HEADER HYDROLASE 16-APR-04 1T1E TITLE HIGH RESOLUTION CRYSTAL STRUCTURE OF THE INTACT PRO-KUMAMOLISIN, A TITLE 2 SEDOLISIN TYPE PROTEINASE (PREVIOUSLY CALLED KUMAMOLYSIN OR KSCP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: KUMAMOLISIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SP. MN-32; SOURCE 3 ORGANISM_TAXID: 198803; SOURCE 4 GENE: KSCP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM 109 KEYWDS PROENZYME, PROSUBTILASE, ACTIVATION MECHANISM, SEDOLISIN, SERINE- KEYWDS 2 CARBOXYL PROTEINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.COMELLAS-BIGLER,K.MASKOS,R.HUBER,H.OYAMA,K.ODA,W.BODE REVDAT 5 03-APR-24 1T1E 1 REMARK REVDAT 4 14-FEB-24 1T1E 1 REMARK REVDAT 3 27-OCT-21 1T1E 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1T1E 1 VERSN REVDAT 1 03-AUG-04 1T1E 0 JRNL AUTH M.COMELLAS-BIGLER,K.MASKOS,R.HUBER,H.OYAMA,K.ODA,W.BODE JRNL TITL 1.2 A CRYSTAL STRUCTURE OF THE SERINE CARBOXYL PROTEINASE JRNL TITL 2 PRO-KUMAMOLISIN: STRUCTURE OF AN INTACT PRO-SUBTILASE JRNL REF STRUCTURE V. 12 1313 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15242607 JRNL DOI 10.1016/J.STR.2004.04.013 REMARK 2 REMARK 2 RESOLUTION. 1.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 162816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 500 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3931 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 618 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1T1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000022190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.050 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 164763 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.180 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NATIVE KUMAMOLISIN CATALYTIC DOMAIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRI-SODIUM CITRATE DIHYDRATE, HEPES REMARK 280 -NA, PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 79.32000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.79542 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 35.57333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 79.32000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 45.79542 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 35.57333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 79.32000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 45.79542 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 35.57333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 79.32000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 45.79542 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 35.57333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 79.32000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 45.79542 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 35.57333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 79.32000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 45.79542 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 35.57333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 91.59085 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 71.14667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 91.59085 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 71.14667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 91.59085 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 71.14667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 91.59085 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 71.14667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 91.59085 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 71.14667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 91.59085 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 71.14667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 MET A 4 REMARK 465 GLU A 5 REMARK 465 LYS A 6 REMARK 465 PRO A 7 REMARK 465 TRP A 8 REMARK 465 LYS A 9 REMARK 465 GLU A 10 REMARK 465 GLU A 11 REMARK 465 SER A 547 REMARK 465 ALA A 548 REMARK 465 SER A 549 REMARK 465 GLN A 550 REMARK 465 ALA A 551 REMARK 465 GLN A 552 REMARK 465 PRO A 553 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ARG A 185 REMARK 475 SER A 186 REMARK 475 GLN A 187 REMARK 475 SER A 188 REMARK 475 ALA A 189 REMARK 475 ALA A 190 REMARK 475 PRO A 192 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 12 CB CG CD OE1 OE2 REMARK 480 LYS A 13 CD CE NZ REMARK 480 GLN A 38 CG CD OE1 NE2 REMARK 480 GLN A 49 CD OE1 NE2 REMARK 480 ARG A 50 NE CZ NH1 NH2 REMARK 480 ARG A 60 NE CZ NH1 NH2 REMARK 480 ARG A 69 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS A 93 CE NZ REMARK 480 GLN A 123 OE1 NE2 REMARK 480 ARG A 177 CZ NH1 NH2 REMARK 480 GLN A 497 CD OE1 NE2 REMARK 480 GLN A 542 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 519 CA TYR A 520 1.75 REMARK 500 O ILE A 519 CA TYR A 520 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 899 O HOH A 899 5555 1.16 REMARK 500 O HOH A 969 O HOH A 969 10545 1.18 REMARK 500 O HOH A 1314 O HOH A 1314 5555 1.23 REMARK 500 O HOH A 975 O HOH A 975 5555 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 519 CA - C - O ANGL. DEV. = -12.8 DEGREES REMARK 500 ILE A 519 CA - C - N ANGL. DEV. = 18.4 DEGREES REMARK 500 ILE A 519 CA - C - N ANGL. DEV. = 17.8 DEGREES REMARK 500 TYR A 520 C - N - CA ANGL. DEV. = -40.0 DEGREES REMARK 500 TYR A 520 C - N - CA ANGL. DEV. = -38.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 27 -2.98 78.89 REMARK 500 THR A 35 -156.22 -140.27 REMARK 500 PRO A 66 -0.58 -53.28 REMARK 500 ALA A 68 14.27 -158.96 REMARK 500 HIS A 171 43.60 -81.86 REMARK 500 ALA A 184 108.60 162.49 REMARK 500 SER A 188 -4.87 -166.33 REMARK 500 ALA A 189 -4.53 -173.96 REMARK 500 ALA A 190 172.08 168.72 REMARK 500 PRO A 192 54.01 -95.72 REMARK 500 THR A 308 -60.16 -90.17 REMARK 500 THR A 308 -60.02 -90.17 REMARK 500 LYS A 310 57.35 39.80 REMARK 500 ALA A 433 -135.81 54.53 REMARK 500 ILE A 519 -90.43 -46.34 REMARK 500 ILE A 519 -90.92 -48.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 700 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 505 OD1 REMARK 620 2 ILE A 506 O 82.2 REMARK 620 3 GLY A 523 O 99.5 88.8 REMARK 620 4 GLY A 525 O 93.2 174.3 88.6 REMARK 620 5 ASP A 527 OD2 165.0 84.3 86.6 100.7 REMARK 620 6 HOH A 701 O 84.4 86.9 173.8 96.1 88.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GT9 RELATED DB: PDB REMARK 900 NATIVE KUMAMOLISIN CATALYTIC DOMAIN REMARK 900 RELATED ID: 1GTG RELATED DB: PDB REMARK 900 NATIVE KUMAMOLISIN CATALYTIC DOMAIN REMARK 900 RELATED ID: 1GTJ RELATED DB: PDB REMARK 900 KUMAMOLISIN CATALYTIC DOMAIN IN COMPLEX WITH AC-ILE-ALA-PHE-CHO REMARK 900 RELATED ID: 1GTL RELATED DB: PDB REMARK 900 KUMAMOLISIN CATALYTIC DOMAIN IN COMPLEX WITH AC-ILE-PRO-PHE-CHO REMARK 900 RELATED ID: 1T1G RELATED DB: PDB REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURE OF MUTANT E23A OF KUMAMOLISIN, A REMARK 900 SEDOLISIN TYPE PROTEINASE REMARK 900 RELATED ID: 1T1I RELATED DB: PDB REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURE OF MUTANT W129A OF KUMAMOLISIN, A REMARK 900 SEDOLISIN TYPE PROTEINASE DBREF 1T1E A 1 553 UNP Q8RR56 Q8RR56_9BACI 1 552 SEQADV 1T1E LEU A 160 UNP Q8RR56 PHE 160 CONFLICT SEQADV 1T1E ALA A 467 UNP Q8RR56 SER 466 ENGINEERED MUTATION SEQRES 1 A 552 MET SER ASP MET GLU LYS PRO TRP LYS GLU GLU GLU LYS SEQRES 2 A 552 ARG GLU VAL LEU ALA GLY HIS ALA ARG ARG GLN ALA PRO SEQRES 3 A 552 GLN ALA VAL ASP LYS GLY PRO VAL THR GLY ASP GLN ARG SEQRES 4 A 552 ILE SER VAL THR VAL VAL LEU ARG ARG GLN ARG GLY ASP SEQRES 5 A 552 GLU LEU GLU ALA HIS VAL GLU ARG GLN ALA ALA LEU ALA SEQRES 6 A 552 PRO HIS ALA ARG VAL HIS LEU GLU ARG GLU ALA PHE ALA SEQRES 7 A 552 ALA SER HIS GLY ALA SER LEU ASP ASP PHE ALA GLU ILE SEQRES 8 A 552 ARG LYS PHE ALA GLU ALA HIS GLY LEU THR LEU ASP ARG SEQRES 9 A 552 ALA HIS VAL ALA ALA GLY THR ALA VAL LEU SER GLY PRO SEQRES 10 A 552 VAL ASP ALA VAL ASN GLN ALA PHE GLY VAL GLU LEU ARG SEQRES 11 A 552 HIS PHE ASP HIS PRO ASP GLY SER TYR ARG SER TYR VAL SEQRES 12 A 552 GLY ASP VAL ARG VAL PRO ALA SER ILE ALA PRO LEU ILE SEQRES 13 A 552 GLU ALA VAL LEU GLY LEU ASP THR ARG PRO VAL ALA ARG SEQRES 14 A 552 PRO HIS PHE ARG LEU ARG ARG ARG ALA GLU GLY GLU PHE SEQRES 15 A 552 GLU ALA ARG SER GLN SER ALA ALA PRO THR ALA TYR THR SEQRES 16 A 552 PRO LEU ASP VAL ALA GLN ALA TYR GLN PHE PRO GLU GLY SEQRES 17 A 552 LEU ASP GLY GLN GLY GLN CYS ILE ALA ILE ILE GLU LEU SEQRES 18 A 552 GLY GLY GLY TYR ASP GLU THR SER LEU ALA GLN TYR PHE SEQRES 19 A 552 ALA SER LEU GLY VAL SER ALA PRO GLN VAL VAL SER VAL SEQRES 20 A 552 SER VAL ASP GLY ALA THR ASN GLN PRO THR GLY ASP PRO SEQRES 21 A 552 ASN GLY PRO ASP GLY GLU VAL GLU LEU ASP ILE GLU VAL SEQRES 22 A 552 ALA GLY ALA LEU ALA PRO GLY ALA LYS ILE ALA VAL TYR SEQRES 23 A 552 PHE ALA PRO ASN THR ASP ALA GLY PHE LEU ASN ALA ILE SEQRES 24 A 552 THR THR ALA VAL HIS ASP PRO THR HIS LYS PRO SER ILE SEQRES 25 A 552 VAL SER ILE SER TRP GLY GLY PRO GLU ASP SER TRP ALA SEQRES 26 A 552 PRO ALA SER ILE ALA ALA MET ASN ARG ALA PHE LEU ASP SEQRES 27 A 552 ALA ALA ALA LEU GLY VAL THR VAL LEU ALA ALA ALA GLY SEQRES 28 A 552 ASP SER GLY SER THR ASP GLY GLU GLN ASP GLY LEU TYR SEQRES 29 A 552 HIS VAL ASP PHE PRO ALA ALA SER PRO TYR VAL LEU ALA SEQRES 30 A 552 CYS GLY GLY THR ARG LEU VAL ALA SER ALA GLY ARG ILE SEQRES 31 A 552 GLU ARG GLU THR VAL TRP ASN ASP GLY PRO ASP GLY GLY SEQRES 32 A 552 SER THR GLY GLY GLY VAL SER ARG ILE PHE PRO LEU PRO SEQRES 33 A 552 SER TRP GLN GLU ARG ALA ASN VAL PRO PRO SER ALA ASN SEQRES 34 A 552 PRO GLY ALA GLY SER GLY ARG GLY VAL PRO ASP VAL ALA SEQRES 35 A 552 GLY ASN ALA ASP PRO ALA THR GLY TYR GLU VAL VAL ILE SEQRES 36 A 552 ASP GLY GLU THR THR VAL ILE GLY GLY THR ALA ALA VAL SEQRES 37 A 552 ALA PRO LEU PHE ALA ALA LEU VAL ALA ARG ILE ASN GLN SEQRES 38 A 552 LYS LEU GLY LYS PRO VAL GLY TYR LEU ASN PRO THR LEU SEQRES 39 A 552 TYR GLN LEU PRO PRO GLU VAL PHE HIS ASP ILE THR GLU SEQRES 40 A 552 GLY ASN ASN ASP ILE ALA ASN ARG ALA ARG ILE TYR GLN SEQRES 41 A 552 ALA GLY PRO GLY TRP ASP PRO CYS THR GLY LEU GLY SER SEQRES 42 A 552 PRO ILE GLY ILE ARG LEU LEU GLN ALA LEU LEU PRO SER SEQRES 43 A 552 ALA SER GLN ALA GLN PRO HET CA A 700 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *618(H2 O) HELIX 1 1 ARG A 50 ALA A 62 1 13 HELIX 2 2 GLU A 73 GLY A 82 1 10 HELIX 3 3 SER A 84 HIS A 98 1 15 HELIX 4 4 VAL A 118 GLY A 126 1 9 HELIX 5 5 ILE A 152 PRO A 154 5 3 HELIX 6 6 THR A 196 TYR A 204 1 9 HELIX 7 7 ASP A 227 GLY A 239 1 13 HELIX 8 8 GLY A 263 ALA A 279 1 17 HELIX 9 9 THR A 292 HIS A 305 1 14 HELIX 10 10 ASP A 323 TRP A 325 5 3 HELIX 11 11 ALA A 326 LEU A 343 1 18 HELIX 12 12 SER A 354 ASP A 358 5 5 HELIX 13 13 ASP A 399 GLY A 404 1 6 HELIX 14 14 ASP A 447 GLY A 451 5 5 HELIX 15 15 GLY A 465 ALA A 467 5 3 HELIX 16 16 ALA A 468 GLY A 485 1 18 HELIX 17 17 LEU A 491 TYR A 496 1 6 HELIX 18 18 GLN A 497 LEU A 498 5 2 HELIX 19 19 PRO A 499 GLU A 501 5 3 HELIX 20 20 ILE A 536 LEU A 545 1 10 SHEET 1 A 2 ARG A 14 VAL A 16 0 SHEET 2 A 2 ARG A 147 PRO A 149 -1 O VAL A 148 N GLU A 15 SHEET 1 B 3 VAL A 29 PRO A 33 0 SHEET 2 B 3 ARG A 130 ASP A 133 -1 O HIS A 131 N GLY A 32 SHEET 3 B 3 TYR A 139 SER A 141 -1 O SER A 141 N ARG A 130 SHEET 1 C 4 THR A 101 HIS A 106 0 SHEET 2 C 4 THR A 111 PRO A 117 -1 O THR A 111 N HIS A 106 SHEET 3 C 4 ARG A 39 LEU A 46 -1 N VAL A 44 O ALA A 112 SHEET 4 C 4 ILE A 156 LEU A 160 -1 O GLU A 157 N VAL A 45 SHEET 1 D 3 ARG A 169 PRO A 170 0 SHEET 2 D 3 TRP A 318 PRO A 321 -1 O GLY A 319 N ARG A 169 SHEET 3 D 3 ASP A 368 PHE A 369 -1 O PHE A 369 N GLY A 320 SHEET 1 E 3 ARG A 173 LEU A 174 0 SHEET 2 E 3 GLU A 459 GLY A 464 -1 O GLY A 464 N ARG A 173 SHEET 3 E 3 TYR A 452 ILE A 456 -1 N TYR A 452 O ILE A 463 SHEET 1 F 7 VAL A 245 SER A 249 0 SHEET 2 F 7 LYS A 283 PHE A 288 1 O VAL A 286 N VAL A 246 SHEET 3 F 7 CYS A 216 GLU A 221 1 N GLU A 221 O TYR A 287 SHEET 4 F 7 ILE A 313 ILE A 316 1 O ILE A 313 N ALA A 218 SHEET 5 F 7 THR A 346 ALA A 350 1 O THR A 346 N VAL A 314 SHEET 6 F 7 LEU A 377 SER A 387 1 O LEU A 377 N VAL A 347 SHEET 7 F 7 ARG A 390 VAL A 396 -1 O ARG A 393 N VAL A 385 SHEET 1 G 7 VAL A 245 SER A 249 0 SHEET 2 G 7 LYS A 283 PHE A 288 1 O VAL A 286 N VAL A 246 SHEET 3 G 7 CYS A 216 GLU A 221 1 N GLU A 221 O TYR A 287 SHEET 4 G 7 ILE A 313 ILE A 316 1 O ILE A 313 N ALA A 218 SHEET 5 G 7 THR A 346 ALA A 350 1 O THR A 346 N VAL A 314 SHEET 6 G 7 LEU A 377 SER A 387 1 O LEU A 377 N VAL A 347 SHEET 7 G 7 VAL A 442 ASN A 445 1 O VAL A 442 N GLY A 380 SHEET 1 H 2 GLY A 409 VAL A 410 0 SHEET 2 H 2 GLY A 438 VAL A 439 -1 O VAL A 439 N GLY A 409 SHEET 1 I 2 PHE A 503 HIS A 504 0 SHEET 2 I 2 SER A 534 PRO A 535 -1 O SER A 534 N HIS A 504 LINK OD1 ASP A 505 CA CA A 700 1555 1555 2.36 LINK O ILE A 506 CA CA A 700 1555 1555 2.38 LINK O GLY A 523 CA CA A 700 1555 1555 2.35 LINK O GLY A 525 CA CA A 700 1555 1555 2.32 LINK OD2 ASP A 527 CA CA A 700 1555 1555 2.41 LINK CA CA A 700 O HOH A 701 1555 1555 2.45 CISPEP 1 ALA A 190 PRO A 192 0 -0.22 CISPEP 2 PHE A 369 PRO A 370 0 1.74 CISPEP 3 VAL A 439 PRO A 440 0 0.23 SITE 1 AC1 6 ASP A 505 ILE A 506 GLY A 523 GLY A 525 SITE 2 AC1 6 ASP A 527 HOH A 701 CRYST1 158.640 158.640 106.720 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006304 0.003639 0.000000 0.00000 SCALE2 0.000000 0.007279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009370 0.00000