HEADER HYDROLASE 04-JUN-04 1TJC TITLE CRYSTAL STRUCTURE OF PEPTIDE-SUBSTRATE-BINDING DOMAIN OF HUMAN TYPE I TITLE 2 COLLAGEN PROLYL 4-HYDROXYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLYL 4-HYDROXYLASE ALPHA-1 SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PEPTIDE-SUBSTRATE-BINDING DOMAIN; COMPND 5 SYNONYM: 4-PH ALPHA-1, PROCOLLAGEN-PROLINE,2-OXOGLUTARATE-4- COMPND 6 DIOXYGENASE ALPHA-1 SUBUNIT; COMPND 7 EC: 1.14.11.2; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: P4HA1, P4HA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TPR, HELICAL BUNDLE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.PEKKALA,R.HIETA,U.BERGMANN,K.I.KIVIRIKKO,R.K.WIERENGA,J.MYLLYHARJU REVDAT 7 14-FEB-24 1TJC 1 REMARK REVDAT 6 27-OCT-21 1TJC 1 SEQADV REVDAT 5 11-OCT-17 1TJC 1 REMARK REVDAT 4 13-JUL-11 1TJC 1 VERSN REVDAT 3 24-FEB-09 1TJC 1 VERSN REVDAT 2 14-DEC-04 1TJC 1 JRNL REVDAT 1 12-OCT-04 1TJC 0 JRNL AUTH M.PEKKALA,R.HIETA,U.BERGMANN,K.I.KIVIRIKKO,R.K.WIERENGA, JRNL AUTH 2 J.MYLLYHARJU JRNL TITL THE PEPTIDE-SUBSTRATE-BINDING DOMAIN OF COLLAGEN PROLYL JRNL TITL 2 4-HYDROXYLASES IS A TETRATRICOPEPTIDE REPEAT DOMAIN WITH JRNL TITL 3 FUNCTIONAL AROMATIC RESIDUES. JRNL REF J.BIOL.CHEM. V. 279 52255 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15456751 JRNL DOI 10.1074/JBC.M410007200 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15369 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 821 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1126 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1562 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 52.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.50000 REMARK 3 B22 (A**2) : 4.50000 REMARK 3 B33 (A**2) : -6.76000 REMARK 3 B12 (A**2) : 2.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.226 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.150 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.115 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1592 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2150 ; 1.677 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 188 ; 7.560 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 236 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1194 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 747 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 77 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.143 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 942 ; 0.668 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1504 ; 1.332 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 650 ; 2.441 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 646 ; 3.952 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 143 A 237 6 REMARK 3 1 B 143 B 237 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 781 ; 0.25 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 781 ; 0.91 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 237 REMARK 3 ORIGIN FOR THE GROUP (A): 29.0500 -11.0030 1.6050 REMARK 3 T TENSOR REMARK 3 T11: 0.0213 T22: 0.2681 REMARK 3 T33: 0.4271 T12: -0.0393 REMARK 3 T13: 0.0021 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.9851 L22: 1.0282 REMARK 3 L33: 3.8720 L12: -0.8746 REMARK 3 L13: 3.9922 L23: -0.1664 REMARK 3 S TENSOR REMARK 3 S11: 0.3180 S12: 0.0506 S13: -0.1264 REMARK 3 S21: -0.0771 S22: -0.0658 S23: 0.0850 REMARK 3 S31: 0.2079 S32: 0.2302 S33: -0.2521 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 143 B 237 REMARK 3 ORIGIN FOR THE GROUP (A): 1.0810 -5.1530 12.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0138 T22: 0.2745 REMARK 3 T33: 0.3995 T12: 0.0441 REMARK 3 T13: 0.0087 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 3.3463 L22: 1.4909 REMARK 3 L33: 3.7391 L12: 1.0902 REMARK 3 L13: -3.8471 L23: -0.3314 REMARK 3 S TENSOR REMARK 3 S11: 0.2752 S12: -0.0445 S13: 0.1466 REMARK 3 S21: 0.0551 S22: -0.0487 S23: 0.1081 REMARK 3 S31: -0.1572 S32: 0.2557 S33: -0.2266 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TJC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022682. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9814, 0.9811, 0.9745 REMARK 200 MONOCHROMATOR : SINGLE ASYMMETRICALLY CUT REMARK 200 SI(111) CRYSTAL WITH HORIZONTAL REMARK 200 DIFFRACTION PLANE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16195 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.160 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.25800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM PHOSPHATE, PH 8.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.28667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.14333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). THE AUTHORS STATE THAT REMARK 300 PROBABLY THE BIOLOGICAL UNIT IS NOT IDENTICAL TO THE REMARK 300 ASYMMETRIC UNIT, IT IS NOT KNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 238 REMARK 465 LYS A 239 REMARK 465 ASP A 240 REMARK 465 VAL A 241 REMARK 465 ASN A 242 REMARK 465 LYS A 243 REMARK 465 SER A 244 REMARK 465 HIS A 245 REMARK 465 HIS A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 GLU B 238 REMARK 465 LYS B 239 REMARK 465 ASP B 240 REMARK 465 VAL B 241 REMARK 465 ASN B 242 REMARK 465 LYS B 243 REMARK 465 SER B 244 REMARK 465 HIS B 245 REMARK 465 HIS B 246 REMARK 465 HIS B 247 REMARK 465 HIS B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 162 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 178 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 192 CB - CG - OD2 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP B 149 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 178 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 205 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET B 235 42.90 -80.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 160 ALA A 161 -42.63 REMARK 500 GLU B 160 ALA B 161 -37.64 REMARK 500 REMARK 500 REMARK: NULL DBREF 1TJC A 144 244 UNP P13674 P4HA1_HUMAN 161 261 DBREF 1TJC B 144 244 UNP P13674 P4HA1_HUMAN 161 261 SEQADV 1TJC MET A 143 UNP P13674 INITIATING METHIONINE SEQADV 1TJC SER A 150 UNP P13674 CYS 167 ENGINEERED MUTATION SEQADV 1TJC HIS A 245 UNP P13674 EXPRESSION TAG SEQADV 1TJC HIS A 246 UNP P13674 EXPRESSION TAG SEQADV 1TJC HIS A 247 UNP P13674 EXPRESSION TAG SEQADV 1TJC HIS A 248 UNP P13674 EXPRESSION TAG SEQADV 1TJC HIS A 249 UNP P13674 EXPRESSION TAG SEQADV 1TJC HIS A 250 UNP P13674 EXPRESSION TAG SEQADV 1TJC MET B 143 UNP P13674 INITIATING METHIONINE SEQADV 1TJC SER B 150 UNP P13674 CYS 167 ENGINEERED MUTATION SEQADV 1TJC HIS B 245 UNP P13674 EXPRESSION TAG SEQADV 1TJC HIS B 246 UNP P13674 EXPRESSION TAG SEQADV 1TJC HIS B 247 UNP P13674 EXPRESSION TAG SEQADV 1TJC HIS B 248 UNP P13674 EXPRESSION TAG SEQADV 1TJC HIS B 249 UNP P13674 EXPRESSION TAG SEQADV 1TJC HIS B 250 UNP P13674 EXPRESSION TAG SEQRES 1 A 108 MET PHE LEU THR ALA GLU ASP SER PHE GLU LEU GLY LYS SEQRES 2 A 108 VAL ALA TYR THR GLU ALA ASP TYR TYR HIS THR GLU LEU SEQRES 3 A 108 TRP MET GLU GLN ALA LEU ARG GLN LEU ASP GLU GLY GLU SEQRES 4 A 108 ILE SER THR ILE ASP LYS VAL SER VAL LEU ASP TYR LEU SEQRES 5 A 108 SER TYR ALA VAL TYR GLN GLN GLY ASP LEU ASP LYS ALA SEQRES 6 A 108 LEU LEU LEU THR LYS LYS LEU LEU GLU LEU ASP PRO GLU SEQRES 7 A 108 HIS GLN ARG ALA ASN GLY ASN LEU LYS TYR PHE GLU TYR SEQRES 8 A 108 ILE MET ALA LYS GLU LYS ASP VAL ASN LYS SER HIS HIS SEQRES 9 A 108 HIS HIS HIS HIS SEQRES 1 B 108 MET PHE LEU THR ALA GLU ASP SER PHE GLU LEU GLY LYS SEQRES 2 B 108 VAL ALA TYR THR GLU ALA ASP TYR TYR HIS THR GLU LEU SEQRES 3 B 108 TRP MET GLU GLN ALA LEU ARG GLN LEU ASP GLU GLY GLU SEQRES 4 B 108 ILE SER THR ILE ASP LYS VAL SER VAL LEU ASP TYR LEU SEQRES 5 B 108 SER TYR ALA VAL TYR GLN GLN GLY ASP LEU ASP LYS ALA SEQRES 6 B 108 LEU LEU LEU THR LYS LYS LEU LEU GLU LEU ASP PRO GLU SEQRES 7 B 108 HIS GLN ARG ALA ASN GLY ASN LEU LYS TYR PHE GLU TYR SEQRES 8 B 108 ILE MET ALA LYS GLU LYS ASP VAL ASN LYS SER HIS HIS SEQRES 9 B 108 HIS HIS HIS HIS FORMUL 3 HOH *73(H2 O) HELIX 1 1 THR A 146 GLU A 160 1 15 HELIX 2 2 ASP A 162 GLU A 179 1 18 HELIX 3 3 ASP A 186 GLN A 201 1 16 HELIX 4 4 ASP A 203 ASP A 218 1 16 HELIX 5 5 HIS A 221 LYS A 237 1 17 HELIX 6 6 THR B 146 GLU B 160 1 15 HELIX 7 7 ASP B 162 GLU B 179 1 18 HELIX 8 8 ASP B 186 GLN B 201 1 16 HELIX 9 9 ASP B 203 ASP B 218 1 16 HELIX 10 10 HIS B 221 MET B 235 1 15 CISPEP 1 ALA B 236 LYS B 237 0 17.25 CRYST1 55.980 55.980 105.430 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017864 0.010314 0.000000 0.00000 SCALE2 0.000000 0.020627 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009485 0.00000