data_1T3W # _entry.id 1T3W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1T3W RCSB RCSB022279 WWPDB D_1000022279 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1DD9 _pdbx_database_related.details 'Structure Of The E. coli DnaG Catalytic Core (Residues 115 to 428)' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1T3W _pdbx_database_status.recvd_initial_deposition_date 2004-04-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Oakley, A.J.' 1 'Loscha, K.V.' 2 'Schaeffer, P.M.' 3 'Liepinsh, E.' 4 'Wilce, M.C.J.' 5 'Otting, G.' 6 'Dixon, N.E.' 7 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal and solution structures of the helicase-binding domain of Escherichia coli primase' J.Biol.Chem. 280 11495 11504 2005 JBCHA3 US 0021-9258 0071 ? 15649896 10.1074/jbc.M412645200 1 'Expression, purification, crystallization, and NMR studies of the helicase interaction domain of Escherichia coli DnaG primase' 'PROTEIN EXPR.PURIF.' 33 304 310 2004 PEXPEJ US 1046-5928 0757 ? 14711519 10.1016/j.pep.2003.10.001 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Oakley, A.J.' 1 primary 'Loscha, K.V.' 2 primary 'Schaeffer, P.M.' 3 primary 'Liepinsh, E.' 4 primary 'Pintacuda, G.' 5 primary 'Wilce, M.C.J.' 6 primary 'Otting, G.' 7 primary 'Dixon, N.E.' 8 1 'Loscha, K.' 9 1 'Oakley, A.J.' 10 1 'Bancia, B.' 11 1 'Schaeffer, P.M.' 12 1 'Prosselkov, P.' 13 1 'Otting, G.' 14 1 'Wilce, M.C.' 15 1 'Dixon, N.E.' 16 # _cell.entry_id 1T3W _cell.length_a 142.239 _cell.length_b 142.239 _cell.length_c 192.131 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1T3W _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA primase' 16859.656 2 2.7.7.- ? ? ? 2 non-polymer syn 'ACETIC ACID' 60.052 1 ? ? ? ? 3 water nat water 18.015 5 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;AAESGVSRPVPQLKRTT(MSE)RILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYRG TNNAATLEKLS(MSE)WDDIADKNIAEQTFTDSLNH(MSE)FDSLLELRQEELIARERTHGLSNEERLELWTLNQELAKK ; _entity_poly.pdbx_seq_one_letter_code_can ;AAESGVSRPVPQLKRTTMRILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYRGTNNA ATLEKLSMWDDIADKNIAEQTFTDSLNHMFDSLLELRQEELIARERTHGLSNEERLELWTLNQELAKK ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ALA n 1 3 GLU n 1 4 SER n 1 5 GLY n 1 6 VAL n 1 7 SER n 1 8 ARG n 1 9 PRO n 1 10 VAL n 1 11 PRO n 1 12 GLN n 1 13 LEU n 1 14 LYS n 1 15 ARG n 1 16 THR n 1 17 THR n 1 18 MSE n 1 19 ARG n 1 20 ILE n 1 21 LEU n 1 22 ILE n 1 23 GLY n 1 24 LEU n 1 25 LEU n 1 26 VAL n 1 27 GLN n 1 28 ASN n 1 29 PRO n 1 30 GLU n 1 31 LEU n 1 32 ALA n 1 33 THR n 1 34 LEU n 1 35 VAL n 1 36 PRO n 1 37 PRO n 1 38 LEU n 1 39 GLU n 1 40 ASN n 1 41 LEU n 1 42 ASP n 1 43 GLU n 1 44 ASN n 1 45 LYS n 1 46 LEU n 1 47 PRO n 1 48 GLY n 1 49 LEU n 1 50 GLY n 1 51 LEU n 1 52 PHE n 1 53 ARG n 1 54 GLU n 1 55 LEU n 1 56 VAL n 1 57 ASN n 1 58 THR n 1 59 CYS n 1 60 LEU n 1 61 SER n 1 62 GLN n 1 63 PRO n 1 64 GLY n 1 65 LEU n 1 66 THR n 1 67 THR n 1 68 GLY n 1 69 GLN n 1 70 LEU n 1 71 LEU n 1 72 GLU n 1 73 HIS n 1 74 TYR n 1 75 ARG n 1 76 GLY n 1 77 THR n 1 78 ASN n 1 79 ASN n 1 80 ALA n 1 81 ALA n 1 82 THR n 1 83 LEU n 1 84 GLU n 1 85 LYS n 1 86 LEU n 1 87 SER n 1 88 MSE n 1 89 TRP n 1 90 ASP n 1 91 ASP n 1 92 ILE n 1 93 ALA n 1 94 ASP n 1 95 LYS n 1 96 ASN n 1 97 ILE n 1 98 ALA n 1 99 GLU n 1 100 GLN n 1 101 THR n 1 102 PHE n 1 103 THR n 1 104 ASP n 1 105 SER n 1 106 LEU n 1 107 ASN n 1 108 HIS n 1 109 MSE n 1 110 PHE n 1 111 ASP n 1 112 SER n 1 113 LEU n 1 114 LEU n 1 115 GLU n 1 116 LEU n 1 117 ARG n 1 118 GLN n 1 119 GLU n 1 120 GLU n 1 121 LEU n 1 122 ILE n 1 123 ALA n 1 124 ARG n 1 125 GLU n 1 126 ARG n 1 127 THR n 1 128 HIS n 1 129 GLY n 1 130 LEU n 1 131 SER n 1 132 ASN n 1 133 GLU n 1 134 GLU n 1 135 ARG n 1 136 LEU n 1 137 GLU n 1 138 LEU n 1 139 TRP n 1 140 THR n 1 141 LEU n 1 142 ASN n 1 143 GLN n 1 144 GLU n 1 145 LEU n 1 146 ALA n 1 147 LYS n 1 148 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene 'dnaG, dnaP, parB' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pKL1176 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PRIM_ECOLI _struct_ref.pdbx_db_accession P0ABS5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AAESGVSRPVPQLKRTTMRILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYRGTNNA ATLEKLSMWDDIADKNIAEQTFTDSLNHMFDSLLELRQEELIARERTHGLSNEERLELWTLNQELAKK ; _struct_ref.pdbx_align_begin 434 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1T3W A 1 ? 148 ? P0ABS5 434 ? 581 ? 434 581 2 1 1T3W B 1 ? 148 ? P0ABS5 434 ? 581 ? 434 581 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACY non-polymer . 'ACETIC ACID' ? 'C2 H4 O2' 60.052 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1T3W _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 82.92 _exptl_crystal.description ? _exptl_crystal.density_Matthews 7.20 _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details '5% v/v PEG4000, 0.2M ammonium sulfate, 0.1M sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD MARRESEARCH 2003-03-01 mirrors 2 CCD MARRESEARCH 2003-03-01 mirrors # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'Diamond (111) double-crystal' MAD x-ray 2 1 M 'Diamond (111) double-crystal' MAD x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.979862 1.0 2 0.98004 1.0 3 0.9776 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'APS BEAMLINE 14-ID-B' APS 14-ID-B ? '0.979862, 0.98004' 2 SYNCHROTRON 'APS BEAMLINE 14-ID-B' APS 14-ID-B ? 0.9776 # _reflns.entry_id 1T3W _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I -4 _reflns.d_resolution_high 2.8 _reflns.d_resolution_low 50 _reflns.number_all 24195 _reflns.number_obs 24195 _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs 0.099 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.89 _reflns.B_iso_Wilson_estimate 85.4 _reflns.pdbx_redundancy 5.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 2.9 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.689 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2 # _refine.entry_id 1T3W _refine.ls_number_reflns_obs 22786 _refine.ls_number_reflns_all 22786 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 97.63 _refine.ls_R_factor_obs 0.27069 _refine.ls_R_factor_all 0.2706 _refine.ls_R_factor_R_work 0.26869 _refine.ls_R_factor_R_free 0.30816 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 1240 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.898 _refine.correlation_coeff_Fo_to_Fc_free 0.854 _refine.B_iso_mean 65.526 _refine.aniso_B[1][1] 0.68 _refine.aniso_B[2][2] 0.68 _refine.aniso_B[3][3] -1.37 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.303 _refine.pdbx_overall_ESU_R_Free 0.273 _refine.overall_SU_ML 0.198 _refine.overall_SU_B 9.839 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2153 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 5 _refine_hist.number_atoms_total 2162 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 50.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.012 0.021 ? 2195 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.498 1.984 ? 2973 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.374 5.000 ? 269 'X-RAY DIFFRACTION' ? r_chiral_restr 0.109 0.200 ? 350 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.020 ? 1630 'X-RAY DIFFRACTION' ? r_nbd_refined 0.235 0.200 ? 950 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.163 0.200 ? 50 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.279 0.200 ? 51 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.219 0.200 ? 4 'X-RAY DIFFRACTION' ? r_mcbond_it 0.905 1.500 ? 1348 'X-RAY DIFFRACTION' ? r_mcangle_it 1.736 2.000 ? 2173 'X-RAY DIFFRACTION' ? r_scbond_it 2.080 3.000 ? 847 'X-RAY DIFFRACTION' ? r_scangle_it 3.711 4.500 ? 800 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.800 _refine_ls_shell.d_res_low 2.873 _refine_ls_shell.number_reflns_R_work 1680 _refine_ls_shell.R_factor_R_work 0.323 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.381 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 93 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1T3W _struct.title 'Crystal Structure of the E.coli DnaG C-terminal domain (residues 434 to 581)' _struct.pdbx_descriptor 'DNA primase (E.C.2.7.7.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1T3W _struct_keywords.pdbx_keywords REPLICATION _struct_keywords.text 'DnaG, DNA-directed RNA polymerase, E. coli, DNA replication, REPLICATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # loop_ _struct_biol.id _struct_biol.details _struct_biol.pdbx_parent_biol_id 1 'DnaG is a monomer in solution' ? 2 ? ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 14 ? ASN A 28 ? LYS A 447 ASN A 461 1 ? 15 HELX_P HELX_P2 2 PRO A 29 ? VAL A 35 ? PRO A 462 VAL A 468 5 ? 7 HELX_P HELX_P3 3 ASP A 42 ? LEU A 46 ? ASP A 475 LEU A 479 5 ? 5 HELX_P HELX_P4 4 GLY A 48 ? SER A 61 ? GLY A 481 SER A 494 1 ? 14 HELX_P HELX_P5 5 THR A 66 ? HIS A 73 ? THR A 499 HIS A 506 1 ? 8 HELX_P HELX_P6 6 TYR A 74 ? ARG A 75 ? TYR A 507 ARG A 508 5 ? 2 HELX_P HELX_P7 7 GLY A 76 ? ASN A 78 ? GLY A 509 ASN A 511 5 ? 3 HELX_P HELX_P8 8 ASN A 79 ? HIS A 108 ? ASN A 512 HIS A 541 1 ? 30 HELX_P HELX_P9 9 PHE A 110 ? ARG A 126 ? PHE A 543 ARG A 559 1 ? 17 HELX_P HELX_P10 10 SER A 131 ? LEU A 145 ? SER A 564 LEU A 578 1 ? 15 HELX_P HELX_P11 11 THR B 16 ? ASN B 28 ? THR B 449 ASN B 461 1 ? 13 HELX_P HELX_P12 12 PRO B 29 ? VAL B 35 ? PRO B 462 VAL B 468 5 ? 7 HELX_P HELX_P13 13 GLY B 48 ? GLN B 62 ? GLY B 481 GLN B 495 1 ? 15 HELX_P HELX_P14 14 THR B 66 ? HIS B 73 ? THR B 499 HIS B 506 1 ? 8 HELX_P HELX_P15 15 ASN B 79 ? MSE B 88 ? ASN B 512 MSE B 521 1 ? 10 HELX_P HELX_P16 16 ASP B 94 ? ALA B 123 ? ASP B 527 ALA B 556 1 ? 30 HELX_P HELX_P17 17 SER B 131 ? LYS B 147 ? SER B 564 LYS B 580 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A THR 17 C ? ? ? 1_555 A MSE 18 N ? ? A THR 450 A MSE 451 1_555 ? ? ? ? ? ? ? 1.337 ? covale2 covale ? ? A MSE 18 C ? ? ? 1_555 A ARG 19 N ? ? A MSE 451 A ARG 452 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale ? ? A SER 87 C ? ? ? 1_555 A MSE 88 N ? ? A SER 520 A MSE 521 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale ? ? A MSE 88 C ? ? ? 1_555 A TRP 89 N ? ? A MSE 521 A TRP 522 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale ? ? A HIS 108 C ? ? ? 1_555 A MSE 109 N ? ? A HIS 541 A MSE 542 1_555 ? ? ? ? ? ? ? 1.341 ? covale6 covale ? ? A MSE 109 C ? ? ? 1_555 A PHE 110 N ? ? A MSE 542 A PHE 543 1_555 ? ? ? ? ? ? ? 1.329 ? covale7 covale ? ? B THR 17 C ? ? ? 1_555 B MSE 18 N ? ? B THR 450 B MSE 451 1_555 ? ? ? ? ? ? ? 1.340 ? covale8 covale ? ? B MSE 18 C ? ? ? 1_555 B ARG 19 N ? ? B MSE 451 B ARG 452 1_555 ? ? ? ? ? ? ? 1.333 ? covale9 covale ? ? B SER 87 C ? ? ? 1_555 B MSE 88 N B ? B SER 520 B MSE 521 1_555 ? ? ? ? ? ? ? 1.333 ? covale10 covale ? ? B SER 87 C ? ? ? 1_555 B MSE 88 N A ? B SER 520 B MSE 521 1_555 ? ? ? ? ? ? ? 1.334 ? covale11 covale ? ? B MSE 88 C B ? ? 1_555 B TRP 89 N ? ? B MSE 521 B TRP 522 1_555 ? ? ? ? ? ? ? 1.332 ? covale12 covale ? ? B MSE 88 C A ? ? 1_555 B TRP 89 N ? ? B MSE 521 B TRP 522 1_555 ? ? ? ? ? ? ? 1.331 ? covale13 covale ? ? B HIS 108 C ? ? ? 1_555 B MSE 109 N ? ? B HIS 541 B MSE 542 1_555 ? ? ? ? ? ? ? 1.338 ? covale14 covale ? ? B MSE 109 C ? ? ? 1_555 B PHE 110 N ? ? B MSE 542 B PHE 543 1_555 ? ? ? ? ? ? ? 1.326 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE ACY B 582' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 LEU A 113 ? LEU A 546 . ? 6_555 ? 2 AC1 6 LEU B 41 ? LEU B 474 . ? 6_555 ? 3 AC1 6 ASP B 42 ? ASP B 475 . ? 6_555 ? 4 AC1 6 LYS B 45 ? LYS B 478 . ? 6_555 ? 5 AC1 6 ASN B 132 ? ASN B 565 . ? 1_555 ? 6 AC1 6 LEU B 136 ? LEU B 569 . ? 1_555 ? # _database_PDB_matrix.entry_id 1T3W _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1T3W _atom_sites.fract_transf_matrix[1][1] 0.007030 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007030 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005205 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 434 ? ? ? A . n A 1 2 ALA 2 435 ? ? ? A . n A 1 3 GLU 3 436 ? ? ? A . n A 1 4 SER 4 437 ? ? ? A . n A 1 5 GLY 5 438 ? ? ? A . n A 1 6 VAL 6 439 ? ? ? A . n A 1 7 SER 7 440 ? ? ? A . n A 1 8 ARG 8 441 ? ? ? A . n A 1 9 PRO 9 442 ? ? ? A . n A 1 10 VAL 10 443 ? ? ? A . n A 1 11 PRO 11 444 ? ? ? A . n A 1 12 GLN 12 445 ? ? ? A . n A 1 13 LEU 13 446 ? ? ? A . n A 1 14 LYS 14 447 447 LYS LYS A . n A 1 15 ARG 15 448 448 ARG ARG A . n A 1 16 THR 16 449 449 THR THR A . n A 1 17 THR 17 450 450 THR THR A . n A 1 18 MSE 18 451 451 MSE MSE A . n A 1 19 ARG 19 452 452 ARG ARG A . n A 1 20 ILE 20 453 453 ILE ILE A . n A 1 21 LEU 21 454 454 LEU LEU A . n A 1 22 ILE 22 455 455 ILE ILE A . n A 1 23 GLY 23 456 456 GLY GLY A . n A 1 24 LEU 24 457 457 LEU LEU A . n A 1 25 LEU 25 458 458 LEU LEU A . n A 1 26 VAL 26 459 459 VAL VAL A . n A 1 27 GLN 27 460 460 GLN GLN A . n A 1 28 ASN 28 461 461 ASN ASN A . n A 1 29 PRO 29 462 462 PRO PRO A . n A 1 30 GLU 30 463 463 GLU GLU A . n A 1 31 LEU 31 464 464 LEU LEU A . n A 1 32 ALA 32 465 465 ALA ALA A . n A 1 33 THR 33 466 466 THR THR A . n A 1 34 LEU 34 467 467 LEU LEU A . n A 1 35 VAL 35 468 468 VAL VAL A . n A 1 36 PRO 36 469 469 PRO PRO A . n A 1 37 PRO 37 470 470 PRO PRO A . n A 1 38 LEU 38 471 471 LEU LEU A . n A 1 39 GLU 39 472 472 GLU GLU A . n A 1 40 ASN 40 473 473 ASN ASN A . n A 1 41 LEU 41 474 474 LEU LEU A . n A 1 42 ASP 42 475 475 ASP ASP A . n A 1 43 GLU 43 476 476 GLU GLU A . n A 1 44 ASN 44 477 477 ASN ASN A . n A 1 45 LYS 45 478 478 LYS LYS A . n A 1 46 LEU 46 479 479 LEU LEU A . n A 1 47 PRO 47 480 480 PRO PRO A . n A 1 48 GLY 48 481 481 GLY GLY A . n A 1 49 LEU 49 482 482 LEU LEU A . n A 1 50 GLY 50 483 483 GLY GLY A . n A 1 51 LEU 51 484 484 LEU LEU A . n A 1 52 PHE 52 485 485 PHE PHE A . n A 1 53 ARG 53 486 486 ARG ARG A . n A 1 54 GLU 54 487 487 GLU GLU A . n A 1 55 LEU 55 488 488 LEU LEU A . n A 1 56 VAL 56 489 489 VAL VAL A . n A 1 57 ASN 57 490 490 ASN ASN A . n A 1 58 THR 58 491 491 THR THR A . n A 1 59 CYS 59 492 492 CYS CYS A . n A 1 60 LEU 60 493 493 LEU LEU A . n A 1 61 SER 61 494 494 SER SER A . n A 1 62 GLN 62 495 495 GLN GLN A . n A 1 63 PRO 63 496 496 PRO PRO A . n A 1 64 GLY 64 497 497 GLY GLY A . n A 1 65 LEU 65 498 498 LEU LEU A . n A 1 66 THR 66 499 499 THR THR A . n A 1 67 THR 67 500 500 THR THR A . n A 1 68 GLY 68 501 501 GLY GLY A . n A 1 69 GLN 69 502 502 GLN GLN A . n A 1 70 LEU 70 503 503 LEU LEU A . n A 1 71 LEU 71 504 504 LEU LEU A . n A 1 72 GLU 72 505 505 GLU GLU A . n A 1 73 HIS 73 506 506 HIS HIS A . n A 1 74 TYR 74 507 507 TYR TYR A . n A 1 75 ARG 75 508 508 ARG ARG A . n A 1 76 GLY 76 509 509 GLY GLY A . n A 1 77 THR 77 510 510 THR THR A . n A 1 78 ASN 78 511 511 ASN ASN A . n A 1 79 ASN 79 512 512 ASN ASN A . n A 1 80 ALA 80 513 513 ALA ALA A . n A 1 81 ALA 81 514 514 ALA ALA A . n A 1 82 THR 82 515 515 THR THR A . n A 1 83 LEU 83 516 516 LEU LEU A . n A 1 84 GLU 84 517 517 GLU GLU A . n A 1 85 LYS 85 518 518 LYS LYS A . n A 1 86 LEU 86 519 519 LEU LEU A . n A 1 87 SER 87 520 520 SER SER A . n A 1 88 MSE 88 521 521 MSE MSE A . n A 1 89 TRP 89 522 522 TRP TRP A . n A 1 90 ASP 90 523 523 ASP ASP A . n A 1 91 ASP 91 524 524 ASP ASP A . n A 1 92 ILE 92 525 525 ILE ILE A . n A 1 93 ALA 93 526 526 ALA ALA A . n A 1 94 ASP 94 527 527 ASP ASP A . n A 1 95 LYS 95 528 528 LYS LYS A . n A 1 96 ASN 96 529 529 ASN ASN A . n A 1 97 ILE 97 530 530 ILE ILE A . n A 1 98 ALA 98 531 531 ALA ALA A . n A 1 99 GLU 99 532 532 GLU GLU A . n A 1 100 GLN 100 533 533 GLN GLN A . n A 1 101 THR 101 534 534 THR THR A . n A 1 102 PHE 102 535 535 PHE PHE A . n A 1 103 THR 103 536 536 THR THR A . n A 1 104 ASP 104 537 537 ASP ASP A . n A 1 105 SER 105 538 538 SER SER A . n A 1 106 LEU 106 539 539 LEU LEU A . n A 1 107 ASN 107 540 540 ASN ASN A . n A 1 108 HIS 108 541 541 HIS HIS A . n A 1 109 MSE 109 542 542 MSE MSE A . n A 1 110 PHE 110 543 543 PHE PHE A . n A 1 111 ASP 111 544 544 ASP ASP A . n A 1 112 SER 112 545 545 SER SER A . n A 1 113 LEU 113 546 546 LEU LEU A . n A 1 114 LEU 114 547 547 LEU LEU A . n A 1 115 GLU 115 548 548 GLU GLU A . n A 1 116 LEU 116 549 549 LEU LEU A . n A 1 117 ARG 117 550 550 ARG ARG A . n A 1 118 GLN 118 551 551 GLN GLN A . n A 1 119 GLU 119 552 552 GLU GLU A . n A 1 120 GLU 120 553 553 GLU GLU A . n A 1 121 LEU 121 554 554 LEU LEU A . n A 1 122 ILE 122 555 555 ILE ILE A . n A 1 123 ALA 123 556 556 ALA ALA A . n A 1 124 ARG 124 557 557 ARG ARG A . n A 1 125 GLU 125 558 558 GLU GLU A . n A 1 126 ARG 126 559 559 ARG ARG A . n A 1 127 THR 127 560 560 THR THR A . n A 1 128 HIS 128 561 561 HIS HIS A . n A 1 129 GLY 129 562 562 GLY GLY A . n A 1 130 LEU 130 563 563 LEU LEU A . n A 1 131 SER 131 564 564 SER SER A . n A 1 132 ASN 132 565 565 ASN ASN A . n A 1 133 GLU 133 566 566 GLU GLU A . n A 1 134 GLU 134 567 567 GLU GLU A . n A 1 135 ARG 135 568 568 ARG ARG A . n A 1 136 LEU 136 569 569 LEU LEU A . n A 1 137 GLU 137 570 570 GLU GLU A . n A 1 138 LEU 138 571 571 LEU LEU A . n A 1 139 TRP 139 572 572 TRP TRP A . n A 1 140 THR 140 573 573 THR THR A . n A 1 141 LEU 141 574 574 LEU LEU A . n A 1 142 ASN 142 575 575 ASN ASN A . n A 1 143 GLN 143 576 576 GLN GLN A . n A 1 144 GLU 144 577 577 GLU GLU A . n A 1 145 LEU 145 578 578 LEU LEU A . n A 1 146 ALA 146 579 579 ALA ALA A . n A 1 147 LYS 147 580 580 LYS LYS A . n A 1 148 LYS 148 581 ? ? ? A . n B 1 1 ALA 1 434 ? ? ? B . n B 1 2 ALA 2 435 ? ? ? B . n B 1 3 GLU 3 436 ? ? ? B . n B 1 4 SER 4 437 ? ? ? B . n B 1 5 GLY 5 438 ? ? ? B . n B 1 6 VAL 6 439 ? ? ? B . n B 1 7 SER 7 440 ? ? ? B . n B 1 8 ARG 8 441 ? ? ? B . n B 1 9 PRO 9 442 ? ? ? B . n B 1 10 VAL 10 443 ? ? ? B . n B 1 11 PRO 11 444 ? ? ? B . n B 1 12 GLN 12 445 ? ? ? B . n B 1 13 LEU 13 446 ? ? ? B . n B 1 14 LYS 14 447 447 LYS LYS B . n B 1 15 ARG 15 448 448 ARG ARG B . n B 1 16 THR 16 449 449 THR THR B . n B 1 17 THR 17 450 450 THR THR B . n B 1 18 MSE 18 451 451 MSE MSE B . n B 1 19 ARG 19 452 452 ARG ARG B . n B 1 20 ILE 20 453 453 ILE ILE B . n B 1 21 LEU 21 454 454 LEU LEU B . n B 1 22 ILE 22 455 455 ILE ILE B . n B 1 23 GLY 23 456 456 GLY GLY B . n B 1 24 LEU 24 457 457 LEU LEU B . n B 1 25 LEU 25 458 458 LEU LEU B . n B 1 26 VAL 26 459 459 VAL VAL B . n B 1 27 GLN 27 460 460 GLN GLN B . n B 1 28 ASN 28 461 461 ASN ASN B . n B 1 29 PRO 29 462 462 PRO PRO B . n B 1 30 GLU 30 463 463 GLU GLU B . n B 1 31 LEU 31 464 464 LEU LEU B . n B 1 32 ALA 32 465 465 ALA ALA B . n B 1 33 THR 33 466 466 THR THR B . n B 1 34 LEU 34 467 467 LEU LEU B . n B 1 35 VAL 35 468 468 VAL VAL B . n B 1 36 PRO 36 469 469 PRO PRO B . n B 1 37 PRO 37 470 470 PRO PRO B . n B 1 38 LEU 38 471 471 LEU LEU B . n B 1 39 GLU 39 472 472 GLU GLU B . n B 1 40 ASN 40 473 473 ASN ASN B . n B 1 41 LEU 41 474 474 LEU LEU B . n B 1 42 ASP 42 475 475 ASP ASP B . n B 1 43 GLU 43 476 476 GLU GLU B . n B 1 44 ASN 44 477 477 ASN ASN B . n B 1 45 LYS 45 478 478 LYS LYS B . n B 1 46 LEU 46 479 479 LEU LEU B . n B 1 47 PRO 47 480 480 PRO PRO B . n B 1 48 GLY 48 481 481 GLY GLY B . n B 1 49 LEU 49 482 482 LEU LEU B . n B 1 50 GLY 50 483 483 GLY GLY B . n B 1 51 LEU 51 484 484 LEU LEU B . n B 1 52 PHE 52 485 485 PHE PHE B . n B 1 53 ARG 53 486 486 ARG ARG B . n B 1 54 GLU 54 487 487 GLU GLU B . n B 1 55 LEU 55 488 488 LEU LEU B . n B 1 56 VAL 56 489 489 VAL VAL B . n B 1 57 ASN 57 490 490 ASN ASN B . n B 1 58 THR 58 491 491 THR THR B . n B 1 59 CYS 59 492 492 CYS CYS B . n B 1 60 LEU 60 493 493 LEU LEU B . n B 1 61 SER 61 494 494 SER SER B . n B 1 62 GLN 62 495 495 GLN GLN B . n B 1 63 PRO 63 496 496 PRO PRO B . n B 1 64 GLY 64 497 497 GLY GLY B . n B 1 65 LEU 65 498 498 LEU LEU B . n B 1 66 THR 66 499 499 THR THR B . n B 1 67 THR 67 500 500 THR THR B . n B 1 68 GLY 68 501 501 GLY GLY B . n B 1 69 GLN 69 502 502 GLN GLN B . n B 1 70 LEU 70 503 503 LEU LEU B . n B 1 71 LEU 71 504 504 LEU LEU B . n B 1 72 GLU 72 505 505 GLU GLU B . n B 1 73 HIS 73 506 506 HIS HIS B . n B 1 74 TYR 74 507 507 TYR TYR B . n B 1 75 ARG 75 508 508 ARG ARG B . n B 1 76 GLY 76 509 509 GLY GLY B . n B 1 77 THR 77 510 510 THR THR B . n B 1 78 ASN 78 511 511 ASN ASN B . n B 1 79 ASN 79 512 512 ASN ASN B . n B 1 80 ALA 80 513 513 ALA ALA B . n B 1 81 ALA 81 514 514 ALA ALA B . n B 1 82 THR 82 515 515 THR THR B . n B 1 83 LEU 83 516 516 LEU LEU B . n B 1 84 GLU 84 517 517 GLU GLU B . n B 1 85 LYS 85 518 518 LYS LYS B . n B 1 86 LEU 86 519 519 LEU LEU B . n B 1 87 SER 87 520 520 SER SER B . n B 1 88 MSE 88 521 521 MSE MSE B . n B 1 89 TRP 89 522 522 TRP TRP B . n B 1 90 ASP 90 523 523 ASP ASP B . n B 1 91 ASP 91 524 524 ASP ASP B . n B 1 92 ILE 92 525 525 ILE ILE B . n B 1 93 ALA 93 526 526 ALA ALA B . n B 1 94 ASP 94 527 527 ASP ASP B . n B 1 95 LYS 95 528 528 LYS LYS B . n B 1 96 ASN 96 529 529 ASN ASN B . n B 1 97 ILE 97 530 530 ILE ILE B . n B 1 98 ALA 98 531 531 ALA ALA B . n B 1 99 GLU 99 532 532 GLU GLU B . n B 1 100 GLN 100 533 533 GLN GLN B . n B 1 101 THR 101 534 534 THR THR B . n B 1 102 PHE 102 535 535 PHE PHE B . n B 1 103 THR 103 536 536 THR THR B . n B 1 104 ASP 104 537 537 ASP ASP B . n B 1 105 SER 105 538 538 SER SER B . n B 1 106 LEU 106 539 539 LEU LEU B . n B 1 107 ASN 107 540 540 ASN ASN B . n B 1 108 HIS 108 541 541 HIS HIS B . n B 1 109 MSE 109 542 542 MSE MSE B . n B 1 110 PHE 110 543 543 PHE PHE B . n B 1 111 ASP 111 544 544 ASP ASP B . n B 1 112 SER 112 545 545 SER SER B . n B 1 113 LEU 113 546 546 LEU LEU B . n B 1 114 LEU 114 547 547 LEU LEU B . n B 1 115 GLU 115 548 548 GLU GLU B . n B 1 116 LEU 116 549 549 LEU LEU B . n B 1 117 ARG 117 550 550 ARG ARG B . n B 1 118 GLN 118 551 551 GLN GLN B . n B 1 119 GLU 119 552 552 GLU GLU B . n B 1 120 GLU 120 553 553 GLU GLU B . n B 1 121 LEU 121 554 554 LEU LEU B . n B 1 122 ILE 122 555 555 ILE ILE B . n B 1 123 ALA 123 556 556 ALA ALA B . n B 1 124 ARG 124 557 557 ARG ARG B . n B 1 125 GLU 125 558 558 GLU GLU B . n B 1 126 ARG 126 559 559 ARG ARG B . n B 1 127 THR 127 560 560 THR THR B . n B 1 128 HIS 128 561 561 HIS HIS B . n B 1 129 GLY 129 562 562 GLY GLY B . n B 1 130 LEU 130 563 563 LEU LEU B . n B 1 131 SER 131 564 564 SER SER B . n B 1 132 ASN 132 565 565 ASN ASN B . n B 1 133 GLU 133 566 566 GLU GLU B . n B 1 134 GLU 134 567 567 GLU GLU B . n B 1 135 ARG 135 568 568 ARG ARG B . n B 1 136 LEU 136 569 569 LEU LEU B . n B 1 137 GLU 137 570 570 GLU GLU B . n B 1 138 LEU 138 571 571 LEU LEU B . n B 1 139 TRP 139 572 572 TRP TRP B . n B 1 140 THR 140 573 573 THR THR B . n B 1 141 LEU 141 574 574 LEU LEU B . n B 1 142 ASN 142 575 575 ASN ASN B . n B 1 143 GLN 143 576 576 GLN GLN B . n B 1 144 GLU 144 577 577 GLU GLU B . n B 1 145 LEU 145 578 578 LEU LEU B . n B 1 146 ALA 146 579 579 ALA ALA B . n B 1 147 LYS 147 580 580 LYS LYS B . n B 1 148 LYS 148 581 581 LYS LYS B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACY 1 582 518 ACY ACY B . D 3 HOH 1 2 2 HOH HOH A . D 3 HOH 2 3 3 HOH HOH A . D 3 HOH 3 20 20 HOH HOH A . E 3 HOH 1 51 51 HOH HOH B . E 3 HOH 2 52 52 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 18 A MSE 451 ? MET SELENOMETHIONINE 2 A MSE 88 A MSE 521 ? MET SELENOMETHIONINE 3 A MSE 109 A MSE 542 ? MET SELENOMETHIONINE 4 B MSE 18 B MSE 451 ? MET SELENOMETHIONINE 5 B MSE 88 B MSE 521 ? MET SELENOMETHIONINE 6 B MSE 109 B MSE 542 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 software_defined_assembly PISA,PQS tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D 2 1 B,C,E 3 1,2 A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 3 'ABSA (A^2)' 11260 ? 3 MORE -100 ? 3 'SSA (A^2)' 29020 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 x,-y+1/2,-z+1/4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 71.1195000000 0.0000000000 0.0000000000 -1.0000000000 48.0327500000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-11-02 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2016-09-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Refinement description' 5 3 'Structure model' 'Version format compliance' 6 4 'Structure model' Other # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 9.5550 _pdbx_refine_tls.origin_y 43.7510 _pdbx_refine_tls.origin_z 9.6740 _pdbx_refine_tls.T[1][1] 0.1611 _pdbx_refine_tls.T[2][2] 0.0176 _pdbx_refine_tls.T[3][3] 0.0745 _pdbx_refine_tls.T[1][2] 0.0532 _pdbx_refine_tls.T[1][3] -0.0492 _pdbx_refine_tls.T[2][3] -0.0168 _pdbx_refine_tls.L[1][1] 0.2488 _pdbx_refine_tls.L[2][2] 0.5285 _pdbx_refine_tls.L[3][3] 0.4645 _pdbx_refine_tls.L[1][2] -0.3002 _pdbx_refine_tls.L[1][3] -0.1994 _pdbx_refine_tls.L[2][3] 0.0509 _pdbx_refine_tls.S[1][1] 0.0694 _pdbx_refine_tls.S[2][2] -0.1893 _pdbx_refine_tls.S[3][3] 0.1198 _pdbx_refine_tls.S[1][2] 0.0754 _pdbx_refine_tls.S[1][3] -0.0265 _pdbx_refine_tls.S[2][3] -0.0697 _pdbx_refine_tls.S[2][1] -0.2019 _pdbx_refine_tls.S[3][1] -0.1120 _pdbx_refine_tls.S[3][2] -0.0204 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 B 51 B 52 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 A 2 A 20 ? . . . . ? 'X-RAY DIFFRACTION' 3 1 B 582 B 582 ? . . . . ? 'X-RAY DIFFRACTION' 4 1 B 447 B 581 ? . . . . ? 'X-RAY DIFFRACTION' 5 1 A 447 A 580 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE SELENOMETHIONINE RESIDUES 451, 521, 542 OF CHAIN A AND 542 OF CHAIN B WERE ORIGINALLY LABELLED AS METHIONINE RESIDUES DUE TO A LACK OF ELECTRON SIDE CHAIN DENSITY ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 487 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OH _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 TYR _pdbx_validate_close_contact.auth_seq_id_2 507 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.02 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 524 ? ? CG A ASP 524 ? ? OD2 A ASP 524 ? ? 123.96 118.30 5.66 0.90 N 2 1 CA B LEU 498 ? ? CB B LEU 498 ? ? CG B LEU 498 ? ? 129.92 115.30 14.62 2.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 476 ? ? -13.13 -44.69 2 1 GLN A 495 ? ? -154.93 68.67 3 1 HIS A 506 ? ? -68.67 7.32 4 1 HIS A 561 ? ? 110.58 -33.48 5 1 LEU A 578 ? ? -95.71 30.61 6 1 ALA A 579 ? ? -30.31 81.01 7 1 ARG B 448 ? ? -94.64 -121.42 8 1 ASN B 473 ? ? 57.72 19.48 9 1 LEU B 498 ? ? -20.60 141.89 10 1 ASN B 511 ? ? -46.89 -10.32 11 1 ALA B 556 ? ? -79.87 36.85 12 1 ARG B 557 ? ? -148.32 -5.97 13 1 LYS B 580 ? ? -147.87 -83.03 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 434 ? A ALA 1 2 1 Y 1 A ALA 435 ? A ALA 2 3 1 Y 1 A GLU 436 ? A GLU 3 4 1 Y 1 A SER 437 ? A SER 4 5 1 Y 1 A GLY 438 ? A GLY 5 6 1 Y 1 A VAL 439 ? A VAL 6 7 1 Y 1 A SER 440 ? A SER 7 8 1 Y 1 A ARG 441 ? A ARG 8 9 1 Y 1 A PRO 442 ? A PRO 9 10 1 Y 1 A VAL 443 ? A VAL 10 11 1 Y 1 A PRO 444 ? A PRO 11 12 1 Y 1 A GLN 445 ? A GLN 12 13 1 Y 1 A LEU 446 ? A LEU 13 14 1 Y 1 A LYS 581 ? A LYS 148 15 1 Y 1 B ALA 434 ? B ALA 1 16 1 Y 1 B ALA 435 ? B ALA 2 17 1 Y 1 B GLU 436 ? B GLU 3 18 1 Y 1 B SER 437 ? B SER 4 19 1 Y 1 B GLY 438 ? B GLY 5 20 1 Y 1 B VAL 439 ? B VAL 6 21 1 Y 1 B SER 440 ? B SER 7 22 1 Y 1 B ARG 441 ? B ARG 8 23 1 Y 1 B PRO 442 ? B PRO 9 24 1 Y 1 B VAL 443 ? B VAL 10 25 1 Y 1 B PRO 444 ? B PRO 11 26 1 Y 1 B GLN 445 ? B GLN 12 27 1 Y 1 B LEU 446 ? B LEU 13 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETIC ACID' ACY 3 water HOH #