HEADER OXIDOREDUCTASE 21-APR-04 1T2D TITLE PLASMODIUM FALCIPARUM LACTATE DEHYDROGENASE COMPLEXED WITH NAD+ AND TITLE 2 OXALATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-LACTATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LDH-P; COMPND 5 EC: 1.1.1.27; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. FALCIPARUM; SOURCE 4 ORGANISM_TAXID: 5833; SOURCE 5 GENE: LDH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKK223 KEYWDS TERNARY COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CAMERON,J.READ,R.TRANTER,V.J.WINTER,R.B.SESSIONS,R.L.BRADY,L.VIVAS, AUTHOR 2 A.EASTON,H.KENDRICK,S.L.CROFT,D.BARROS,J.L.LAVANDERA,J.J.MARTIN, AUTHOR 3 F.RISCO,S.GARCIA-OCHOA,F.J.GAMO,L.SANZ,L.LEON,J.R.RUIZ,R.GABARRO, AUTHOR 4 A.MALLO,F.G.DE LAS HERAS REVDAT 5 23-AUG-23 1T2D 1 REMARK SEQADV REVDAT 4 13-JUL-11 1T2D 1 VERSN REVDAT 3 24-FEB-09 1T2D 1 VERSN REVDAT 2 27-JUL-04 1T2D 1 JRNL REVDAT 1 11-MAY-04 1T2D 0 JRNL AUTH A.CAMERON,J.READ,R.TRANTER,V.J.WINTER,R.B.SESSIONS, JRNL AUTH 2 R.L.BRADY,L.VIVAS,A.EASTON,H.KENDRICK,S.L.CROFT,D.BARROS, JRNL AUTH 3 J.L.LAVANDERA,J.J.MARTIN,F.RISCO,S.GARCIA-OCHOA,F.J.GAMO, JRNL AUTH 4 L.SANZ,L.LEON,J.R.RUIZ,R.GABARRO,A.MALLO,F.G.DE LAS HERAS JRNL TITL IDENTIFICATION AND ACTIVITY OF A SERIES OF AZOLE-BASED JRNL TITL 2 COMPOUNDS WITH LACTATE DEHYDROGENASE-DIRECTED ANTI-MALARIAL JRNL TITL 3 ACTIVITY. JRNL REF J.BIOL.CHEM. V. 279 31429 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15117937 JRNL DOI 10.1074/JBC.M402433200 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 116082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.152 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6169 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7617 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 407 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2383 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 295 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 6.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.028 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.027 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.015 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.310 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2506 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2334 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3397 ; 1.287 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5467 ; 1.305 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 5.238 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 402 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2709 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 431 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 529 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2651 ; 0.238 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1415 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 196 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.230 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 100 ; 0.314 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.107 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1560 ; 0.559 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2529 ; 0.982 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 946 ; 1.384 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 868 ; 2.225 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2506 ; 0.655 ; 2.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 295 ; 1.610 ; 2.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2465 ; 1.043 ; 2.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1T2D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-04. REMARK 100 THE DEPOSITION ID IS D_1000022224. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9091 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 127177 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.47300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1LDG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, HEPES, IMIDAZOLE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.25350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.29150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 45.16950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.25350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.29150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.16950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.25350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.29150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.16950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.25350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.29150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 45.16950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 22590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -114.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 80.50700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 86.58300 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 80.50700 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 86.58300 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 38 -46.66 73.92 REMARK 500 HIS A 231 -73.30 -157.35 REMARK 500 TYR A 235 -31.38 -141.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXL A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 324 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LDG RELATED DB: PDB REMARK 900 PFLDH WITH NADH AND OXAMATE REMARK 900 RELATED ID: 1T24 RELATED DB: PDB REMARK 900 PFLDH WITH NAD+ AND 4-HYDROXY-1,2,5-OXADIAZOLE-3-CARBOXYLIC ACID REMARK 900 RELATED ID: 1T25 RELATED DB: PDB REMARK 900 PFLDH WITH NADH AND 3-HYDROXYISOXAZOLE-4-CARBOXYLIC ACID REMARK 900 RELATED ID: 1T26 RELATED DB: PDB REMARK 900 PFLDH WITH NADH AND 4-HYDROXY-1,2,5-THIADIAZOLE-3-CARBOXYLIC ACID REMARK 900 RELATED ID: 1T2C RELATED DB: PDB REMARK 900 PFLDH WITH NADH REMARK 900 RELATED ID: 1T2E RELATED DB: PDB REMARK 900 PFLDH WITH NADH AND OXAMATE REMARK 900 RELATED ID: 1T2F RELATED DB: PDB REMARK 900 HUMANLDH WITH NAD+ AND 4-HYDROXY-1,2,5-OXADIAZOLE-3-CARBOXYLIC ACID DBREF 1T2D A 0 315 UNP Q27743 LDH1_PLAFD 1 316 SEQADV 1T2D HIS A 316 UNP Q27743 EXPRESSION TAG SEQADV 1T2D HIS A 317 UNP Q27743 EXPRESSION TAG SEQADV 1T2D HIS A 318 UNP Q27743 EXPRESSION TAG SEQADV 1T2D HIS A 319 UNP Q27743 EXPRESSION TAG SEQADV 1T2D HIS A 320 UNP Q27743 EXPRESSION TAG SEQADV 1T2D HIS A 321 UNP Q27743 EXPRESSION TAG SEQRES 1 A 322 MET ALA PRO LYS ALA LYS ILE VAL LEU VAL GLY SER GLY SEQRES 2 A 322 MET ILE GLY GLY VAL MET ALA THR LEU ILE VAL GLN LYS SEQRES 3 A 322 ASN LEU GLY ASP VAL VAL LEU PHE ASP ILE VAL LYS ASN SEQRES 4 A 322 MET PRO HIS GLY LYS ALA LEU ASP THR SER HIS THR ASN SEQRES 5 A 322 VAL MET ALA TYR SER ASN CYS LYS VAL SER GLY SER ASN SEQRES 6 A 322 THR TYR ASP ASP LEU ALA GLY ALA ASP VAL VAL ILE VAL SEQRES 7 A 322 THR ALA GLY PHE THR LYS ALA PRO GLY LYS SER ASP LYS SEQRES 8 A 322 GLU TRP ASN ARG ASP ASP LEU LEU PRO LEU ASN ASN LYS SEQRES 9 A 322 ILE MET ILE GLU ILE GLY GLY HIS ILE LYS LYS ASN CYS SEQRES 10 A 322 PRO ASN ALA PHE ILE ILE VAL VAL THR ASN PRO VAL ASP SEQRES 11 A 322 VAL MET VAL GLN LEU LEU HIS GLN HIS SER GLY VAL PRO SEQRES 12 A 322 LYS ASN LYS ILE ILE GLY LEU GLY GLY VAL LEU ASP THR SEQRES 13 A 322 SER ARG LEU LYS TYR TYR ILE SER GLN LYS LEU ASN VAL SEQRES 14 A 322 CYS PRO ARG ASP VAL ASN ALA HIS ILE VAL GLY ALA HIS SEQRES 15 A 322 GLY ASN LYS MET VAL LEU LEU LYS ARG TYR ILE THR VAL SEQRES 16 A 322 GLY GLY ILE PRO LEU GLN GLU PHE ILE ASN ASN LYS LEU SEQRES 17 A 322 ILE SER ASP ALA GLU LEU GLU ALA ILE PHE ASP ARG THR SEQRES 18 A 322 VAL ASN THR ALA LEU GLU ILE VAL ASN LEU HIS ALA SER SEQRES 19 A 322 PRO TYR VAL ALA PRO ALA ALA ALA ILE ILE GLU MET ALA SEQRES 20 A 322 GLU SER TYR LEU LYS ASP LEU LYS LYS VAL LEU ILE CYS SEQRES 21 A 322 SER THR LEU LEU GLU GLY GLN TYR GLY HIS SER ASP ILE SEQRES 22 A 322 PHE GLY GLY THR PRO VAL VAL LEU GLY ALA ASN GLY VAL SEQRES 23 A 322 GLU GLN VAL ILE GLU LEU GLN LEU ASN SER GLU GLU LYS SEQRES 24 A 322 ALA LYS PHE ASP GLU ALA ILE ALA GLU THR LYS ARG MET SEQRES 25 A 322 LYS ALA LEU ALA HIS HIS HIS HIS HIS HIS HET OXL A 322 6 HET NAD A 323 44 HET GOL A 324 6 HETNAM OXL OXALATE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 OXL C2 O4 2- FORMUL 3 NAD C21 H27 N7 O14 P2 FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *295(H2 O) HELIX 1 1 GLY A 12 LYS A 25 1 14 HELIX 2 2 ASN A 38 HIS A 49 1 12 HELIX 3 3 HIS A 49 TYR A 55 1 7 HELIX 4 4 THR A 65 ALA A 70 5 6 HELIX 5 5 ASN A 93 ASP A 96 5 4 HELIX 6 6 LEU A 97 CYS A 116 1 20 HELIX 7 7 PRO A 127 GLY A 140 1 14 HELIX 8 8 PRO A 142 ASN A 144 5 3 HELIX 9 9 GLY A 150 ASN A 167 1 18 HELIX 10 10 CYS A 169 ARG A 171 5 3 HELIX 11 11 LYS A 189 TYR A 191 5 3 HELIX 12 12 LEU A 199 ASN A 205 1 7 HELIX 13 13 SER A 209 ASN A 222 1 14 HELIX 14 14 ASN A 222 HIS A 231 1 10 HELIX 15 15 TYR A 235 LYS A 251 1 17 HELIX 16 16 GLN A 266 GLY A 268 5 3 HELIX 17 17 ASN A 294 ALA A 315 1 22 SHEET 1 A 6 VAL A 60 SER A 63 0 SHEET 2 A 6 ASP A 29 PHE A 33 1 N LEU A 32 O SER A 61 SHEET 3 A 6 LYS A 5 VAL A 9 1 N LEU A 8 O VAL A 31 SHEET 4 A 6 VAL A 74 VAL A 77 1 O VAL A 74 N VAL A 7 SHEET 5 A 6 PHE A 120 VAL A 123 1 O ILE A 122 N VAL A 77 SHEET 6 A 6 ILE A 146 GLY A 148 1 O ILE A 147 N VAL A 123 SHEET 1 B 3 VAL A 173 ASN A 174 0 SHEET 2 B 3 THR A 193 VAL A 194 -1 O THR A 193 N ASN A 174 SHEET 3 B 3 ILE A 197 PRO A 198 -1 O ILE A 197 N VAL A 194 SHEET 1 C 2 ILE A 177 VAL A 178 0 SHEET 2 C 2 VAL A 186 LEU A 187 -1 O VAL A 186 N VAL A 178 SHEET 1 D 3 LYS A 255 GLU A 264 0 SHEET 2 D 3 SER A 270 GLY A 281 -1 O ILE A 272 N LEU A 263 SHEET 3 D 3 GLY A 284 VAL A 288 -1 O GLU A 286 N VAL A 279 CISPEP 1 ALA A 1 PRO A 2 0 -9.88 CISPEP 2 ASN A 126 PRO A 127 0 -4.49 SITE 1 AC1 9 ARG A 94 ASN A 126 LEU A 153 ARG A 157 SITE 2 AC1 9 HIS A 181 ALA A 224 PRO A 234 NAD A 323 SITE 3 AC1 9 HOH A 404 SITE 1 AC2 35 GLY A 12 MET A 13 ILE A 14 PHE A 33 SITE 2 AC2 35 ASP A 34 ILE A 35 VAL A 36 TYR A 66 SITE 3 AC2 35 THR A 78 ALA A 79 GLY A 80 PHE A 81 SITE 4 AC2 35 THR A 82 LEU A 97 ASN A 101 VAL A 124 SITE 5 AC2 35 THR A 125 ASN A 126 VAL A 128 LEU A 149 SITE 6 AC2 35 LEU A 153 HIS A 181 PRO A 234 OXL A 322 SITE 7 AC2 35 HOH A 371 HOH A 377 HOH A 404 HOH A 413 SITE 8 AC2 35 HOH A 441 HOH A 463 HOH A 494 HOH A 534 SITE 9 AC2 35 HOH A 551 HOH A 607 HOH A 617 SITE 1 AC3 10 THR A 155 LYS A 159 ASN A 174 ALA A 175 SITE 2 AC3 10 GLY A 195 VAL A 256 ILE A 258 HOH A 376 SITE 3 AC3 10 HOH A 410 HOH A 508 CRYST1 80.507 86.583 90.339 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012421 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011069 0.00000