HEADER OXIDOREDUCTASE 18-MAY-04 1T9M TITLE X-RAY CRYSTAL STRUCTURE OF PHZG FROM PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE PYRIDOXAMINE 5'-PHOSPHATE OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: PHZG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL-21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS PHENAZINE, PHZG, CHORISMATE, PSEUDOMONAS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.F.PARSONS,E.EISENSTEIN,J.E.LADNER REVDAT 3 23-AUG-23 1T9M 1 REMARK REVDAT 2 24-FEB-09 1T9M 1 VERSN REVDAT 1 02-NOV-04 1T9M 0 JRNL AUTH J.F.PARSONS,K.CALABRESE,E.EISENSTEIN,J.E.LADNER JRNL TITL STRUCTURE OF THE PHENAZINE BIOSYNTHESIS ENZYME PHZG. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 60 2110 2004 JRNL REFN ISSN 0907-4449 JRNL PMID 15502343 JRNL DOI 10.1107/S0907444904022474 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.27 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1576 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4257 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 244 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3288 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 363 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.21000 REMARK 3 B22 (A**2) : 0.86000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.463 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3470 ; 0.025 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4726 ; 1.954 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 406 ; 6.729 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 478 ; 0.162 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2746 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1513 ; 0.212 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 316 ; 0.177 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.213 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.212 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2050 ; 1.351 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3284 ; 2.188 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1420 ; 3.545 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1442 ; 5.500 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1T9M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-04. REMARK 100 THE DEPOSITION ID IS D_1000022484. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MSC BLUE CONFOCAL OPTICS REMARK 200 OPTICS : MSC BLUE CONFOCAL OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31579 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 54.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.15900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1DNL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE, 0.1M TRIS, 25% REMARK 280 (W/V) PEG 3350, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.79500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.54000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.51000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.54000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.79500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.51000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER AND THE DIMER IS REMARK 300 CONTAINED IN AN ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 VAL A 3 REMARK 465 ASN A 4 REMARK 465 ALA A 5 REMARK 465 ASN A 6 REMARK 465 ILE A 7 REMARK 465 SER A 8 REMARK 465 GLU A 9 REMARK 465 SER A 10 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 VAL B 3 REMARK 465 ASN B 4 REMARK 465 ALA B 5 REMARK 465 ASN B 6 REMARK 465 ILE B 7 REMARK 465 SER B 8 REMARK 465 GLU B 9 REMARK 465 SER B 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 513 O HOH B 701 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 102 CE2 TYR A 102 CD2 0.096 REMARK 500 GLU A 122 CG GLU A 122 CD 0.092 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 42 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP A 84 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 121 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 LEU A 198 CB - CG - CD2 ANGL. DEV. = 10.3 DEGREES REMARK 500 ASP B 150 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 81 -168.08 -161.74 REMARK 500 SER A 145 -3.38 76.07 REMARK 500 ASP A 203 -128.76 -116.98 REMARK 500 GLU A 204 -80.98 -94.15 REMARK 500 SER B 85 -179.80 -65.75 REMARK 500 ASP B 121 -36.97 -38.97 REMARK 500 SER B 145 -7.29 81.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 FMN 250 IS ASSOCIATED WITH CHAIN A. REMARK 600 FMN 350 IS ASSOCIATED WITH CHAIN B. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NP9 RELATED DB: PDB REMARK 900 PHZD IS ANOTHER ENZYME IN THE PHENAZINE CHORISMATE PATHWAY REMARK 900 RELATED ID: 1T6K RELATED DB: PDB REMARK 900 PHZF IS ANOTHER ENZYME IN THE PHENAZINE CHORISMATE PATHWAY DBREF 1T9M A 1 214 UNP O69755 O69755_PSEAE 1 214 DBREF 1T9M B 1 214 UNP O69755 O69755_PSEAE 1 214 SEQRES 1 A 214 MET GLY VAL ASN ALA ASN ILE SER GLU SER LEU THR GLY SEQRES 2 A 214 THR ILE GLU ALA PRO PHE PRO GLU PHE GLU ALA PRO PRO SEQRES 3 A 214 ALA ASN PRO MET GLU VAL LEU ARG ASN TRP LEU GLU ARG SEQRES 4 A 214 ALA ARG ARG TYR GLY VAL ARG GLU PRO ARG ALA LEU ALA SEQRES 5 A 214 LEU ALA THR VAL ASP GLY GLN GLY ARG PRO SER THR ARG SEQRES 6 A 214 ILE VAL VAL ILE ALA GLU LEU GLY GLU ARG GLY VAL VAL SEQRES 7 A 214 PHE ALA THR HIS ALA ASP SER GLN LYS GLY ARG GLU LEU SEQRES 8 A 214 ALA GLN ASN PRO TRP ALA SER GLY VAL LEU TYR TRP ARG SEQRES 9 A 214 GLU SER SER GLN GLN ILE ILE LEU ASN GLY ARG ALA GLU SEQRES 10 A 214 ARG LEU PRO ASP GLU ARG ALA ASP ALA GLN TRP LEU SER SEQRES 11 A 214 ARG PRO TYR GLN THR HIS PRO MET SER ILE ALA SER ARG SEQRES 12 A 214 GLN SER GLU THR LEU ALA ASP ILE HIS ALA LEU ARG ALA SEQRES 13 A 214 GLU ALA ARG ARG LEU ALA GLU THR ASP GLY PRO LEU PRO SEQRES 14 A 214 ARG PRO PRO GLY TYR CYS LEU PHE GLU LEU CYS LEU GLU SEQRES 15 A 214 SER VAL GLU PHE TRP GLY ASN GLY THR GLU ARG LEU HIS SEQRES 16 A 214 GLU ARG LEU ARG TYR ASP ARG ASP GLU GLY GLY TRP LYS SEQRES 17 A 214 HIS ARG TYR LEU GLN PRO SEQRES 1 B 214 MET GLY VAL ASN ALA ASN ILE SER GLU SER LEU THR GLY SEQRES 2 B 214 THR ILE GLU ALA PRO PHE PRO GLU PHE GLU ALA PRO PRO SEQRES 3 B 214 ALA ASN PRO MET GLU VAL LEU ARG ASN TRP LEU GLU ARG SEQRES 4 B 214 ALA ARG ARG TYR GLY VAL ARG GLU PRO ARG ALA LEU ALA SEQRES 5 B 214 LEU ALA THR VAL ASP GLY GLN GLY ARG PRO SER THR ARG SEQRES 6 B 214 ILE VAL VAL ILE ALA GLU LEU GLY GLU ARG GLY VAL VAL SEQRES 7 B 214 PHE ALA THR HIS ALA ASP SER GLN LYS GLY ARG GLU LEU SEQRES 8 B 214 ALA GLN ASN PRO TRP ALA SER GLY VAL LEU TYR TRP ARG SEQRES 9 B 214 GLU SER SER GLN GLN ILE ILE LEU ASN GLY ARG ALA GLU SEQRES 10 B 214 ARG LEU PRO ASP GLU ARG ALA ASP ALA GLN TRP LEU SER SEQRES 11 B 214 ARG PRO TYR GLN THR HIS PRO MET SER ILE ALA SER ARG SEQRES 12 B 214 GLN SER GLU THR LEU ALA ASP ILE HIS ALA LEU ARG ALA SEQRES 13 B 214 GLU ALA ARG ARG LEU ALA GLU THR ASP GLY PRO LEU PRO SEQRES 14 B 214 ARG PRO PRO GLY TYR CYS LEU PHE GLU LEU CYS LEU GLU SEQRES 15 B 214 SER VAL GLU PHE TRP GLY ASN GLY THR GLU ARG LEU HIS SEQRES 16 B 214 GLU ARG LEU ARG TYR ASP ARG ASP GLU GLY GLY TRP LYS SEQRES 17 B 214 HIS ARG TYR LEU GLN PRO HET SO4 A 351 5 HET SO4 A 352 5 HET FMN A 250 31 HET SO4 B 353 5 HET SO4 B 354 5 HET FMN B 350 31 HET ACY B 301 4 HET ACY B 302 4 HETNAM SO4 SULFATE ION HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ACY ACETIC ACID HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 SO4 4(O4 S 2-) FORMUL 5 FMN 2(C17 H21 N4 O9 P) FORMUL 9 ACY 2(C2 H4 O2) FORMUL 11 HOH *363(H2 O) HELIX 1 1 ASN A 28 GLY A 44 1 17 HELIX 2 2 SER A 85 ASN A 94 1 10 HELIX 3 3 PRO A 120 ARG A 131 1 12 HELIX 4 4 PRO A 132 GLN A 134 5 3 HELIX 5 5 THR A 135 SER A 142 1 8 HELIX 6 6 ASP A 150 ALA A 162 1 13 HELIX 7 7 ASN B 28 TYR B 43 1 16 HELIX 8 8 SER B 85 ASN B 94 1 10 HELIX 9 9 PRO B 120 ARG B 131 1 12 HELIX 10 10 PRO B 132 GLN B 134 5 3 HELIX 11 11 THR B 135 SER B 142 1 8 HELIX 12 12 ASP B 150 GLU B 163 1 14 SHEET 1 A 7 PRO A 62 VAL A 68 0 SHEET 2 A 7 ALA A 50 VAL A 56 -1 N LEU A 51 O VAL A 67 SHEET 3 A 7 TRP A 96 TRP A 103 -1 O SER A 98 N ALA A 54 SHEET 4 A 7 GLN A 108 ARG A 118 -1 O GLY A 114 N ALA A 97 SHEET 5 A 7 TYR A 174 THR A 191 -1 O GLU A 182 N ASN A 113 SHEET 6 A 7 GLY A 76 HIS A 82 -1 N VAL A 77 O LEU A 179 SHEET 7 A 7 GLU A 71 LEU A 72 -1 N GLU A 71 O VAL A 78 SHEET 1 B 7 PRO A 62 VAL A 68 0 SHEET 2 B 7 ALA A 50 VAL A 56 -1 N LEU A 51 O VAL A 67 SHEET 3 B 7 TRP A 96 TRP A 103 -1 O SER A 98 N ALA A 54 SHEET 4 B 7 GLN A 108 ARG A 118 -1 O GLY A 114 N ALA A 97 SHEET 5 B 7 TYR A 174 THR A 191 -1 O GLU A 182 N ASN A 113 SHEET 6 B 7 LEU A 194 ARG A 202 -1 O LEU A 198 N PHE A 186 SHEET 7 B 7 TRP A 207 LEU A 212 -1 O ARG A 210 N ARG A 199 SHEET 1 C 7 PRO B 62 VAL B 68 0 SHEET 2 C 7 ALA B 50 VAL B 56 -1 N LEU B 51 O VAL B 67 SHEET 3 C 7 TRP B 96 TRP B 103 -1 O SER B 98 N ALA B 54 SHEET 4 C 7 GLN B 108 ARG B 118 -1 O GLN B 108 N TRP B 103 SHEET 5 C 7 TYR B 174 GLY B 188 -1 O GLU B 178 N GLU B 117 SHEET 6 C 7 GLY B 76 HIS B 82 -1 N VAL B 77 O LEU B 179 SHEET 7 C 7 GLU B 71 LEU B 72 -1 N GLU B 71 O VAL B 78 SHEET 1 D 7 PRO B 62 VAL B 68 0 SHEET 2 D 7 ALA B 50 VAL B 56 -1 N LEU B 51 O VAL B 67 SHEET 3 D 7 TRP B 96 TRP B 103 -1 O SER B 98 N ALA B 54 SHEET 4 D 7 GLN B 108 ARG B 118 -1 O GLN B 108 N TRP B 103 SHEET 5 D 7 TYR B 174 GLY B 188 -1 O GLU B 178 N GLU B 117 SHEET 6 D 7 GLU B 196 ASP B 203 -1 O TYR B 200 N VAL B 184 SHEET 7 D 7 GLY B 206 TYR B 211 -1 O ARG B 210 N ARG B 199 CISPEP 1 GLY A 166 PRO A 167 0 10.23 SITE 1 AC1 4 ARG A 39 GLN A 59 ARG A 61 HOH B 748 SITE 1 AC2 4 ARG A 118 ARG A 170 PRO A 172 GLY A 173 SITE 1 AC3 5 ARG B 118 ARG B 170 PRO B 172 GLY B 173 SITE 2 AC3 5 HOH B 721 SITE 1 AC4 5 ARG A 41 ARG A 42 PRO B 95 TRP B 96 SITE 2 AC4 5 ARG B 115 SITE 1 AC5 21 ARG A 65 ILE A 66 VAL A 67 VAL A 68 SITE 2 AC5 21 ALA A 80 THR A 81 SER A 85 GLN A 86 SITE 3 AC5 21 LYS A 87 GLN A 144 SER A 145 HOH A 420 SITE 4 AC5 21 HOH A 421 HOH A 427 HOH A 431 HOH A 487 SITE 5 AC5 21 TYR B 102 GLN B 109 TRP B 187 ARG B 197 SITE 6 AC5 21 HOH B 405 SITE 1 AC6 21 TYR A 102 GLN A 109 TRP A 187 ARG A 197 SITE 2 AC6 21 HOH A 403 HOH A 670 ARG B 65 ILE B 66 SITE 3 AC6 21 VAL B 67 VAL B 68 ALA B 80 THR B 81 SITE 4 AC6 21 SER B 85 GLN B 86 LYS B 87 GLN B 144 SITE 5 AC6 21 SER B 145 HOH B 408 HOH B 430 HOH B 444 SITE 6 AC6 21 HOH B 446 SITE 1 AC7 6 TYR A 102 ARG A 104 HOH A 452 TYR B 102 SITE 2 AC7 6 ARG B 104 HOH B 552 SITE 1 AC8 5 ARG A 46 GLU A 105 HOH A 402 GLU B 105 SITE 2 AC8 5 HOH B 412 CRYST1 63.590 69.020 89.080 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015726 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014489 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011226 0.00000