HEADER VIRAL PROTEIN 06-MAY-04 1T6O TITLE NUCLEOCAPSID-BINDING DOMAIN OF THE MEASLES VIRUS P PROTEIN (AMINO TITLE 2 ACIDS 457-507) IN COMPLEX WITH AMINO ACIDS 486-505 OF THE MEASLES TITLE 3 VIRUS N PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 457-507; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: CHIMERIC MOLECULE ENCOMPASSING AMINO ACIDS 457-507 OF COMPND 8 MEASLES P (CHAIN A) AND 486-505 OF MEASLES N (CHAIN B). THEY ARE COMPND 9 CONNECTED BY A FLEXIBLE 8 AMINO ACID LINKER (GS)4 (CHAIN L); COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: LINKER; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: PHOSPHOPROTEIN; COMPND 16 CHAIN: B; COMPND 17 FRAGMENT: RESIDUES 486-505; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MEASLES VIRUS; SOURCE 3 ORGANISM_TAXID: 11234; SOURCE 4 STRAIN: MORATEN VACCINE STRAIN; SOURCE 5 GENE: P/V; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-STAR(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET41A(+); SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHETIC LINKER; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: MEASLES VIRUS; SOURCE 16 ORGANISM_TAXID: 11234; SOURCE 17 STRAIN: MORATEN VACCINE STRAIN; SOURCE 18 GENE: N; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 21 EXPRESSION_SYSTEM_STRAIN: BL21-STAR(DE3); SOURCE 22 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 23 EXPRESSION_SYSTEM_PLASMID: PET41A(+) KEYWDS FOUR HELIX BUNDLE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.L.KINGSTON,D.J.HAMEL,L.S.GAY,F.W.DAHLQUIST,B.W.MATTHEWS REVDAT 5 16-OCT-24 1T6O 1 REMARK REVDAT 4 23-AUG-23 1T6O 1 REMARK REVDAT 3 27-OCT-21 1T6O 1 SEQADV LINK REVDAT 2 24-FEB-09 1T6O 1 VERSN REVDAT 1 03-AUG-04 1T6O 0 JRNL AUTH R.L.KINGSTON,D.J.HAMEL,L.S.GAY,F.W.DAHLQUIST,B.W.MATTHEWS JRNL TITL STRUCTURAL BASIS FOR THE ATTACHMENT OF A PARAMYXOVIRAL JRNL TITL 2 POLYMERASE TO ITS TEMPLATE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 8301 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15159535 JRNL DOI 10.1073/PNAS.0402690101 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.L.KINGSTON,W.A.BAASE,L.S.GAY REMARK 1 TITL CHARACTERIZATION OF NUCLEOCAPSID BINDING BY THE MEASLES AND REMARK 1 TITL 2 THE MUMPS VIRUS PHOSPHOPROTEIN REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 5306 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : TEST SET OMITTED FROM ALL REMARK 3 REFINEMENT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 307 REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.2320 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 5306 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 548 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 28 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.005 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 0.846 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : MOEWS & KRETSINGER REMARK 3 KSOL : 0.85 REMARK 3 BSOL : 300.0 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH & HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : INDIVIDUAL ISOTROPIC B REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1T6O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-04. REMARK 100 THE DEPOSITION ID IS D_1000022379. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 9.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5306 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: 1OKS.PDB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMPSO/KOH BUFFER, 0.5 - 1.0 M REMARK 280 AMMONIUM SULFATE, PH 9.1, VAPOR DIFFUSION, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.88900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 21.11300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 21.11300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.44450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 21.11300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 21.11300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.33350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 21.11300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 21.11300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.44450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 21.11300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 21.11300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.33350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 40.88900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, L, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 457 REMARK 465 LYS A 507 REMARK 465 GLY L 478 REMARK 465 SER L 479 REMARK 465 GLY L 480 REMARK 465 SER L 481 REMARK 465 GLY L 482 REMARK 465 SER L 483 REMARK 465 SER B 505 REMARK 999 REMARK 999 SEQUENCE REMARK 999 STRUCTURE OF A CHIMERIC MOLECULE ENCOMPASSING AMINO REMARK 999 ACIDS 457-507 OF MEASLES P AND 486-505 OF MEASLES N. REMARK 999 THEY ARE CONNECTED BY A FLEXIBLE 8 AMINO ACID LINKER REMARK 999 (GS)4, WHICH IS LARGELY DISORDERED IN THE CRYSTAL REMARK 999 STRUCTURE. THE ASYMMETRIC UNIT OF THE CRYSTAL CONTAINS REMARK 999 THE P MOIETY FROM ONE MOLECULE (CHAIN A) BOUND TO THE REMARK 999 N MOIETY OF A DIFFERENT MOLECULE (CHAIN B). LINK REMARK 999 RECORD BETWEEN CHAIN A AND L IS NOT PROVIDED SINCE THE REMARK 999 PART OF THE CHAIN L WHICH IS LINKED TO CHAIN A IS MISSING REMARK 999 FROM THE COORDINATES DUE TO LACK OF ELECTRON DENSITY. DBREF 1T6O A 457 507 GB 9181875 AAF85668 457 507 DBREF 1T6O B 486 505 GB 9181874 AAF85667 486 505 DBREF 1T6O L 478 485 PDB 1T6O 1T6O 478 485 SEQADV 1T6O GLY A 458 GB 9181875 PRO 458 ENGINEERED MUTATION SEQRES 1 A 51 GLY GLY ALA SER ARG SER VAL ILE ARG SER ILE ILE LYS SEQRES 2 A 51 SER SER ARG LEU GLU GLU ASP ARG LYS ARG TYR LEU MET SEQRES 3 A 51 THR LEU LEU ASP ASP ILE LYS GLY ALA ASN ASP LEU ALA SEQRES 4 A 51 LYS PHE HIS GLN MET LEU MET LYS ILE ILE MET LYS SEQRES 1 L 8 GLY SER GLY SER GLY SER GLY SER SEQRES 1 B 20 GLN ASP SER ARG ARG SER ALA ASP ALA LEU LEU ARG LEU SEQRES 2 B 20 GLN ALA MET ALA GLY ILE SER FORMUL 4 HOH *28(H2 O) HELIX 1 1 SER A 460 SER A 471 1 12 HELIX 2 2 GLU A 474 ILE A 488 1 15 HELIX 3 3 GLY A 490 MET A 506 1 17 HELIX 4 4 GLN B 486 GLY B 503 1 18 LINK C SER L 485 N GLN B 486 1555 1555 1.33 CRYST1 42.226 42.226 81.778 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023682 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023682 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012228 0.00000