HEADER OXIDOREDUCTASE 08-JUN-04 1TK1 TITLE YEAST OXYGEN-DEPENDENT COPROPORPHYRINOGEN OXIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPROPORPHYRINOGEN III OXIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TRUNCATED ODCPO; COMPND 5 SYNONYM: COPROPORPHYRINOGENASE, COPROGEN OXIDASE, COX; COMPND 6 EC: 1.3.3.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: HEM13, YDR044W, YD5112.02; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET16B KEYWDS COPROPORPHYRINOGEN OXIDASE, HEME BIOSYNTHESIS, ENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.D.PHILLIPS,F.G.WHITBY,C.A.WARBY,P.LABBE,C.YANG,J.W.PFLUGRATH, AUTHOR 2 J.D.FERRARA,H.ROBINSON,J.P.KUSHNER,C.P.HILL REVDAT 4 14-FEB-24 1TK1 1 REMARK REVDAT 3 24-FEB-09 1TK1 1 VERSN REVDAT 2 28-SEP-04 1TK1 1 JRNL REVDAT 1 20-JUL-04 1TK1 0 JRNL AUTH J.D.PHILLIPS,F.G.WHITBY,C.A.WARBY,P.LABBE,C.YANG, JRNL AUTH 2 J.W.PFLUGRATH,J.D.FERRARA,H.ROBINSON,J.P.KUSHNER,C.P.HILL JRNL TITL CRYSTAL STRUCTURE OF THE OXYGEN-DEPENDANT COPROPORPHYRINOGEN JRNL TITL 2 OXIDASE (HEM13P) OF SACCHAROMYCES CEREVISIAE JRNL REF J.BIOL.CHEM. V. 279 38960 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15194705 JRNL DOI 10.1074/JBC.M406050200 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0001 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 21772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1182 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1558 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1759 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.860 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1821 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2462 ; 1.851 ; 1.923 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 219 ; 9.089 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;34.099 ;24.086 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 305 ;17.693 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;21.333 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 255 ; 0.169 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1415 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 875 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1242 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 127 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.395 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.167 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1135 ; 1.431 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1761 ; 2.361 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 799 ; 3.222 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 701 ; 4.879 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1TK1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022706. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21772 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 59.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 28.70 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 29.60 REMARK 200 R MERGE FOR SHELL (I) : 0.58500 REMARK 200 R SYM FOR SHELL (I) : 0.58500 REMARK 200 FOR SHELL : 7.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD - CHROMIUM SULFUR REMARK 200 ANOMALOUS REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3000, 0.1 M HEPES, 0.2 M REMARK 280 SODIUM ACETATE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.27150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.42500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.42500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.63575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.42500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.42500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 85.90725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.42500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.42500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.63575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.42500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.42500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 85.90725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.27150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 286 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 6 REMARK 465 PRO A 7 REMARK 465 ASP A 42 REMARK 465 THR A 43 REMARK 465 TRP A 44 REMARK 465 THR A 45 REMARK 465 ARG A 46 REMARK 465 GLY A 47 REMARK 465 ASN A 48 REMARK 465 ASP A 49 REMARK 465 GLY A 50 REMARK 465 ASN A 92 REMARK 465 LEU A 93 REMARK 465 ARG A 94 REMARK 465 LEU A 95 REMARK 465 PRO A 96 REMARK 465 GLU A 97 REMARK 465 ASP A 98 REMARK 465 PRO A 99 REMARK 465 LYS A 100 REMARK 465 THR A 101 REMARK 465 GLY A 102 REMARK 465 LEU A 103 REMARK 465 PRO A 104 REMARK 465 VAL A 105 REMARK 465 THR A 106 REMARK 465 TRP A 192 REMARK 465 CYS A 193 REMARK 465 ASP A 194 REMARK 465 GLU A 195 REMARK 465 TYR A 196 REMARK 465 PHE A 197 REMARK 465 TYR A 198 REMARK 465 ILE A 199 REMARK 465 THR A 200 REMARK 465 HIS A 201 REMARK 465 ARG A 202 REMARK 465 LYS A 203 REMARK 465 GLU A 204 REMARK 465 THR A 205 REMARK 465 ARG A 206 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 265 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 89 O HOH A 336 2.12 REMARK 500 O TRP A 140 O HOH A 335 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 182 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 217 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 LEU A 236 CB - CG - CD1 ANGL. DEV. = 12.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 -163.14 48.58 REMARK 500 TRP A 140 -143.13 -128.53 REMARK 500 ASN A 141 98.57 80.45 REMARK 500 GLN A 142 94.04 39.65 REMARK 500 ASP A 143 -78.51 -64.20 REMARK 500 THR A 145 -78.99 -117.97 REMARK 500 GLN A 147 -64.13 -125.89 REMARK 500 SER A 160 -74.95 -92.00 REMARK 500 ASP A 182 145.53 -174.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 141 GLN A 142 -145.31 REMARK 500 GLY A 144 THR A 145 149.80 REMARK 500 PRO A 146 GLN A 147 126.72 REMARK 500 GLY A 264 ARG A 265 145.68 REMARK 500 REMARK 500 REMARK: NULL DBREF 1TK1 A 6 265 UNP P11353 HEM6_YEAST 6 265 SEQRES 1 A 260 ASP PRO ARG ASN LEU PRO ILE ARG GLN GLN MET GLU ALA SEQRES 2 A 260 LEU ILE ARG ARG LYS GLN ALA GLU ILE THR GLN GLY LEU SEQRES 3 A 260 GLU SER ILE ASP THR VAL LYS PHE HIS ALA ASP THR TRP SEQRES 4 A 260 THR ARG GLY ASN ASP GLY GLY GLY GLY THR SER MET VAL SEQRES 5 A 260 ILE GLN ASP GLY THR THR PHE GLU LYS GLY GLY VAL ASN SEQRES 6 A 260 VAL SER VAL VAL TYR GLY GLN LEU SER PRO ALA ALA VAL SEQRES 7 A 260 SER ALA MET LYS ALA ASP HIS LYS ASN LEU ARG LEU PRO SEQRES 8 A 260 GLU ASP PRO LYS THR GLY LEU PRO VAL THR ASP GLY VAL SEQRES 9 A 260 LYS PHE PHE ALA CYS GLY LEU SER MET VAL ILE HIS PRO SEQRES 10 A 260 VAL ASN PRO HIS ALA PRO THR THR HIS LEU ASN TYR ARG SEQRES 11 A 260 TYR PHE GLU THR TRP ASN GLN ASP GLY THR PRO GLN THR SEQRES 12 A 260 TRP TRP PHE GLY GLY GLY ALA ASP LEU THR PRO SER TYR SEQRES 13 A 260 LEU TYR GLU GLU ASP GLY GLN LEU PHE HIS GLN LEU HIS SEQRES 14 A 260 LYS ASP ALA LEU ASP LYS HIS ASP THR ALA LEU TYR PRO SEQRES 15 A 260 ARG PHE LYS LYS TRP CYS ASP GLU TYR PHE TYR ILE THR SEQRES 16 A 260 HIS ARG LYS GLU THR ARG GLY ILE GLY GLY ILE PHE PHE SEQRES 17 A 260 ASP ASP TYR ASP GLU ARG ASP PRO GLN GLU ILE LEU LYS SEQRES 18 A 260 MET VAL GLU ASP CYS PHE ASP ALA PHE LEU PRO SER TYR SEQRES 19 A 260 LEU THR ILE VAL LYS ARG ARG LYS ASP MET PRO TYR THR SEQRES 20 A 260 LYS GLU GLU GLN GLN TRP GLN ALA ILE ARG ARG GLY ARG FORMUL 2 HOH *92(H2 O) HELIX 1 1 PRO A 11 SER A 33 1 23 HELIX 2 2 SER A 79 LYS A 87 1 9 HELIX 3 3 ALA A 88 HIS A 90 5 3 HELIX 4 4 TYR A 163 LYS A 180 1 18 HELIX 5 5 ALA A 184 LYS A 190 1 7 HELIX 6 6 ASP A 220 LYS A 247 1 28 HELIX 7 7 THR A 252 GLY A 264 1 13 SHEET 1 A 6 THR A 54 GLN A 59 0 SHEET 2 A 6 PHE A 64 LEU A 78 -1 O VAL A 71 N THR A 54 SHEET 3 A 6 VAL A 109 PRO A 122 -1 O SER A 117 N ASN A 70 SHEET 4 A 6 THR A 129 THR A 139 -1 O TYR A 134 N LEU A 116 SHEET 5 A 6 TRP A 149 THR A 158 -1 O GLY A 152 N ARG A 135 SHEET 6 A 6 GLY A 209 TYR A 216 -1 O PHE A 213 N GLY A 153 CISPEP 1 GLY A 51 GLY A 52 0 11.41 CRYST1 70.850 70.850 114.543 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014114 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014114 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008730 0.00000