HEADER COMPLEX (SERINE PROTEASE/INHIBITOR) 03-MAR-95 1TBR TITLE CRYSTAL STRUCTURE OF INSECT DERIVED DOUBLE DOMAIN KAZAL INHIBITOR TITLE 2 RHODNIIN IN COMPLEX WITH THROMBIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: THROMBIN; COMPND 3 CHAIN: L, J; COMPND 4 EC: 3.4.21.5; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: THROMBIN; COMPND 7 CHAIN: H, K; COMPND 8 EC: 3.4.21.5; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: RHODNIIN; COMPND 11 CHAIN: R, S; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 ORGAN: PLASMA; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 8 ORGANISM_COMMON: CATTLE; SOURCE 9 ORGANISM_TAXID: 9913; SOURCE 10 ORGAN: PLASMA; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: RHODNIUS PROLIXUS; SOURCE 13 ORGANISM_TAXID: 13249; SOURCE 14 ORGAN: PLASMA; SOURCE 15 GENE: PRPTI; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PR2C; SOURCE 19 EXPRESSION_SYSTEM_GENE: PRPTI KEYWDS COMPLEX (SERINE PROTEASE-INHIBITOR), KAZAL-TYPE INHIBITOR, THROMBIN, KEYWDS 2 COMPLEX (SERINE PROTEASE-INHIBITOR) COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.VAN DE LOCHT,D.LAMBA,W.BODE REVDAT 4 13-JUL-11 1TBR 1 VERSN REVDAT 3 24-FEB-09 1TBR 1 VERSN REVDAT 2 01-APR-03 1TBR 1 JRNL REVDAT 1 14-OCT-96 1TBR 0 JRNL AUTH A.VAN DE LOCHT,D.LAMBA,M.BAUER,R.HUBER,T.FRIEDRICH,B.KROGER, JRNL AUTH 2 W.HOFFKEN,W.BODE JRNL TITL TWO HEADS ARE BETTER THAN ONE: CRYSTAL STRUCTURE OF THE JRNL TITL 2 INSECT DERIVED DOUBLE DOMAIN KAZAL INHIBITOR RHODNIIN IN JRNL TITL 3 COMPLEX WITH THROMBIN. JRNL REF EMBO J. V. 14 5149 1995 JRNL REFN ISSN 0261-4189 JRNL PMID 7489704 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.FRIEDRICH,B.KROGER,S.BIALOJAN,H.G.LEMAIRE,H.W.HOFFKEN, REMARK 1 AUTH 2 P.REUSCHENBACH,M.OTTE,J.DODT REMARK 1 TITL A KAZAL-TYPE INHIBITOR WITH THROMBIN SPECIFICITY FROM REMARK 1 TITL 2 RHODNIUS PROLIXUS REMARK 1 REF J.BIOL.CHEM. V. 268 16216 1993 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH W.BODE,D.TURK,A.KARSHIKOV REMARK 1 TITL THE REFINED 1.9-A X-RAY CRYSTAL STRUCTURE OF D-PHE-PRO-ARG REMARK 1 TITL 2 CHLOROMETHYLKETONE-INHIBITED HUMAN ALPHA-THROMBIN: STRUCTURE REMARK 1 TITL 3 ANALYSIS, OVERALL STRUCTURE, ELECTROSTATIC PROPERTIES, REMARK 1 TITL 4 DETAILED ACTIVE-SITE GEOMETRY, AND STRUCTURE-FUNCTION REMARK 1 TITL 5 RELATIONSHIPS REMARK 1 REF PROTEIN SCI. V. 1 426 1992 REMARK 1 REFN ISSN 0961-8368 REMARK 1 REFERENCE 3 REMARK 1 AUTH T.J.RYDEL,A.TULINSKY,W.BODE,R.HUBER REMARK 1 TITL REFINED STRUCTURE OF THE HIRUDIN-THROMBIN COMPLEX REMARK 1 REF J.MOL.BIOL. V. 221 583 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH M.G.GRUTTER,J.P.PRIESTLE,J.RAHUEL,H.GROSSENBACHER,W.BODE, REMARK 1 AUTH 2 J.HOFSTEENGE,S.R.STONE REMARK 1 TITL CRYSTAL STRUCTURE OF THE THROMBIN-HIRUDIN COMPLEX: A NOVEL REMARK 1 TITL 2 MODE OF SERINE PROTEASE INHIBITION REMARK 1 REF EMBO J. V. 9 2361 1990 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 5 REMARK 1 AUTH T.J.RYDEL,K.G.RAVICHANDRAN,A.TULINSKY,W.BODE,R.HUBER, REMARK 1 AUTH 2 C.ROITSCH,J.W.FENTON II REMARK 1 TITL THE STRUCTURE OF A COMPLEX OF RECOMBINANT HIRUDIN AND HUMAN REMARK 1 TITL 2 ALPHA-THROMBIN REMARK 1 REF SCIENCE V. 249 277 1990 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 6 REMARK 1 AUTH W.BODE,I.MAYR,U.BAUMANN,R.HUBER,S.R.STONE,J.HOFSTEENGE REMARK 1 TITL THE REFINED 1.9 A CRYSTAL STRUCTURE OF HUMAN ALPHA-THROMBIN: REMARK 1 TITL 2 INTERACTION WITH D-PHE-PRO-ARG CHLOROMETHYLKETONE AND REMARK 1 TITL 3 SIGNIFICANCE OF THE TYR-PRO-PRO-TRP INSERTION SEGMENT REMARK 1 REF EMBO J. V. 8 3467 1989 REMARK 1 REFN ISSN 0261-4189 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 30087 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6530 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.66 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 AN OCCUPANCY OF 0.0 SIGNIFIES AN ATOM THAT WAS NOT LOCATED REMARK 3 IN THE ELECTRON DENSITY MAPS. REMARK 4 REMARK 4 1TBR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JAN-94 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33844 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 999.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 2.640 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.36750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.14850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.36750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 56.14850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS ENTRY CONTAINS TWO THROMBIN MOLECULES AND TWO RHODNIIN REMARK 300 MOLECULES. THROMBIN IS CLEAVED BETWEEN RESIDUES 15 AND 16. REMARK 300 CHAIN IDENTIFIERS *L* AND *J* ARE USED FOR RESIDUES 1U - 15 REMARK 300 OF THROMBIN AND CHAIN IDENTIFIERS *H* AND *K* ARE USED FOR REMARK 300 RESIDUES 16 - 247 OF THROMBIN. CHAIN IDENTIFIERS *R* AND REMARK 300 *S* ARE USED FOR RHODNIIN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, J, K, R, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: J, K, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 THR L 1U REMARK 475 SER L 1T REMARK 475 GLU L 1S REMARK 475 ASP L 1R REMARK 475 HIS L 1Q REMARK 475 ALA H 149D REMARK 475 LEU H 245 REMARK 475 GLY H 246 REMARK 475 SER H 247 REMARK 475 THR J 1U REMARK 475 SER J 1T REMARK 475 GLU J 1S REMARK 475 ASP J 1R REMARK 475 HIS J 1Q REMARK 475 LEU K 245 REMARK 475 GLY K 246 REMARK 475 SER K 247 REMARK 475 GLU R 1 REMARK 475 GLY R 2 REMARK 475 GLY R 3 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS L 1I CB CG CD CE NZ REMARK 480 GLU L 14L CB CG CD OE1 OE2 REMARK 480 ARG L 15 O CB CG CD NE CZ NH1 REMARK 480 ARG L 15 NH2 OXT REMARK 480 SER H 37 CB OG REMARK 480 LYS H 87 CB CG CD CE NZ REMARK 480 GLU H 113 CB CG CD OE1 OE2 REMARK 480 GLN H 127 CB CG CD OE1 NE2 REMARK 480 THR H 149A CB OG1 CG2 REMARK 480 VAL H 149C CB CG1 CG2 REMARK 480 GLN H 151 CB CG CD OE1 NE2 REMARK 480 ARG H 244 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS K 87 CB CG CD CE NZ REMARK 480 GLU K 97A CB CG CD OE1 OE2 REMARK 480 GLN K 127 CB CG CD OE1 NE2 REMARK 480 THR K 149A CB OG1 CG2 REMARK 480 SER K 149B CB OG REMARK 480 VAL K 149C CB CG1 CG2 REMARK 480 ARG K 244 CB CG CD NE CZ NH1 NH2 REMARK 480 GLU R 4 CB CG CD OE1 OE2 REMARK 480 SER R 18 OG REMARK 480 ASP R 53 CB CG OD1 OD2 REMARK 480 GLU S 4 CB CG CD OE1 OE2 REMARK 480 SER S 18 CB OG REMARK 480 GLY S 20 N CA REMARK 480 GLU S 39 CB CG CD OE1 OE2 REMARK 480 GLU S 52 CB CG CD OE1 OE2 REMARK 480 THR S 103 C O CB OG1 CG2 OXT REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 42 CA - CB - SG ANGL. DEV. = 8.0 DEGREES REMARK 500 LEU H 53 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 VAL H 157 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 CYS H 182 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP L 1R -70.55 -77.38 REMARK 500 PHE L 7 -76.26 -135.37 REMARK 500 LEU H 41 -65.90 -100.10 REMARK 500 ALA H 44 -175.16 -174.22 REMARK 500 SER H 48 -169.61 -163.33 REMARK 500 TYR H 60A 85.13 -160.59 REMARK 500 PRO H 60C -8.76 -58.65 REMARK 500 ASN H 60G 101.12 -166.21 REMARK 500 HIS H 71 -51.20 -136.71 REMARK 500 ARG H 77A -35.65 -39.67 REMARK 500 VAL H 79 -31.57 -131.12 REMARK 500 ASN H 98 18.68 -152.38 REMARK 500 SER H 115 -158.02 -153.77 REMARK 500 THR H 149 97.09 41.18 REMARK 500 SER H 214 -70.00 -134.83 REMARK 500 LEU H 245 -76.40 -152.65 REMARK 500 SER J 1T -97.47 -63.72 REMARK 500 HIS J 1Q -37.62 160.76 REMARK 500 PHE J 7 -82.40 -131.27 REMARK 500 GLU J 14C -7.76 -55.70 REMARK 500 LEU K 41 -60.65 -105.82 REMARK 500 TYR K 60A 76.20 -159.66 REMARK 500 PRO K 60B -37.53 -39.30 REMARK 500 ASP K 60E -10.76 80.62 REMARK 500 ASN K 60G 74.08 -159.24 REMARK 500 HIS K 71 -47.26 -147.59 REMARK 500 VAL K 79 -38.66 -132.08 REMARK 500 ASN K 98 22.60 -151.38 REMARK 500 TRP K 148 93.45 -64.33 REMARK 500 THR K 149 142.30 -18.95 REMARK 500 THR K 149A 20.19 -154.44 REMARK 500 SER K 149B -106.43 -165.96 REMARK 500 VAL K 149C -80.71 -20.07 REMARK 500 ALA K 149D -140.31 -153.29 REMARK 500 ARG K 173 36.51 -94.31 REMARK 500 SER K 214 -66.28 -125.97 REMARK 500 ARG K 244 -67.31 -128.98 REMARK 500 HIS R 10 40.68 -83.57 REMARK 500 HIS R 13 59.67 -164.59 REMARK 500 PHE R 34 25.09 -76.68 REMARK 500 ASN R 35 40.05 -153.40 REMARK 500 LYS R 37 79.44 -112.37 REMARK 500 LYS R 66 86.50 -154.15 REMARK 500 SER R 88 -99.52 -145.50 REMARK 500 ARG R 102 46.29 -90.72 REMARK 500 HIS S 10 43.56 -78.37 REMARK 500 HIS S 13 56.93 -169.78 REMARK 500 SER S 18 -8.96 -55.42 REMARK 500 GLN S 58 -29.03 -34.85 REMARK 500 SER S 88 -102.86 -157.72 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL K 149C 24.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH R 119 REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHYMOTRYPSINOGEN NUMBERING (RATHER THAN SEQUENTIAL) SYSTEM REMARK 999 IS USED, BASED ON THE TOPOLOGICAL ALIGNMENT WITH THE REMARK 999 STRUCTURE OF CHYMOTRYPSINOGEN (H.BRANDSTETTER ET AL., 1992, REMARK 999 J.MOL.BIOL., V. 226, 1085). DBREF 1TBR L 1 15 UNP P00735 THRB_BOVIN 318 366 DBREF 1TBR H 16 247 UNP P00735 THRB_BOVIN 367 625 DBREF 1TBR J 1 15 UNP P00735 THRB_BOVIN 318 366 DBREF 1TBR K 16 247 UNP P00735 THRB_BOVIN 367 625 DBREF 1TBR R 1 103 UNP Q06684 THBI_RHOPR 1 103 DBREF 1TBR S 1 103 UNP Q06684 THBI_RHOPR 1 103 SEQRES 1 L 49 THR SER GLU ASP HIS PHE GLN PRO PHE PHE ASN GLU LYS SEQRES 2 L 49 THR PHE GLY ALA GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 3 L 49 LEU PHE GLU LYS LYS GLN VAL GLN ASP GLN THR GLU LYS SEQRES 4 L 49 GLU LEU PHE GLU SER TYR ILE GLU GLY ARG SEQRES 1 H 259 ILE VAL GLU GLY GLN ASP ALA GLU VAL GLY LEU SER PRO SEQRES 2 H 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 H 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 H 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 H 259 ASN PHE THR VAL ASP ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 H 259 HIS SER ARG THR ARG TYR GLU ARG LYS VAL GLU LYS ILE SEQRES 7 H 259 SER MET LEU ASP LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 H 259 TRP LYS GLU ASN LEU ASP ARG ASP ILE ALA LEU LEU LYS SEQRES 9 H 259 LEU LYS ARG PRO ILE GLU LEU SER ASP TYR ILE HIS PRO SEQRES 10 H 259 VAL CYS LEU PRO ASP LYS GLN THR ALA ALA LYS LEU LEU SEQRES 11 H 259 HIS ALA GLY PHE LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 H 259 ARG ARG GLU THR TRP THR THR SER VAL ALA GLU VAL GLN SEQRES 13 H 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO LEU VAL GLU SEQRES 14 H 259 ARG PRO VAL CYS LYS ALA SER THR ARG ILE ARG ILE THR SEQRES 15 H 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO GLY GLU GLY SEQRES 16 H 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 H 259 PHE VAL MET LYS SER PRO TYR ASN ASN ARG TRP TYR GLN SEQRES 18 H 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 H 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 H 259 LYS TRP ILE GLN LYS VAL ILE ASP ARG LEU GLY SER SEQRES 1 J 49 THR SER GLU ASP HIS PHE GLN PRO PHE PHE ASN GLU LYS SEQRES 2 J 49 THR PHE GLY ALA GLY GLU ALA ASP CYS GLY LEU ARG PRO SEQRES 3 J 49 LEU PHE GLU LYS LYS GLN VAL GLN ASP GLN THR GLU LYS SEQRES 4 J 49 GLU LEU PHE GLU SER TYR ILE GLU GLY ARG SEQRES 1 K 259 ILE VAL GLU GLY GLN ASP ALA GLU VAL GLY LEU SER PRO SEQRES 2 K 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 K 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 K 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 K 259 ASN PHE THR VAL ASP ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 K 259 HIS SER ARG THR ARG TYR GLU ARG LYS VAL GLU LYS ILE SEQRES 7 K 259 SER MET LEU ASP LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 K 259 TRP LYS GLU ASN LEU ASP ARG ASP ILE ALA LEU LEU LYS SEQRES 9 K 259 LEU LYS ARG PRO ILE GLU LEU SER ASP TYR ILE HIS PRO SEQRES 10 K 259 VAL CYS LEU PRO ASP LYS GLN THR ALA ALA LYS LEU LEU SEQRES 11 K 259 HIS ALA GLY PHE LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 K 259 ARG ARG GLU THR TRP THR THR SER VAL ALA GLU VAL GLN SEQRES 13 K 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO LEU VAL GLU SEQRES 14 K 259 ARG PRO VAL CYS LYS ALA SER THR ARG ILE ARG ILE THR SEQRES 15 K 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO GLY GLU GLY SEQRES 16 K 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO SEQRES 17 K 259 PHE VAL MET LYS SER PRO TYR ASN ASN ARG TRP TYR GLN SEQRES 18 K 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 K 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 K 259 LYS TRP ILE GLN LYS VAL ILE ASP ARG LEU GLY SER SEQRES 1 R 103 GLU GLY GLY GLU PRO CYS ALA CYS PRO HIS ALA LEU HIS SEQRES 2 R 103 ARG VAL CYS GLY SER ASP GLY GLU THR TYR SER ASN PRO SEQRES 3 R 103 CYS THR LEU ASN CYS ALA LYS PHE ASN GLY LYS PRO GLU SEQRES 4 R 103 LEU VAL LYS VAL HIS ASP GLY PRO CYS GLU PRO ASP GLU SEQRES 5 R 103 ASP GLU ASP VAL CYS GLN GLU CYS ASP GLY ASP GLU TYR SEQRES 6 R 103 LYS PRO VAL CYS GLY SER ASP ASP ILE THR TYR ASP ASN SEQRES 7 R 103 ASN CYS ARG LEU GLU CYS ALA SER ILE SER SER SER PRO SEQRES 8 R 103 GLY VAL GLU LEU LYS HIS GLU GLY PRO CYS ARG THR SEQRES 1 S 103 GLU GLY GLY GLU PRO CYS ALA CYS PRO HIS ALA LEU HIS SEQRES 2 S 103 ARG VAL CYS GLY SER ASP GLY GLU THR TYR SER ASN PRO SEQRES 3 S 103 CYS THR LEU ASN CYS ALA LYS PHE ASN GLY LYS PRO GLU SEQRES 4 S 103 LEU VAL LYS VAL HIS ASP GLY PRO CYS GLU PRO ASP GLU SEQRES 5 S 103 ASP GLU ASP VAL CYS GLN GLU CYS ASP GLY ASP GLU TYR SEQRES 6 S 103 LYS PRO VAL CYS GLY SER ASP ASP ILE THR TYR ASP ASN SEQRES 7 S 103 ASN CYS ARG LEU GLU CYS ALA SER ILE SER SER SER PRO SEQRES 8 S 103 GLY VAL GLU LEU LYS HIS GLU GLY PRO CYS ARG THR FORMUL 7 HOH *203(H2 O) HELIX 1 1 GLU L 1J PHE L 1G 1 4 HELIX 2 2 GLU L 1C ASP L 1A 5 3 HELIX 3 3 GLU L 8 LYS L 10 5 3 HELIX 4 4 GLU L 14C GLU L 14L 5 10 HELIX 5 5 ALA H 56 CYS H 58 5 3 HELIX 6 6 PRO H 60B TRP H 60D 5 3 HELIX 7 7 VAL H 61 ASP H 63 5 3 HELIX 8 8 LYS H 126 LEU H 129C 1 7 HELIX 9 9 ARG H 165 SER H 171 1 7 HELIX 10 10 VAL H 231 ASP H 243 1 13 HELIX 11 11 GLU J 1J PHE J 1G 1 4 HELIX 12 12 GLU J 1C ASP J 1A 5 3 HELIX 13 13 GLU J 8 LYS J 10 5 3 HELIX 14 14 GLU J 14C GLU J 14L 1 10 HELIX 15 15 ALA K 56 CYS K 58 5 3 HELIX 16 16 PRO K 60B TRP K 60D 5 3 HELIX 17 17 LYS K 126 LEU K 129C 1 7 HELIX 18 18 ARG K 165 SER K 171 1 7 HELIX 19 19 ARG K 233 LEU K 245 5 13 HELIX 20 20 PRO R 26 ASN R 35 1 10 HELIX 21 21 VAL R 56 GLU R 59 5 4 HELIX 22 22 ASN R 79 ILE R 87 1 9 HELIX 23 23 GLU S 4 CYS S 6 5 3 HELIX 24 24 PRO S 26 PHE S 34 1 9 HELIX 25 25 VAL S 56 CYS S 60 5 5 HELIX 26 26 ASN S 79 ILE S 87 1 9 SHEET 1 A 4 LYS H 81 MET H 84 0 SHEET 2 A 4 LEU H 64 ILE H 68 -1 N ILE H 68 O LYS H 81 SHEET 3 A 4 GLN H 30 ARG H 35 -1 N PHE H 34 O LEU H 65 SHEET 4 A 4 GLU H 39 SER H 45 -1 N ALA H 44 O VAL H 31 SHEET 1 B 3 TRP H 51 THR H 54 0 SHEET 2 B 3 ALA H 104 LEU H 108 -1 N LEU H 106 O VAL H 52 SHEET 3 B 3 LEU H 85 ILE H 90 -1 N TYR H 89 O LEU H 105 SHEET 1 C 2 LYS H 135 GLY H 140 0 SHEET 2 C 2 GLN H 156 PRO H 161 -1 N LEU H 160 O GLY H 136 SHEET 1 D 4 MET H 180 ALA H 183 0 SHEET 2 D 4 GLY H 226 HIS H 230 -1 N TYR H 228 O PHE H 181 SHEET 3 D 4 GLY H 211 GLU H 217 -1 N TRP H 215 O PHE H 227 SHEET 4 D 4 ALA R 7 PRO R 9 -1 N CYS R 8 O GLY H 216 SHEET 1 E 4 LYS K 81 SER K 83 0 SHEET 2 E 4 LEU K 64 ILE K 68 -1 N ILE K 68 O LYS K 81 SHEET 3 E 4 GLN K 30 ARG K 35 -1 N PHE K 34 O LEU K 65 SHEET 4 E 4 LEU K 40 SER K 45 -1 N ALA K 44 O VAL K 31 SHEET 1 F 3 TRP K 51 THR K 54 0 SHEET 2 F 3 ALA K 104 LEU K 108 -1 N LEU K 106 O VAL K 52 SHEET 3 F 3 LEU K 85 ILE K 90 -1 N TYR K 89 O LEU K 105 SHEET 1 G 2 LYS K 135 GLY K 140 0 SHEET 2 G 2 GLN K 156 PRO K 161 -1 N LEU K 160 O GLY K 136 SHEET 1 H 4 MET K 180 ALA K 183 0 SHEET 2 H 4 GLY K 226 HIS K 230 -1 N TYR K 228 O PHE K 181 SHEET 3 H 4 GLY K 211 GLU K 217 -1 N TRP K 215 O PHE K 227 SHEET 4 H 4 ALA S 7 PRO S 9 -1 N CYS S 8 O GLY K 216 SHEET 1 I 3 ILE R 74 TYR R 76 0 SHEET 2 I 3 VAL R 68 GLY R 70 -1 N GLY R 70 O ILE R 74 SHEET 3 I 3 LEU R 95 GLU R 98 -1 N HIS R 97 O CYS R 69 SHEET 1 J 3 GLU S 21 TYR S 23 0 SHEET 2 J 3 VAL S 15 GLY S 17 -1 N GLY S 17 O GLU S 21 SHEET 3 J 3 LYS S 42 ASP S 45 -1 N HIS S 44 O CYS S 16 SHEET 1 K 3 ILE S 74 TYR S 76 0 SHEET 2 K 3 VAL S 68 GLY S 70 -1 N GLY S 70 O ILE S 74 SHEET 3 K 3 LEU S 95 GLU S 98 -1 N HIS S 97 O CYS S 69 SHEET 1 L 2 PRO H 198 LYS H 202 0 SHEET 2 L 2 TRP H 207 ILE H 212 -1 N GLY H 211 O PHE H 199 SHEET 1 M 2 PRO K 198 LYS K 202 0 SHEET 2 M 2 TRP K 207 ILE K 212 -1 N GLY K 211 O PHE K 199 SHEET 1 N 2 VAL R 15 GLY R 17 0 SHEET 2 N 2 LYS R 42 ASP R 45 -1 N HIS R 44 O CYS R 16 SSBOND 1 CYS L 1 CYS H 122 1555 1555 2.03 SSBOND 2 CYS H 42 CYS H 58 1555 1555 2.04 SSBOND 3 CYS H 168 CYS H 182 1555 1555 2.02 SSBOND 4 CYS H 191 CYS H 220 1555 1555 2.03 SSBOND 5 CYS J 1 CYS K 122 1555 1555 2.03 SSBOND 6 CYS K 42 CYS K 58 1555 1555 2.03 SSBOND 7 CYS K 168 CYS K 182 1555 1555 2.04 SSBOND 8 CYS K 191 CYS K 220 1555 1555 2.03 SSBOND 9 CYS R 6 CYS R 31 1555 1555 2.03 SSBOND 10 CYS R 8 CYS R 27 1555 1555 2.02 SSBOND 11 CYS R 16 CYS R 48 1555 1555 2.03 SSBOND 12 CYS R 57 CYS R 84 1555 1555 2.21 SSBOND 13 CYS R 60 CYS R 80 1555 1555 2.02 SSBOND 14 CYS R 69 CYS R 101 1555 1555 2.02 SSBOND 15 CYS S 6 CYS S 31 1555 1555 2.03 SSBOND 16 CYS S 8 CYS S 27 1555 1555 2.02 SSBOND 17 CYS S 16 CYS S 48 1555 1555 2.04 SSBOND 18 CYS S 57 CYS S 84 1555 1555 2.28 SSBOND 19 CYS S 60 CYS S 80 1555 1555 2.01 SSBOND 20 CYS S 69 CYS S 101 1555 1555 2.02 CISPEP 1 SER H 37 PRO H 37A 0 -0.27 CISPEP 2 SER K 37 PRO K 37A 0 -0.19 CRYST1 114.735 112.297 92.069 90.00 94.97 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000026 0.000026 0.00000 ORIGX2 0.000000 1.000000 0.000026 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008716 0.000000 0.000758 0.00000 SCALE2 0.000000 0.008905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010902 0.00000