HEADER LIGAND BINDING PROTEIN 13-APR-04 1T0V TITLE NMR SOLUTION STRUCTURE OF THE ENGINEERED LIPOCALIN FLUA(R95K) TITLE 2 NORTHEAST STRUCTURAL GENOMICS TARGET OR17 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BILIN-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BBP; ANTICALIN FLUA; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PIERIS BRASSICAE; SOURCE 3 ORGANISM_COMMON: LARGE CABBAGE WHITE; SOURCE 4 ORGANISM_TAXID: 7116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM83; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBBP21-FLUA KEYWDS PIERIS BRASSICAE, LIPOCALIN, ANTICALIN, PROTEIN ENGINEERING, BETA- KEYWDS 2 BARREL, LIGAND BINDING PROTEIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.L.MILLS,G.LIU,A.SKERRA,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS AUTHOR 2 CONSORTIUM (NESG) REVDAT 4 02-MAR-22 1T0V 1 REMARK REVDAT 3 07-APR-10 1T0V 1 JRNL KEYWDS TITLE REVDAT 2 24-FEB-09 1T0V 1 VERSN REVDAT 1 14-JUN-05 1T0V 0 JRNL AUTH J.L.MILLS,G.LIU,A.SKERRA,T.SZYPERSKI JRNL TITL NMR STRUCTURE AND DYNAMICS OF THE ENGINEERED JRNL TITL 2 FLUORESCEIN-BINDING LIPOCALIN FLUA REVEAL RIGIDIFICATION OF JRNL TITL 3 BETA-BARREL AND VARIABLE LOOPS UPON ENTHALPY-DRIVEN LIGAND JRNL TITL 4 BINDING. JRNL REF BIOCHEMISTRY V. 48 7411 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19603796 JRNL DOI 10.1021/BI900535J REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1B, DYANA 1.5 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 2347 RESTRAINTS, 2089 ARE REMARK 3 NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS, 258 DIHEDRAL ANGLE RESTRAINTS REMARK 4 REMARK 4 1T0V COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000022172. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : 150 MM NACL; 10 MM NA-PO4; 50 MM REMARK 210 BENZAMIDINE; 0.2 MM EDTA REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7 MM FLUA(R95K) U-13C,15N 150 REMARK 210 MM NACL 10 MM NA-PO4 0.2 MM EDTA REMARK 210 50 MM BENZAMIDINE PH 6.4; 0.7 MM REMARK 210 FLUA(R95K) U-50% 2H,15N 150 MM REMARK 210 NACL 10 MM NA-PO4 0.2 MM EDTA 50 REMARK 210 MM BENZAMIDINE PH 6.4; 0.7 MM REMARK 210 FLUA(R95K) U-15N 150 MM NACL 10 REMARK 210 MM NA-PO4 0.2 MM EDTA 50 MM REMARK 210 BENZAMIDINE PH 6.4; 0.7 MM REMARK 210 FLUA(R95K) 150 MM NACL 10 MM NA- REMARK 210 PO4 0.2 MM EDTA 50 MM REMARK 210 BENZAMIDINE PH 6.4; 0.7 MM REMARK 210 FLUA(R95K) 150 MM NACL 10 MM NA- REMARK 210 PO4 0.2 MM EDTA 50 MM REMARK 210 BENZAMIDINE PH 6.4 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PROSA 6.0.2, XEASY 1.3.13, DYANA REMARK 210 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS AND REMARK 210 SIMULATED ANNEALING (DYANA) REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG CYS A 42 SG CYS A 170 0.96 REMARK 500 HG CYS A 42 HG CYS A 170 1.11 REMARK 500 HH TYR A 32 HD2 ASP A 156 1.23 REMARK 500 O THR A 143 H ASN A 147 1.49 REMARK 500 H VAL A 76 O LYS A 83 1.50 REMARK 500 H GLU A 50 O SER A 53 1.54 REMARK 500 O VAL A 90 H TYR A 93 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 7 -168.75 -112.68 REMARK 500 1 TYR A 22 84.30 -57.36 REMARK 500 1 HIS A 23 -168.95 -175.61 REMARK 500 1 VAL A 29 -88.81 -126.48 REMARK 500 1 TYR A 32 136.33 -31.92 REMARK 500 1 SER A 34 171.13 56.49 REMARK 500 1 CYS A 42 46.96 -163.03 REMARK 500 1 LYS A 52 -47.45 87.14 REMARK 500 1 HIS A 63 79.84 38.45 REMARK 500 1 LYS A 65 115.79 -167.71 REMARK 500 1 LYS A 80 -78.60 -56.23 REMARK 500 1 ILE A 81 157.46 -43.02 REMARK 500 1 LEU A 102 -88.96 -37.49 REMARK 500 1 LYS A 107 -77.02 -134.17 REMARK 500 1 ASN A 108 14.32 -140.58 REMARK 500 1 LYS A 122 -58.38 80.75 REMARK 500 1 VAL A 154 -44.22 -141.14 REMARK 500 1 VAL A 155 89.78 -54.03 REMARK 500 1 LEU A 160 172.19 -53.33 REMARK 500 1 SER A 163 145.11 -36.07 REMARK 500 1 ASP A 164 83.05 176.38 REMARK 500 1 SER A 166 148.21 71.24 REMARK 500 1 ASN A 174 80.48 44.03 REMARK 500 1 ASN A 176 83.14 40.39 REMARK 500 2 CYS A 8 156.01 -45.84 REMARK 500 2 VAL A 11 116.14 -160.74 REMARK 500 2 ASN A 16 87.19 -155.93 REMARK 500 2 TYR A 22 89.86 -56.75 REMARK 500 2 HIS A 23 -175.96 -176.29 REMARK 500 2 VAL A 29 -91.11 -132.41 REMARK 500 2 SER A 34 167.32 -43.73 REMARK 500 2 LYS A 41 57.60 -117.99 REMARK 500 2 CYS A 42 57.55 -162.58 REMARK 500 2 GLU A 50 125.16 -174.16 REMARK 500 2 LYS A 52 -39.41 88.94 REMARK 500 2 HIS A 63 66.53 38.99 REMARK 500 2 LYS A 65 125.10 -170.21 REMARK 500 2 ASP A 78 107.64 -44.70 REMARK 500 2 LYS A 80 -75.17 -54.93 REMARK 500 2 ILE A 81 157.03 -38.73 REMARK 500 2 LEU A 102 -87.14 -38.07 REMARK 500 2 ASN A 106 63.57 38.59 REMARK 500 2 LYS A 107 -69.47 -135.38 REMARK 500 2 ASN A 108 -42.17 -133.55 REMARK 500 2 LYS A 122 -60.68 78.79 REMARK 500 2 VAL A 155 103.59 -51.59 REMARK 500 2 LEU A 160 166.79 -44.65 REMARK 500 2 SER A 163 157.47 -39.44 REMARK 500 2 ASP A 164 98.59 167.51 REMARK 500 2 SER A 166 149.69 74.02 REMARK 500 REMARK 500 THIS ENTRY HAS 573 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5756 RELATED DB: BMRB REMARK 900 1H, 13C, AND 15N RESONANCE ASSIGNMENTS REMARK 900 RELATED ID: 1N0S RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF THE HOLO PROTEIN REMARK 900 RELATED ID: 1BBP RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF THE NATIVE HOLO PROTEIN REMARK 900 RELATED ID: OR17 RELATED DB: TARGETDB DBREF 1T0V A 1 174 UNP P09464 BBP_PIEBR 16 189 SEQADV 1T0V ASP A 1 UNP P09464 ASN 16 SEE REMARK 999 SEQADV 1T0V GLN A 21 UNP P09464 ASN 36 SEE REMARK 999 SEQADV 1T0V SER A 34 UNP P09464 ASN 49 SEE REMARK 999 SEQADV 1T0V PRO A 35 UNP P09464 SER 50 SEE REMARK 999 SEQADV 1T0V ASN A 36 UNP P09464 VAL 51 SEE REMARK 999 SEQADV 1T0V GLY A 37 UNP P09464 GLU 52 SEE REMARK 999 SEQADV 1T0V ARG A 58 UNP P09464 ASN 73 SEE REMARK 999 SEQADV 1T0V ASP A 60 UNP P09464 HIS 75 SEE REMARK 999 SEQADV 1T0V MET A 69 UNP P09464 ILE 84 SEE REMARK 999 SEQADV 1T0V SER A 87 UNP P09464 LYS 102 SEE REMARK 999 SEQADV 1T0V ARG A 88 UNP P09464 LEU 103 SEE REMARK 999 SEQADV 1T0V VAL A 90 UNP P09464 TYR 105 SEE REMARK 999 SEQADV 1T0V TYR A 93 UNP P09464 VAL 108 SEE REMARK 999 SEQADV 1T0V LYS A 96 UNP P09464 GLU 111 SEE REMARK 999 SEQADV 1T0V THR A 97 UNP P09464 ASN 112 SEE REMARK 999 SEQADV 1T0V SER A 114 UNP P09464 TYR 129 SEE REMARK 999 SEQADV 1T0V ARG A 116 UNP P09464 LYS 131 SEE REMARK 999 SEQADV 1T0V TRP A 125 UNP P09464 GLN 140 SEE REMARK 999 SEQADV 1T0V HIS A 127 UNP P09464 PHE 142 SEE REMARK 999 SEQADV 1T0V MET A 135 UNP P09464 LYS 150 SEE REMARK 999 SEQADV 1T0V SER A 175 UNP P09464 SEE REMARK 999 SEQADV 1T0V ASN A 176 UNP P09464 SEE REMARK 999 SEQADV 1T0V TRP A 177 UNP P09464 SEE REMARK 999 SEQADV 1T0V SER A 178 UNP P09464 SEE REMARK 999 SEQADV 1T0V HIS A 179 UNP P09464 SEE REMARK 999 SEQADV 1T0V PRO A 180 UNP P09464 SEE REMARK 999 SEQADV 1T0V GLN A 181 UNP P09464 SEE REMARK 999 SEQADV 1T0V PHE A 182 UNP P09464 SEE REMARK 999 SEQADV 1T0V GLU A 183 UNP P09464 SEE REMARK 999 SEQADV 1T0V LYS A 184 UNP P09464 SEE REMARK 999 SEQRES 1 A 184 ASP VAL TYR HIS ASP GLY ALA CYS PRO GLU VAL LYS PRO SEQRES 2 A 184 VAL ASP ASN PHE ASP TRP SER GLN TYR HIS GLY LYS TRP SEQRES 3 A 184 TRP GLU VAL ALA LYS TYR PRO SER PRO ASN GLY LYS TYR SEQRES 4 A 184 GLY LYS CYS GLY TRP ALA GLU TYR THR PRO GLU GLY LYS SEQRES 5 A 184 SER VAL LYS VAL SER ARG TYR ASP VAL ILE HIS GLY LYS SEQRES 6 A 184 GLU TYR PHE MET GLU GLY THR ALA TYR PRO VAL GLY ASP SEQRES 7 A 184 SER LYS ILE GLY LYS ILE TYR HIS SER ARG THR VAL GLY SEQRES 8 A 184 GLY TYR THR LYS LYS THR VAL PHE ASN VAL LEU SER THR SEQRES 9 A 184 ASP ASN LYS ASN TYR ILE ILE GLY TYR SER CYS ARG TYR SEQRES 10 A 184 ASP GLU ASP LYS LYS GLY HIS TRP ASP HIS VAL TRP VAL SEQRES 11 A 184 LEU SER ARG SER MET VAL LEU THR GLY GLU ALA LYS THR SEQRES 12 A 184 ALA VAL GLU ASN TYR LEU ILE GLY SER PRO VAL VAL ASP SEQRES 13 A 184 SER GLN LYS LEU VAL TYR SER ASP PHE SER GLU ALA ALA SEQRES 14 A 184 CYS LYS VAL ASN ASN SER ASN TRP SER HIS PRO GLN PHE SEQRES 15 A 184 GLU LYS HELIX 1 1 GLY A 139 GLY A 151 1 13 HELIX 2 2 PHE A 165 LYS A 171 1 7 SHEET 1 A 3 TYR A 3 HIS A 4 0 SHEET 2 A 3 HIS A 124 ASP A 126 -1 O HIS A 124 N HIS A 4 SHEET 3 A 3 CYS A 115 TYR A 117 -1 N ARG A 116 O TRP A 125 SHEET 1 B 2 TRP A 27 GLU A 28 0 SHEET 2 B 2 LEU A 131 SER A 132 -1 O SER A 132 N TRP A 27 SHEET 1 C 3 GLU A 46 PRO A 49 0 SHEET 2 C 3 VAL A 54 VAL A 61 -1 O LYS A 55 N THR A 48 SHEET 3 C 3 GLU A 66 GLU A 70 -1 O TYR A 67 N ASP A 60 SHEET 1 D 3 ALA A 73 PRO A 75 0 SHEET 2 D 3 ILE A 84 VAL A 90 -1 O TYR A 85 N TYR A 74 SHEET 3 D 3 TYR A 93 PHE A 99 -1 O TYR A 93 N VAL A 90 SSBOND 1 CYS A 8 CYS A 115 1555 1555 1.92 SSBOND 2 CYS A 42 CYS A 170 1555 1555 1.99 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1