HEADER TRANSCRIPTION 26-MAY-04 1TF1 TITLE CRYSTAL STRUCTURE OF THE E. COLI GLYOXYLATE REGULATORY PROTEIN LIGAND TITLE 2 BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEGATIVE REGULATOR OF ALLANTOIN AND GLYOXYLATE UTILIZATION COMPND 3 OPERONS; COMPND 4 CHAIN: A, B, C, D; COMPND 5 FRAGMENT: LIGAND BINDING DOMAIN; COMPND 6 SYNONYM: TRANSCRIPTIONAL REGULATOR ALLR, APC5051; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: GLXA3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MIDWEST CENTER FOR STRUCTURAL GENOMICS, GLCR, LIGAND BINDING DOMAIN, KEYWDS 2 TRANSCRIPTIONAL REGULATOR, PSI, PROTEIN STRUCTURE INITIATIVE, MCSG, KEYWDS 3 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,T.SKARINA,M.KUDRYTSKA,A.JOACHIMIAK,C.ARROWSMITH,A.EDWARDS, AUTHOR 2 A.SAVCHENKO,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 6 23-AUG-23 1TF1 1 SEQADV REVDAT 5 31-JAN-18 1TF1 1 REMARK REVDAT 4 24-FEB-09 1TF1 1 VERSN REVDAT 3 18-JAN-05 1TF1 1 AUTHOR KEYWDS REMARK REVDAT 2 31-AUG-04 1TF1 1 SOURCE REVDAT 1 03-AUG-04 1TF1 0 JRNL AUTH J.R.WALKER,S.ALTAMENTOVA,A.EZERSKY,G.LORCA,T.SKARINA, JRNL AUTH 2 M.KUDRITSKA,L.J.BALL,A.BOCHKAREV,A.SAVCHENKO JRNL TITL STRUCTURAL AND BIOCHEMICAL STUDY OF EFFECTOR MOLECULE JRNL TITL 2 RECOGNITION BY THE E.COLI GLYOXYLATE AND ALLANTOIN JRNL TITL 3 UTILIZATION REGULATORY PROTEIN ALLR. JRNL REF J.MOL.BIOL. V. 358 810 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16546208 JRNL DOI 10.1016/J.JMB.2006.02.034 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.G.ZHANG,Y.KIM,T.SKARINA,S.BEASLEY,R.LASKOWSKI, REMARK 1 AUTH 2 C.ARROWSMITH,A.EDWARDS,A.JOACHIMIAK,A.SAVCHENKO REMARK 1 TITL CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA 0065, A MEMBER OF REMARK 1 TITL 2 THE ICLR TRANSCRIPTIONAL FACTOR FAMILY REMARK 1 REF J.BIOL.CHEM. V. 277 19183 2002 REMARK 1 REFN ISSN 0021-9258 REMARK 1 DOI 10.1074/JBC.M112171200 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.R.WALKER,L.EVDOKIMOVA,R.G.ZHANG,A.BOCHKAREV,A.JOACHIMIAK, REMARK 1 AUTH 2 C.ARROWSMITH,A.EDWARDS,A.SAVCHENKO REMARK 1 TITL STRUCTURAL ANALYSES OF THE LIGAND BINDING SITES OF THE ICLR REMARK 1 TITL 2 FAMILY OF TRANSCRIPTIONAL REGULATORS REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2980696.700 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 59563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3033 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9374 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 529 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5457 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 595 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.76000 REMARK 3 B22 (A**2) : -10.08000 REMARK 3 B33 (A**2) : 8.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.200 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.410 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.020 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.480 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.550 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 41.87 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TF1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022597. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CONFOCAL MULTILAYER OPTICS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59628 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.27700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 1.1 REMARK 200 STARTING MODEL: PDB ENTRY 1T9L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MGCL2, PEG3350, TRIS PH 8.5, ETHYLENE REMARK 280 GLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 100K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.24400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.24400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.39800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.76900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.39800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.76900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.24400 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.39800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.76900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.24400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.39800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.76900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE REMARK 300 GEL FILTRATION STUDIES SHOW THAT THE GLCR LIGAND REMARK 300 BINDING DOMAIN FORMS A MONOMER IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 HIS A 185 REMARK 465 PRO A 186 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 SER B -1 REMARK 465 SER B 0 REMARK 465 GLY B 1 REMARK 465 ARG B 2 REMARK 465 GLU B 3 REMARK 465 ASN B 4 REMARK 465 LEU B 5 REMARK 465 ALA B 184 REMARK 465 HIS B 185 REMARK 465 PRO B 186 REMARK 465 MET C -11 REMARK 465 GLY C -10 REMARK 465 SER C -9 REMARK 465 SER C -8 REMARK 465 HIS C -7 REMARK 465 HIS C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 SER C -1 REMARK 465 SER C 0 REMARK 465 GLY C 1 REMARK 465 ARG C 2 REMARK 465 GLU C 3 REMARK 465 ASN C 4 REMARK 465 ALA C 184 REMARK 465 HIS C 185 REMARK 465 PRO C 186 REMARK 465 MET D -11 REMARK 465 GLY D -10 REMARK 465 SER D -9 REMARK 465 SER D -8 REMARK 465 HIS D -7 REMARK 465 HIS D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 SER D -1 REMARK 465 SER D 0 REMARK 465 ALA D 184 REMARK 465 HIS D 185 REMARK 465 PRO D 186 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 132 CB CYS A 132 SG -0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 57 48.35 -155.20 REMARK 500 ASN B 40 25.84 49.97 REMARK 500 ARG B 55 -179.87 -172.51 REMARK 500 CYS B 57 45.16 -149.16 REMARK 500 TYR C 6 160.11 -25.38 REMARK 500 ARG C 55 -179.11 -172.42 REMARK 500 CYS C 57 47.92 -150.18 REMARK 500 ARG D 55 -174.41 -173.38 REMARK 500 CYS D 57 50.50 -141.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T9L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE E. COLI GLYOXYLATE REGULATORY PROTEIN REMARK 900 LIGAND BINDING DOMAIN COMPLEXED WITH GLYOXYLATE REMARK 900 RELATED ID: 1TD5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN OF E. COLI ICLR REMARK 900 RELATED ID: 1MKM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA 0065, A MEMBER OF THE ICLR REMARK 900 TRANSCRIPTIONAL FACTOR FAMILY REMARK 900 RELATED ID: APC5051 RELATED DB: TARGETDB DBREF 1TF1 A 12 186 UNP P0ACN4 ALLR_ECOLI 97 271 DBREF 1TF1 B 12 186 UNP P0ACN4 ALLR_ECOLI 97 271 DBREF 1TF1 C 12 186 UNP P0ACN4 ALLR_ECOLI 97 271 DBREF 1TF1 D 12 186 UNP P0ACN4 ALLR_ECOLI 97 271 SEQADV 1TF1 MET A -11 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 GLY A -10 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER A -9 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER A -8 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS A -7 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS A -6 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS A -5 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS A -4 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS A -3 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS A -2 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER A -1 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 SER A 0 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLY A 1 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 ARG A 2 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLU A 3 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 ASN A 4 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 LEU A 5 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 TYR A 6 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 PHE A 7 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLN A 8 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLY A 9 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 HIS A 10 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 MET A 11 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 MET B -11 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 GLY B -10 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER B -9 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER B -8 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS B -7 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS B -6 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS B -5 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS B -4 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS B -3 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS B -2 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER B -1 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 SER B 0 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLY B 1 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 ARG B 2 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLU B 3 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 ASN B 4 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 LEU B 5 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 TYR B 6 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 PHE B 7 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLN B 8 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLY B 9 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 HIS B 10 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 MET B 11 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 MET C -11 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 GLY C -10 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER C -9 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER C -8 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS C -7 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS C -6 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS C -5 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS C -4 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS C -3 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS C -2 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER C -1 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 SER C 0 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLY C 1 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 ARG C 2 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLU C 3 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 ASN C 4 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 LEU C 5 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 TYR C 6 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 PHE C 7 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLN C 8 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLY C 9 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 HIS C 10 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 MET C 11 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 MET D -11 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 GLY D -10 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER D -9 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER D -8 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS D -7 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS D -6 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS D -5 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS D -4 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS D -3 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 HIS D -2 UNP P0ACN4 EXPRESSION TAG SEQADV 1TF1 SER D -1 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 SER D 0 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLY D 1 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 ARG D 2 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLU D 3 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 ASN D 4 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 LEU D 5 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 TYR D 6 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 PHE D 7 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLN D 8 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 GLY D 9 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 HIS D 10 UNP P0ACN4 CLONING ARTIFACT SEQADV 1TF1 MET D 11 UNP P0ACN4 CLONING ARTIFACT SEQRES 1 A 198 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 198 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASP VAL LEU SEQRES 3 A 198 SER VAL ALA GLY PRO PHE MET ARG ARG LEU MET LEU LEU SEQRES 4 A 198 SER GLY GLU THR VAL ASN VAL ALA ILE ARG ASN GLY ASN SEQRES 5 A 198 GLU ALA VAL LEU ILE GLY GLN LEU GLU CYS LYS SER MET SEQRES 6 A 198 VAL ARG MET CYS ALA PRO LEU GLY SER ARG LEU PRO LEU SEQRES 7 A 198 HIS ALA SER GLY ALA GLY LYS ALA LEU LEU TYR PRO LEU SEQRES 8 A 198 ALA GLU GLU GLU LEU MET SER ILE ILE LEU GLN THR GLY SEQRES 9 A 198 LEU GLN GLN PHE THR PRO THR THR LEU VAL ASP MET PRO SEQRES 10 A 198 THR LEU LEU LYS ASP LEU GLU GLN ALA ARG GLU LEU GLY SEQRES 11 A 198 TYR THR VAL ASP LYS GLU GLU HIS VAL VAL GLY LEU ASN SEQRES 12 A 198 CYS ILE ALA SER ALA ILE TYR ASP ASP VAL GLY SER VAL SEQRES 13 A 198 VAL ALA ALA ILE SER ILE SER GLY PRO SER SER ARG LEU SEQRES 14 A 198 THR GLU ASP ARG PHE VAL SER GLN GLY GLU LEU VAL ARG SEQRES 15 A 198 ASP THR ALA ARG ASP ILE SER THR ALA LEU GLY LEU LYS SEQRES 16 A 198 ALA HIS PRO SEQRES 1 B 198 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 198 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASP VAL LEU SEQRES 3 B 198 SER VAL ALA GLY PRO PHE MET ARG ARG LEU MET LEU LEU SEQRES 4 B 198 SER GLY GLU THR VAL ASN VAL ALA ILE ARG ASN GLY ASN SEQRES 5 B 198 GLU ALA VAL LEU ILE GLY GLN LEU GLU CYS LYS SER MET SEQRES 6 B 198 VAL ARG MET CYS ALA PRO LEU GLY SER ARG LEU PRO LEU SEQRES 7 B 198 HIS ALA SER GLY ALA GLY LYS ALA LEU LEU TYR PRO LEU SEQRES 8 B 198 ALA GLU GLU GLU LEU MET SER ILE ILE LEU GLN THR GLY SEQRES 9 B 198 LEU GLN GLN PHE THR PRO THR THR LEU VAL ASP MET PRO SEQRES 10 B 198 THR LEU LEU LYS ASP LEU GLU GLN ALA ARG GLU LEU GLY SEQRES 11 B 198 TYR THR VAL ASP LYS GLU GLU HIS VAL VAL GLY LEU ASN SEQRES 12 B 198 CYS ILE ALA SER ALA ILE TYR ASP ASP VAL GLY SER VAL SEQRES 13 B 198 VAL ALA ALA ILE SER ILE SER GLY PRO SER SER ARG LEU SEQRES 14 B 198 THR GLU ASP ARG PHE VAL SER GLN GLY GLU LEU VAL ARG SEQRES 15 B 198 ASP THR ALA ARG ASP ILE SER THR ALA LEU GLY LEU LYS SEQRES 16 B 198 ALA HIS PRO SEQRES 1 C 198 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 198 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASP VAL LEU SEQRES 3 C 198 SER VAL ALA GLY PRO PHE MET ARG ARG LEU MET LEU LEU SEQRES 4 C 198 SER GLY GLU THR VAL ASN VAL ALA ILE ARG ASN GLY ASN SEQRES 5 C 198 GLU ALA VAL LEU ILE GLY GLN LEU GLU CYS LYS SER MET SEQRES 6 C 198 VAL ARG MET CYS ALA PRO LEU GLY SER ARG LEU PRO LEU SEQRES 7 C 198 HIS ALA SER GLY ALA GLY LYS ALA LEU LEU TYR PRO LEU SEQRES 8 C 198 ALA GLU GLU GLU LEU MET SER ILE ILE LEU GLN THR GLY SEQRES 9 C 198 LEU GLN GLN PHE THR PRO THR THR LEU VAL ASP MET PRO SEQRES 10 C 198 THR LEU LEU LYS ASP LEU GLU GLN ALA ARG GLU LEU GLY SEQRES 11 C 198 TYR THR VAL ASP LYS GLU GLU HIS VAL VAL GLY LEU ASN SEQRES 12 C 198 CYS ILE ALA SER ALA ILE TYR ASP ASP VAL GLY SER VAL SEQRES 13 C 198 VAL ALA ALA ILE SER ILE SER GLY PRO SER SER ARG LEU SEQRES 14 C 198 THR GLU ASP ARG PHE VAL SER GLN GLY GLU LEU VAL ARG SEQRES 15 C 198 ASP THR ALA ARG ASP ILE SER THR ALA LEU GLY LEU LYS SEQRES 16 C 198 ALA HIS PRO SEQRES 1 D 198 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 D 198 ARG GLU ASN LEU TYR PHE GLN GLY HIS MET ASP VAL LEU SEQRES 3 D 198 SER VAL ALA GLY PRO PHE MET ARG ARG LEU MET LEU LEU SEQRES 4 D 198 SER GLY GLU THR VAL ASN VAL ALA ILE ARG ASN GLY ASN SEQRES 5 D 198 GLU ALA VAL LEU ILE GLY GLN LEU GLU CYS LYS SER MET SEQRES 6 D 198 VAL ARG MET CYS ALA PRO LEU GLY SER ARG LEU PRO LEU SEQRES 7 D 198 HIS ALA SER GLY ALA GLY LYS ALA LEU LEU TYR PRO LEU SEQRES 8 D 198 ALA GLU GLU GLU LEU MET SER ILE ILE LEU GLN THR GLY SEQRES 9 D 198 LEU GLN GLN PHE THR PRO THR THR LEU VAL ASP MET PRO SEQRES 10 D 198 THR LEU LEU LYS ASP LEU GLU GLN ALA ARG GLU LEU GLY SEQRES 11 D 198 TYR THR VAL ASP LYS GLU GLU HIS VAL VAL GLY LEU ASN SEQRES 12 D 198 CYS ILE ALA SER ALA ILE TYR ASP ASP VAL GLY SER VAL SEQRES 13 D 198 VAL ALA ALA ILE SER ILE SER GLY PRO SER SER ARG LEU SEQRES 14 D 198 THR GLU ASP ARG PHE VAL SER GLN GLY GLU LEU VAL ARG SEQRES 15 D 198 ASP THR ALA ARG ASP ILE SER THR ALA LEU GLY LEU LYS SEQRES 16 D 198 ALA HIS PRO FORMUL 5 HOH *595(H2 O) HELIX 1 1 PHE A 7 GLY A 29 1 23 HELIX 2 2 SER A 69 TYR A 77 1 9 HELIX 3 3 ALA A 80 GLY A 92 1 13 HELIX 4 4 ASP A 103 GLY A 118 1 16 HELIX 5 5 THR A 158 ASP A 160 5 3 HELIX 6 6 ARG A 161 GLY A 181 1 21 HELIX 7 7 TYR B 6 GLY B 29 1 24 HELIX 8 8 SER B 69 TYR B 77 1 9 HELIX 9 9 ALA B 80 GLY B 92 1 13 HELIX 10 10 ASP B 103 GLY B 118 1 16 HELIX 11 11 THR B 158 ASP B 160 5 3 HELIX 12 12 ARG B 161 LYS B 183 1 23 HELIX 13 13 TYR C 6 GLY C 29 1 24 HELIX 14 14 SER C 69 TYR C 77 1 9 HELIX 15 15 ALA C 80 GLY C 92 1 13 HELIX 16 16 ASP C 103 GLY C 118 1 16 HELIX 17 17 THR C 158 ASP C 160 5 3 HELIX 18 18 ARG C 161 LYS C 183 1 23 HELIX 19 19 PHE D 7 GLY D 29 1 23 HELIX 20 20 SER D 69 TYR D 77 1 9 HELIX 21 21 ALA D 80 GLY D 92 1 13 HELIX 22 22 ASP D 103 GLY D 118 1 16 HELIX 23 23 THR D 158 ASP D 160 5 3 HELIX 24 24 ARG D 161 GLY D 181 1 21 SHEET 1 A 6 ARG A 63 PRO A 65 0 SHEET 2 A 6 GLU A 41 LEU A 48 -1 N ALA A 42 O LEU A 64 SHEET 3 A 6 THR A 31 ASN A 38 -1 N VAL A 34 O ILE A 45 SHEET 4 A 6 VAL A 144 PRO A 153 -1 O SER A 149 N ASN A 33 SHEET 5 A 6 LEU A 130 TYR A 138 -1 N ILE A 137 O ALA A 146 SHEET 6 A 6 THR A 120 LYS A 123 -1 N ASP A 122 O CYS A 132 SHEET 1 B 2 VAL A 54 MET A 56 0 SHEET 2 B 2 VAL B 54 MET B 56 -1 O ARG B 55 N ARG A 55 SHEET 1 C 6 ARG B 63 LEU B 64 0 SHEET 2 C 6 GLU B 41 LEU B 48 -1 N ALA B 42 O LEU B 64 SHEET 3 C 6 THR B 31 ASN B 38 -1 N ILE B 36 O VAL B 43 SHEET 4 C 6 VAL B 144 PRO B 153 -1 O SER B 149 N ASN B 33 SHEET 5 C 6 LEU B 130 TYR B 138 -1 N ILE B 137 O ALA B 146 SHEET 6 C 6 THR B 120 LYS B 123 -1 N THR B 120 O ALA B 134 SHEET 1 D 6 ARG C 63 PRO C 65 0 SHEET 2 D 6 GLU C 41 LEU C 48 -1 N ALA C 42 O LEU C 64 SHEET 3 D 6 THR C 31 ASN C 38 -1 N ILE C 36 O VAL C 43 SHEET 4 D 6 VAL C 144 PRO C 153 -1 O ALA C 147 N ALA C 35 SHEET 5 D 6 LEU C 130 TYR C 138 -1 N ASN C 131 O GLY C 152 SHEET 6 D 6 THR C 120 LYS C 123 -1 N THR C 120 O ALA C 134 SHEET 1 E 6 ARG D 63 LEU D 64 0 SHEET 2 E 6 GLU D 41 LEU D 48 -1 N ALA D 42 O LEU D 64 SHEET 3 E 6 THR D 31 ASN D 38 -1 N VAL D 32 O LEU D 48 SHEET 4 E 6 VAL D 144 PRO D 153 -1 O SER D 149 N ASN D 33 SHEET 5 E 6 LEU D 130 TYR D 138 -1 N ILE D 137 O VAL D 145 SHEET 6 E 6 THR D 120 LYS D 123 -1 N THR D 120 O ALA D 134 CRYST1 92.796 97.538 144.488 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010776 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006921 0.00000