HEADER HYDROLASE/IMMUNE SYSTEM 07-MAY-04 1T6V TITLE CRYSTAL STRUCTURE ANALYSIS OF THE NURSE SHARK NEW ANTIGEN RECEPTOR TITLE 2 (NAR) VARIABLE DOMAIN IN COMPLEX WITH LYSOZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: L, M; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D 4, GAL D IV; COMPND 5 EC: 3.2.1.17; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NOVEL ANTIGEN RECEPTOR; COMPND 8 CHAIN: N, O; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 TISSUE: HEN EGG WHITE; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: GINGLYMOSTOMA CIRRATUM; SOURCE 8 ORGANISM_COMMON: NURSE SHARK; SOURCE 9 ORGANISM_TAXID: 7801; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE; SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PIMS100 KEYWDS IMMUNOGLOBULIN FOLD, PROTEIN-PROTEIN COMPLEX, HYDROLASE-IMMUNE SYSTEM KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.L.STANFIELD,H.DOOLEY,M.F.FLAJNIK,I.A.WILSON REVDAT 4 23-AUG-23 1T6V 1 REMARK REVDAT 3 24-FEB-09 1T6V 1 VERSN REVDAT 2 15-FEB-05 1T6V 1 JRNL REVDAT 1 24-AUG-04 1T6V 0 JRNL AUTH R.L.STANFIELD,H.DOOLEY,M.F.FLAJNIK,I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF A SHARK SINGLE-DOMAIN ANTIBODY V REGION JRNL TITL 2 IN COMPLEX WITH LYSOZYME. JRNL REF SCIENCE V. 305 1770 2004 JRNL REFN ISSN 0036-8075 JRNL PMID 15319492 JRNL DOI 10.1126/SCIENCE.1101148 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.9999 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 51760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2559 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3704 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 193 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3670 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 289 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.834 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3744 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3248 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5062 ; 1.867 ; 1.924 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7528 ; 0.979 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 476 ; 6.416 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;33.042 ;23.103 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 612 ;12.131 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;20.243 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 540 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4270 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 818 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 676 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3244 ; 0.199 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2315 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 191 ; 0.134 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.154 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 70 ; 0.234 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.093 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2995 ; 1.510 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1020 ; 0.374 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3744 ; 1.815 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1663 ; 3.024 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1318 ; 4.063 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1T6V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-04. REMARK 100 THE DEPOSITION ID IS D_1000022386. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54344 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 46.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49700 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1SQ2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 10,000, 0.1M IMIDAZOLE MALATE, REMARK 280 PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 37.89500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.90500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.89500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.90500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, N REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, O REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA N 1 REMARK 465 ALA O 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG N 69 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP N 72 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP N 93 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP N 106 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP M 52 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG M 68 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG O 2 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG O 8 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG O 8 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG O 38 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP N 72 61.52 64.17 REMARK 500 LEU M 84 64.78 -108.51 REMARK 500 ASP O 93 121.06 -178.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL N 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL O 114 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SQ2 RELATED DB: PDB REMARK 900 THE SAME COMPLEX IN A DIFFERENT CRYSTAL FORM. DBREF 1T6V L 1 129 UNP P00698 LYSC_CHICK 19 147 DBREF 1T6V M 1 129 UNP P00698 LYSC_CHICK 19 147 DBREF 1T6V N 1 113 UNP Q8AXI4 Q8AXI4_GINCI 1 113 DBREF 1T6V O 1 113 UNP Q8AXI4 Q8AXI4_GINCI 1 113 SEQRES 1 L 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 L 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 L 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 L 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 L 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 L 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 L 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 L 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 L 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 L 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU SEQRES 1 N 113 ALA ARG VAL ASP GLN THR PRO ARG SER VAL THR LYS GLU SEQRES 2 N 113 THR GLY GLU SER LEU THR ILE ASN CYS VAL LEU ARG ASP SEQRES 3 N 113 ALA SER TYR ALA LEU GLY SER THR CYS TRP TYR ARG LYS SEQRES 4 N 113 LYS SER GLY GLU GLY ASN GLU GLU SER ILE SER LYS GLY SEQRES 5 N 113 GLY ARG TYR VAL GLU THR VAL ASN SER GLY SER LYS SER SEQRES 6 N 113 PHE SER LEU ARG ILE ASN ASP LEU THR VAL GLU ASP GLY SEQRES 7 N 113 GLY THR TYR ARG CYS GLY LEU GLY VAL ALA GLY GLY TYR SEQRES 8 N 113 CYS ASP TYR ALA LEU CYS SER SER ARG TYR ALA GLU CYS SEQRES 9 N 113 GLY ASP GLY THR ALA VAL THR VAL ASN SEQRES 1 M 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 M 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 M 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 M 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 M 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 M 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 M 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 M 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 M 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 M 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU SEQRES 1 O 113 ALA ARG VAL ASP GLN THR PRO ARG SER VAL THR LYS GLU SEQRES 2 O 113 THR GLY GLU SER LEU THR ILE ASN CYS VAL LEU ARG ASP SEQRES 3 O 113 ALA SER TYR ALA LEU GLY SER THR CYS TRP TYR ARG LYS SEQRES 4 O 113 LYS SER GLY GLU GLY ASN GLU GLU SER ILE SER LYS GLY SEQRES 5 O 113 GLY ARG TYR VAL GLU THR VAL ASN SER GLY SER LYS SER SEQRES 6 O 113 PHE SER LEU ARG ILE ASN ASP LEU THR VAL GLU ASP GLY SEQRES 7 O 113 GLY THR TYR ARG CYS GLY LEU GLY VAL ALA GLY GLY TYR SEQRES 8 O 113 CYS ASP TYR ALA LEU CYS SER SER ARG TYR ALA GLU CYS SEQRES 9 O 113 GLY ASP GLY THR ALA VAL THR VAL ASN HET CL N 114 1 HET CL O 114 1 HETNAM CL CHLORIDE ION FORMUL 5 CL 2(CL 1-) FORMUL 7 HOH *289(H2 O) HELIX 1 1 GLY L 4 HIS L 15 1 12 HELIX 2 2 ASN L 19 TYR L 23 5 5 HELIX 3 3 SER L 24 ASN L 37 1 14 HELIX 4 4 PRO L 79 SER L 85 5 7 HELIX 5 5 ILE L 88 SER L 100 1 13 HELIX 6 6 ASN L 103 ALA L 107 5 5 HELIX 7 7 TRP L 108 CYS L 115 1 8 HELIX 8 8 ASP L 119 ILE L 124 5 6 HELIX 9 9 THR N 74 ASP N 77 5 4 HELIX 10 10 ASP N 93 SER N 99 5 7 HELIX 11 11 GLY M 4 HIS M 15 1 12 HELIX 12 12 ASN M 19 TYR M 23 5 5 HELIX 13 13 SER M 24 ASN M 37 1 14 HELIX 14 14 PRO M 79 LEU M 84 5 6 HELIX 15 15 ILE M 88 SER M 100 1 13 HELIX 16 16 ASN M 103 ALA M 107 5 5 HELIX 17 17 TRP M 108 CYS M 115 1 8 HELIX 18 18 ASP M 119 ARG M 125 5 7 HELIX 19 19 THR O 74 ASP O 77 5 4 HELIX 20 20 ASP O 93 SER O 99 5 7 SHEET 1 A 3 THR L 43 ARG L 45 0 SHEET 2 A 3 THR L 51 TYR L 53 -1 O ASP L 52 N ASN L 44 SHEET 3 A 3 ILE L 58 ASN L 59 -1 O ILE L 58 N TYR L 53 SHEET 1 B 4 VAL N 3 THR N 6 0 SHEET 2 B 4 LEU N 18 LEU N 24 -1 O VAL N 23 N ASP N 4 SHEET 3 B 4 SER N 65 ILE N 70 -1 O ILE N 70 N LEU N 18 SHEET 4 B 4 TYR N 55 ASN N 60 -1 N VAL N 56 O ARG N 69 SHEET 1 C 5 SER N 9 GLU N 13 0 SHEET 2 C 5 THR N 108 ASN N 113 1 O ASN N 113 N LYS N 12 SHEET 3 C 5 GLY N 79 LEU N 85 -1 N GLY N 79 O VAL N 110 SHEET 4 C 5 THR N 34 LYS N 40 -1 N LYS N 39 O THR N 80 SHEET 5 C 5 GLU N 46 SER N 48 -1 O GLU N 47 N ARG N 38 SHEET 1 D 3 THR M 43 ARG M 45 0 SHEET 2 D 3 THR M 51 TYR M 53 -1 O ASP M 52 N ASN M 44 SHEET 3 D 3 ILE M 58 ASN M 59 -1 O ILE M 58 N TYR M 53 SHEET 1 E 4 VAL O 3 THR O 6 0 SHEET 2 E 4 LEU O 18 LEU O 24 -1 O ASN O 21 N THR O 6 SHEET 3 E 4 SER O 65 ILE O 70 -1 O LEU O 68 N ILE O 20 SHEET 4 E 4 TYR O 55 ASN O 60 -1 N VAL O 56 O ARG O 69 SHEET 1 F 5 SER O 9 GLU O 13 0 SHEET 2 F 5 THR O 108 ASN O 113 1 O ASN O 113 N LYS O 12 SHEET 3 F 5 GLY O 79 LEU O 85 -1 N GLY O 79 O VAL O 110 SHEET 4 F 5 THR O 34 LYS O 40 -1 N LYS O 39 O THR O 80 SHEET 5 F 5 GLU O 47 SER O 48 -1 O GLU O 47 N ARG O 38 SSBOND 1 CYS L 6 CYS L 127 1555 1555 2.01 SSBOND 2 CYS L 30 CYS L 115 1555 1555 2.05 SSBOND 3 CYS L 64 CYS L 80 1555 1555 2.06 SSBOND 4 CYS L 76 CYS L 94 1555 1555 2.05 SSBOND 5 CYS N 22 CYS N 83 1555 1555 2.01 SSBOND 6 CYS N 35 CYS N 92 1555 1555 2.02 SSBOND 7 CYS N 97 CYS N 104 1555 1555 2.05 SSBOND 8 CYS M 6 CYS M 127 1555 1555 2.09 SSBOND 9 CYS M 30 CYS M 115 1555 1555 2.05 SSBOND 10 CYS M 64 CYS M 80 1555 1555 2.09 SSBOND 11 CYS M 76 CYS M 94 1555 1555 2.05 SSBOND 12 CYS O 22 CYS O 83 1555 1555 2.05 SSBOND 13 CYS O 35 CYS O 92 1555 1555 2.00 SSBOND 14 CYS O 97 CYS O 104 1555 1555 2.05 CISPEP 1 THR N 6 PRO N 7 0 -7.15 CISPEP 2 THR O 6 PRO O 7 0 1.48 SITE 1 AC1 5 THR L 43 ASN L 44 ARG L 45 LYS N 12 SITE 2 AC1 5 THR N 19 SITE 1 AC2 5 ARG M 45 LYS O 12 LEU O 18 THR O 19 SITE 2 AC2 5 HOH O 169 CRYST1 75.790 113.810 58.440 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013194 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008787 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017112 0.00000