HEADER ANTIMICROBIAL PROTEIN 23-MAY-04 1TDP TITLE NMR SOLUTION STRUCTURE OF THE CARNOBACTERIOCIN B2 IMMUNITY PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARNOBACTERIOCIN B2 IMMUNITY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CARNOCIN CP52 IMMUNITY PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARNOBACTERIUM MALTAROMATICUM; SOURCE 3 ORGANISM_TAXID: 2751; SOURCE 4 GENE: CBIB2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMALC KEYWDS FOUR-HELIX BUNDLE, ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR T.SPRULES,K.E.KAWULKA,J.C.VEDERAS REVDAT 4 22-MAY-24 1TDP 1 REMARK REVDAT 3 02-MAR-22 1TDP 1 REMARK REVDAT 2 24-FEB-09 1TDP 1 VERSN REVDAT 1 28-SEP-04 1TDP 0 JRNL AUTH T.SPRULES,K.E.KAWULKA,J.C.VEDERAS JRNL TITL NMR SOLUTION STRUCTURE OF IMB2, A PROTEIN CONFERRING JRNL TITL 2 IMMUNITY TO ANTIMICROBIAL ACTIVITY OF THE TYPE IIA JRNL TITL 3 BACTERIOCIN, CARNOBACTERIOCIN B2 JRNL REF BIOCHEMISTRY V. 43 11740 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15362858 JRNL DOI 10.1021/BI048854+ REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CNS 1.1 REMARK 3 AUTHORS : BRUNGER, A.T., ADAMS, P.D., CLORE, G.M., DELANO, REMARK 3 W.L., GROS, P., GROSSE-KUNSTLEVE, R.W., JIANG, REMARK 3 J.S., KUSZEWSKI, J., NILGES, M., PANNU, N.S., READ, REMARK 3 R. J., RICE, L.M., SIMONSON, T., AND WARREN, G.L. REMARK 3 (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON 2118 NOE REMARK 3 -DERIVED DISTANCE RESTRAINTS, 84 HYDROGEN BONDS AND 130 DIHEDRAL REMARK 3 ANGLE RESTRAINTS. REMARK 4 REMARK 4 1TDP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022565. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : 20 MM SODIUM PHOSPHATE; 25 MM REMARK 210 NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM CBIB2 U-15N; 20 MM SODIUM REMARK 210 PHOSPHATE BUFFER; 25 MM NACL; 90% REMARK 210 H2O, 10%D2O; 0.8 MM CBIB2 U-15N, REMARK 210 13C; 20 MM SODIUM PHOSPHATE REMARK 210 BUFFER; 25 MM NACL; 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; HNHA; REMARK 210 3D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.2, NMRVIEW 5.0, CNS REMARK 210 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 15 H ASP A 18 1.36 REMARK 500 O ARG A 95 HG13 ILE A 99 1.57 REMARK 500 O ASP A 18 H VAL A 21 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 -158.56 -79.53 REMARK 500 1 ALA A 40 34.84 -80.77 REMARK 500 1 SER A 43 59.35 -94.72 REMARK 500 1 TYR A 62 -100.19 -58.42 REMARK 500 1 LEU A 63 -124.98 47.47 REMARK 500 1 HIS A 65 70.85 -119.77 REMARK 500 1 ARG A 67 -157.47 -155.64 REMARK 500 1 ILE A 68 -76.96 -104.02 REMARK 500 1 ILE A 69 88.69 114.83 REMARK 500 1 SER A 71 -71.29 11.12 REMARK 500 1 SER A 72 19.21 -63.36 REMARK 500 1 LEU A 74 -33.27 -161.94 REMARK 500 1 SER A 105 22.38 -163.08 REMARK 500 1 VAL A 106 86.91 8.61 REMARK 500 1 TYR A 110 30.60 -98.42 REMARK 500 2 ASP A 2 173.32 -52.60 REMARK 500 2 ALA A 40 40.23 -102.93 REMARK 500 2 SER A 55 47.86 -78.96 REMARK 500 2 ARG A 56 -46.83 171.20 REMARK 500 2 TYR A 62 67.61 176.23 REMARK 500 2 SER A 64 60.77 -109.35 REMARK 500 2 HIS A 65 -70.15 67.36 REMARK 500 2 LYS A 66 31.22 -168.83 REMARK 500 2 PRO A 70 43.99 -84.88 REMARK 500 2 SER A 71 -50.64 67.19 REMARK 500 2 SER A 72 19.36 -63.28 REMARK 500 2 LEU A 74 -32.13 -137.41 REMARK 500 2 PRO A 107 -139.36 -63.02 REMARK 500 2 ILE A 109 108.81 154.26 REMARK 500 3 ASP A 2 -171.06 56.39 REMARK 500 3 ASP A 18 108.50 -56.68 REMARK 500 3 LEU A 63 -77.97 -41.25 REMARK 500 3 SER A 64 52.98 -109.77 REMARK 500 3 ARG A 67 -83.36 171.95 REMARK 500 3 ILE A 68 -176.32 -177.67 REMARK 500 3 SER A 72 18.71 -64.16 REMARK 500 3 PRO A 107 -139.36 -67.16 REMARK 500 3 ILE A 109 93.00 -160.58 REMARK 500 4 ASP A 2 -178.20 58.08 REMARK 500 4 ASN A 24 68.84 -102.28 REMARK 500 4 ALA A 40 31.60 -95.31 REMARK 500 4 SER A 43 73.03 -102.28 REMARK 500 4 ARG A 56 -28.70 142.66 REMARK 500 4 SER A 59 -67.17 178.21 REMARK 500 4 TYR A 62 -43.72 -160.96 REMARK 500 4 LEU A 63 107.41 -49.34 REMARK 500 4 SER A 64 62.09 -104.06 REMARK 500 4 HIS A 65 95.52 66.50 REMARK 500 4 ILE A 68 -123.17 -63.09 REMARK 500 4 ILE A 69 142.57 64.19 REMARK 500 REMARK 500 THIS ENTRY HAS 211 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1TDP A 1 111 UNP P38582 CB2I_CARPI 1 111 SEQRES 1 A 111 MET ASP ILE LYS SER GLN THR LEU TYR LEU ASN LEU SER SEQRES 2 A 111 GLU ALA TYR LYS ASP PRO GLU VAL LYS ALA ASN GLU PHE SEQRES 3 A 111 LEU SER LYS LEU VAL VAL GLN CYS ALA GLY LYS LEU THR SEQRES 4 A 111 ALA SER ASN SER GLU ASN SER TYR ILE GLU VAL ILE SER SEQRES 5 A 111 LEU LEU SER ARG GLY ILE SER SER TYR TYR LEU SER HIS SEQRES 6 A 111 LYS ARG ILE ILE PRO SER SER MET LEU THR ILE TYR THR SEQRES 7 A 111 GLN ILE GLN LYS ASP ILE LYS ASN GLY ASN ILE ASP THR SEQRES 8 A 111 GLU LYS LEU ARG LYS TYR GLU ILE ALA LYS GLY LEU MET SEQRES 9 A 111 SER VAL PRO TYR ILE TYR PHE HELIX 1 1 ILE A 3 LYS A 17 1 15 HELIX 2 2 ASP A 18 ALA A 23 1 6 HELIX 3 3 ASN A 24 ALA A 40 1 17 HELIX 4 4 SER A 43 TYR A 61 1 19 HELIX 5 5 PRO A 70 MET A 73 5 4 HELIX 6 6 LEU A 74 ASN A 86 1 13 HELIX 7 7 ASP A 90 ALA A 100 1 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1