HEADER CALCIUM-BINDING PROTEIN 02-JUN-04 1TIZ TITLE SOLUTION STRUCTURE OF A CALMODULIN-LIKE CALCIUM-BINDING DOMAIN FROM TITLE 2 ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-RELATED PROTEIN, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HELIX-TURN-HELIX, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, CESG, KEYWDS 3 CALCIUM-BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.SONG,Q.ZHAO,S.THAO,R.O.FREDERICK,J.L.MARKLEY,CENTER FOR EUKARYOTIC AUTHOR 2 STRUCTURAL GENOMICS (CESG) REVDAT 6 02-MAR-22 1TIZ 1 REMARK SEQADV REVDAT 5 24-FEB-09 1TIZ 1 VERSN REVDAT 4 12-FEB-08 1TIZ 1 REMARK REVDAT 3 01-FEB-05 1TIZ 1 AUTHOR KEYWDS REMARK REVDAT 2 18-JAN-05 1TIZ 1 JRNL REVDAT 1 10-AUG-04 1TIZ 0 JRNL AUTH J.SONG,Q.ZHAO,S.THAO,R.O.FREDERICK,J.L.MARKLEY JRNL TITL LETTER TO THE EDITOR: SOLUTION STRUCTURE OF A JRNL TITL 2 CALMODULIN-LIKE CALCIUM-BINDING DOMAIN FROM ARABIDOPSIS JRNL TITL 3 THALIANA JRNL REF J.BIOMOL.NMR V. 30 451 2004 JRNL REFN ISSN 0925-2738 JRNL PMID 15630565 JRNL DOI 10.1007/S10858-004-5356-7 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.2, XPLOR-NIH 2.0.6 REMARK 3 AUTHORS : C.D.SCHWIETERS,J.J.KUSZEWSKI,N.TJANDRA,G.M.CLORE REMARK 3 (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS FIRST CALCULATED REMARK 3 USING TORSION ANGLE DYNAMICS, AND LATER REFINED USING SIMULATED REMARK 3 ANNEALING AND MOLECULAR DYNAMICS REMARK 4 REMARK 4 1TIZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022669. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.2 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 5 MM DTT, 20 MM BIS-TRIS, 5MM REMARK 210 CA2+, 1MM DSS, 0.02% NAN3, 1 MM REMARK 210 PROTEIN REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1, SPARKY 3.72, CYANA REMARK 210 1.0.5 REMARK 210 METHOD USED : SIMULATED ANNEALING MOLECULAR REMARK 210 DYNAMICS TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 3D REMARK 210 TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 LEU A 67 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 18 H LEU A 54 1.36 REMARK 500 HD22 ASN A 13 O LYS A 17 1.49 REMARK 500 O PHE A 42 H ILE A 46 1.50 REMARK 500 O ILE A 63 H MET A 66 1.53 REMARK 500 O PHE A 43 H ASP A 47 1.55 REMARK 500 O PHE A 10 H LYS A 12 1.59 REMARK 500 O PHE A 10 N LYS A 12 2.08 REMARK 500 O LEU A 18 N LEU A 54 2.19 REMARK 500 O GLU A 8 OD1 ASP A 11 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 26.35 -77.73 REMARK 500 1 ASP A 11 77.71 -51.13 REMARK 500 1 LYS A 14 51.28 25.70 REMARK 500 1 SER A 31 70.15 -113.21 REMARK 500 1 ASP A 47 82.06 -64.81 REMARK 500 1 LYS A 65 -12.86 -49.92 REMARK 500 2 SER A 2 23.73 -169.22 REMARK 500 2 ASP A 11 78.47 -51.85 REMARK 500 2 LYS A 14 48.84 26.24 REMARK 500 2 SER A 31 73.79 -110.31 REMARK 500 2 ASP A 47 77.56 -67.84 REMARK 500 2 LYS A 65 -6.74 -56.19 REMARK 500 3 ASP A 11 80.32 -50.76 REMARK 500 3 LYS A 14 49.88 26.15 REMARK 500 3 SER A 31 70.13 -111.34 REMARK 500 3 ASP A 47 76.83 -67.12 REMARK 500 3 LYS A 65 -13.61 -49.25 REMARK 500 4 ASP A 11 79.92 -54.21 REMARK 500 4 LYS A 14 51.14 26.84 REMARK 500 4 SER A 31 70.88 -110.71 REMARK 500 4 ASP A 47 80.82 -65.11 REMARK 500 5 SER A 2 14.72 52.73 REMARK 500 5 ASP A 11 80.42 -53.49 REMARK 500 5 LYS A 14 49.57 26.08 REMARK 500 5 SER A 31 69.86 -114.28 REMARK 500 5 ASP A 47 79.44 -68.01 REMARK 500 5 LYS A 65 -9.99 -53.86 REMARK 500 6 ASP A 11 77.30 -49.21 REMARK 500 6 LYS A 14 51.02 26.92 REMARK 500 6 ASP A 47 80.41 -66.19 REMARK 500 6 LYS A 65 -14.29 -47.59 REMARK 500 6 MET A 66 -167.67 -162.54 REMARK 500 7 ASP A 11 76.96 -47.44 REMARK 500 7 LYS A 14 49.76 25.93 REMARK 500 7 SER A 31 71.38 -112.63 REMARK 500 7 ASP A 47 79.20 -67.08 REMARK 500 7 LYS A 65 -7.25 -55.39 REMARK 500 8 SER A 2 15.89 48.87 REMARK 500 8 ASP A 11 78.11 -50.30 REMARK 500 8 LYS A 14 52.02 26.84 REMARK 500 8 SER A 31 69.80 -116.19 REMARK 500 8 PRO A 32 -19.99 -49.61 REMARK 500 8 ASP A 47 81.18 -66.29 REMARK 500 8 LYS A 65 -15.41 -48.08 REMARK 500 8 MET A 66 -166.12 -162.54 REMARK 500 9 SER A 2 32.85 -74.65 REMARK 500 9 ASP A 11 77.36 -50.95 REMARK 500 9 LYS A 14 50.22 25.16 REMARK 500 9 SER A 31 69.05 -112.19 REMARK 500 9 ASP A 47 78.62 -66.57 REMARK 500 REMARK 500 THIS ENTRY HAS 113 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6209 RELATED DB: BMRB REMARK 900 RELATED ID: GO.33909 RELATED DB: TARGETDB DBREF 1TIZ A 2 67 UNP Q9SRP5 CALL2_ARATH 2 67 SEQADV 1TIZ SER A 1 UNP Q9SRP5 CLONING ARTIFACT SEQRES 1 A 67 SER SER ALA LYS ARG VAL PHE GLU LYS PHE ASP LYS ASN SEQRES 2 A 67 LYS ASP GLY LYS LEU SER LEU ASP GLU PHE ARG GLU VAL SEQRES 3 A 67 ALA LEU ALA PHE SER PRO TYR PHE THR GLN GLU ASP ILE SEQRES 4 A 67 VAL LYS PHE PHE GLU GLU ILE ASP VAL ASP GLY ASN GLY SEQRES 5 A 67 GLU LEU ASN ALA ASP GLU PHE THR SER CYS ILE GLU LYS SEQRES 6 A 67 MET LEU HELIX 1 1 SER A 2 ASP A 11 1 10 HELIX 2 2 LEU A 20 PHE A 30 1 11 HELIX 3 3 THR A 35 ASP A 47 1 13 HELIX 4 4 ASN A 55 LYS A 65 1 11 SHEET 1 A 2 LEU A 18 SER A 19 0 SHEET 2 A 2 GLU A 53 LEU A 54 -1 O LEU A 54 N LEU A 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1