL H 179 LEU H 180 -1 N VAL H 179 O THR H 186 SHEET 1 W 3 THR H 161 TRP H 164 0 SHEET 2 W 3 THR H 204 HIS H 209 -1 O ASN H 206 N THR H 163 SHEET 3 W 3 THR H 214 LYS H 219 -1 O VAL H 216 N VAL H 207 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.04 SSBOND 3 CYS H 22 CYS H 97 1555 1555 2.05 SSBOND 4 CYS H 150 CYS H 205 1555 1555 2.03 LINK O3' DG P 816 P MRG P 817 1555 1555 1.61 LINK O3' MRG P 817 P DC P 818 1555 1555 1.60 LINK O3'A DC P 821 P ATFO P 822 1555 1555 1.58 LINK O3'B DC P 821 P BTFO P 822 1555 1555 1.65 LINK OD2 ASP A 498 MG MG A 559 1555 1555 2.22 CISPEP 1 PRO A 225 PRO A 226 0 0.20 CISPEP 2 PRO A 420 PRO A 421 0 0.02 CISPEP 3 PHE L 94 PRO L 95 0 0.18 CISPEP 4 TYR L 140 PRO L 141 0 -0.09 CISPEP 5 PHE H 156 PRO H 157 0 0.37 CISPEP 6 GLU H 158 PRO H 159 0 -0.09 CISPEP 7 TRP H 198 PRO H 199 0 0.14 SITE 1 AC1 3 ASP A 443 GLU A 478 ASP A 498 CRYST1 166.780 166.780 221.130 90.00 90.00 120.00 P 32 1 2 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005996 0.003462 0.000000 0.00000 SCALE2 0.000000 0.006923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004522 0.00000