HEADER SIGNALING PROTEIN 08-JUN-04 1TK7 TITLE NMR STRUCTURE OF WW DOMAINS (WW3-4) FROM SUPPRESSOR OF DELTEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CG4244-PB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: SU(DX); SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BCL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS WW DOMAIN, NOTCH, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 7 AUTHOR O.Y.FEDOROFF,J.M.AVIS,A.P.GOLOVANOV,M.BARON,S.A.TOWNSON REVDAT 5 22-MAY-24 1TK7 1 REMARK REVDAT 4 02-MAR-22 1TK7 1 REMARK SEQADV REVDAT 3 24-FEB-09 1TK7 1 VERSN REVDAT 2 12-OCT-04 1TK7 1 JRNL REVDAT 1 20-JUL-04 1TK7 0 JRNL AUTH O.Y.FEDOROFF,S.A.TOWNSON,A.P.GOLOVANOV,M.BARON,J.M.AVIS JRNL TITL THE STRUCTURE AND DYNAMICS OF TANDEM WW DOMAINS IN A JRNL TITL 2 NEGATIVE REGULATOR OF NOTCH SIGNALING, SUPPRESSOR OF DELTEX JRNL REF J.BIOL.CHEM. V. 279 34991 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15173166 JRNL DOI 10.1074/JBC.M404987200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2 REMARK 3 AUTHORS : NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TK7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022712. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 7.1 REMARK 210 IONIC STRENGTH : 150 NA/KCL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 PBS, 50MM ARG/GLU REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 2D REMARK 210 NOESY; E-COSY; 2D TOCSY; HSQC IN REMARK 210 LIQUID CRYSTAL MEDIA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 7 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH FAVORABLE NON REMARK 210 -BOND ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 75 H THR A 78 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 4 PHE A 29 CE1 PHE A 29 CZ 0.127 REMARK 500 7 PHE A 29 CE1 PHE A 29 CZ 0.191 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 4 40.84 -80.51 REMARK 500 1 ALA A 9 28.65 -79.22 REMARK 500 1 LEU A 13 64.43 60.85 REMARK 500 1 ASP A 15 -40.83 -156.86 REMARK 500 1 ASN A 25 27.12 88.07 REMARK 500 1 ARG A 35 88.30 59.32 REMARK 500 1 GLU A 40 -57.17 71.68 REMARK 500 1 ASP A 41 144.58 -172.27 REMARK 500 1 ARG A 43 47.97 -74.76 REMARK 500 1 GLN A 45 -125.79 47.32 REMARK 500 1 VAL A 49 -43.34 -144.69 REMARK 500 1 GLU A 54 23.84 -146.73 REMARK 500 1 PRO A 56 31.51 -86.46 REMARK 500 1 LEU A 57 -51.94 -151.08 REMARK 500 1 PRO A 58 55.99 -108.59 REMARK 500 1 PRO A 59 46.30 -82.20 REMARK 500 1 ARG A 79 61.47 61.80 REMARK 500 1 GLU A 84 -121.67 -137.46 REMARK 500 1 ASP A 85 -61.90 100.78 REMARK 500 2 MET A 7 -45.56 -156.15 REMARK 500 2 ALA A 9 -66.60 75.07 REMARK 500 2 ASP A 15 26.37 -150.16 REMARK 500 2 SER A 23 -8.77 -58.90 REMARK 500 2 ASN A 25 22.02 85.81 REMARK 500 2 ARG A 35 83.23 62.21 REMARK 500 2 GLU A 40 -56.46 170.54 REMARK 500 2 ASP A 41 126.65 113.48 REMARK 500 2 ARG A 43 157.24 178.77 REMARK 500 2 GLU A 48 -117.04 -103.46 REMARK 500 2 VAL A 49 -94.53 -66.09 REMARK 500 2 ASN A 53 106.51 76.54 REMARK 500 2 LEU A 57 58.34 38.21 REMARK 500 2 PRO A 58 51.87 -108.55 REMARK 500 2 ALA A 67 -36.23 -39.54 REMARK 500 2 ARG A 79 83.57 60.47 REMARK 500 2 PRO A 86 -140.74 -64.26 REMARK 500 2 ARG A 87 79.56 63.86 REMARK 500 3 GLU A 4 39.22 -164.44 REMARK 500 3 PHE A 5 128.00 68.54 REMARK 500 3 HIS A 6 149.62 72.77 REMARK 500 3 ASP A 8 -124.70 52.47 REMARK 500 3 ALA A 9 -45.04 69.76 REMARK 500 3 ASN A 25 30.83 135.81 REMARK 500 3 ARG A 35 68.03 61.57 REMARK 500 3 GLU A 40 -97.59 145.62 REMARK 500 3 ASP A 41 126.41 170.74 REMARK 500 3 PRO A 42 40.21 -88.40 REMARK 500 3 GLN A 45 -131.36 -93.69 REMARK 500 3 GLU A 48 -46.27 -131.60 REMARK 500 3 VAL A 49 -157.06 -153.81 REMARK 500 REMARK 500 THIS ENTRY HAS 127 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 PHE A 29 0.08 SIDE CHAIN REMARK 500 7 PHE A 29 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1TK7 A 8 88 UNP Q9Y0H4 SUDX_DROME 474 554 SEQADV 1TK7 GLY A 1 UNP Q9Y0H4 CLONING ARTIFACT SEQADV 1TK7 SER A 2 UNP Q9Y0H4 CLONING ARTIFACT SEQADV 1TK7 PRO A 3 UNP Q9Y0H4 CLONING ARTIFACT SEQADV 1TK7 GLU A 4 UNP Q9Y0H4 CLONING ARTIFACT SEQADV 1TK7 PHE A 5 UNP Q9Y0H4 CLONING ARTIFACT SEQADV 1TK7 HIS A 6 UNP Q9Y0H4 CLONING ARTIFACT SEQADV 1TK7 MET A 7 UNP Q9Y0H4 CLONING ARTIFACT SEQRES 1 A 88 GLY SER PRO GLU PHE HIS MET ASP ALA LEU GLY PRO LEU SEQRES 2 A 88 PRO ASP GLY TRP GLU LYS LYS ILE GLN SER ASP ASN ARG SEQRES 3 A 88 VAL TYR PHE VAL ASN HIS LYS ASN ARG THR THR GLN TRP SEQRES 4 A 88 GLU ASP PRO ARG THR GLN GLY GLN GLU VAL SER LEU ILE SEQRES 5 A 88 ASN GLU GLY PRO LEU PRO PRO GLY TRP GLU ILE ARG TYR SEQRES 6 A 88 THR ALA ALA GLY GLU ARG PHE PHE VAL ASP HIS ASN THR SEQRES 7 A 88 ARG ARG THR THR PHE GLU ASP PRO ARG PRO HELIX 1 1 VAL A 49 GLU A 54 1 6 SHEET 1 A 3 LYS A 19 GLN A 22 0 SHEET 2 A 3 ARG A 26 ASN A 31 -1 O TYR A 28 N LYS A 20 SHEET 3 A 3 THR A 36 GLU A 40 -1 O THR A 36 N ASN A 31 SHEET 1 B 3 GLU A 62 THR A 66 0 SHEET 2 B 3 GLU A 70 ASP A 75 -1 O PHE A 72 N ARG A 64 SHEET 3 B 3 ARG A 80 THR A 82 -1 O THR A 82 N PHE A 73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1