HEADER PROTEIN BINDING 15-JUN-04 1TP3 TITLE PDZ3 DOMAIN OF PSD-95 PROTEIN COMPLEXED WITH KKETPV PEPTIDE LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRESYNAPTIC DENSITY PROTEIN 95; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ 3; RESIDUES 302-402; COMPND 5 SYNONYM: PSD-95, PRESYNAPTIC PROTEIN SAP90, SYNAPSE-ASSOCIATED COMPND 6 PROTEIN 90, DISCS, LARGE HOMOLOG 4; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: KKETPV PEPTIDE LIGAND; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: DLG4, DLGH4, PSD95; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: GOLD DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 OTHER_DETAILS: THE KKETPV PEPTIDE LIGAND WAS CHEMICALLY SYNTHESIZED SOURCE 16 USING SOLID PHASE PEPTIDE SYNTHESIS. KEYWDS PDZ DOMAIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR D.SARO,P.MARTIN,J.F.VICKREY,A.GRIFFIN,L.C.KOVARI,M.R.SPALLER REVDAT 6 23-AUG-23 1TP3 1 SEQADV REVDAT 5 11-OCT-17 1TP3 1 REMARK REVDAT 4 01-JUL-15 1TP3 1 AUTHOR JRNL VERSN SOURCE REVDAT 3 24-FEB-09 1TP3 1 VERSN REVDAT 2 04-OCT-05 1TP3 1 TITLE COMPND SOURCE AUTHOR REVDAT 2 2 1 JRNL REVDAT 1 20-SEP-05 1TP3 0 JRNL AUTH D.SARO,P.MARTIN,J.F.VICKREY,A.GRIFFIN,L.C.KOVARI,M.R.SPALLER JRNL TITL STRUCTURE OF THE THIRD PDZ DOMAIN OF PSD-95 PROTEIN JRNL TITL 2 COMPLEXED WITH KKETPV PEPTIDE LIGAND JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 8486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 423 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 606 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 908 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.210 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.793 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 920 ; 0.038 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 851 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1239 ; 2.721 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1973 ; 1.223 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 119 ; 9.029 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 139 ; 0.175 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1051 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 182 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 205 ; 0.239 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1049 ; 0.280 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 633 ; 0.107 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 56 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.398 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 44 ; 0.358 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.251 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 595 ; 1.618 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 947 ; 2.599 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 325 ; 4.129 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 292 ; 6.682 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 301 A 415 REMARK 3 RESIDUE RANGE : B 420 B 425 REMARK 3 ORIGIN FOR THE GROUP (A): 49.2566 74.6078 32.7672 REMARK 3 T TENSOR REMARK 3 T11: 0.0070 T22: 0.0061 REMARK 3 T33: 0.0029 T12: -0.0017 REMARK 3 T13: -0.0008 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.1032 L22: 0.2247 REMARK 3 L33: 0.2620 L12: -0.1149 REMARK 3 L13: 0.0739 L23: 0.0802 REMARK 3 S TENSOR REMARK 3 S11: -0.0118 S12: 0.0004 S13: -0.0055 REMARK 3 S21: 0.0064 S22: 0.0095 S23: 0.0025 REMARK 3 S31: 0.0067 S32: 0.0121 S33: 0.0023 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1TP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000022809. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8916 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 23.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 11.58 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: XTALVIEW REMARK 200 STARTING MODEL: PDB ENTRY 1BE9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M SODIUM CITRATE, 0.1 M HEPES, PH REMARK 280 6.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.83150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.83150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.83150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.83150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.83150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.83150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 44.83150 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 44.83150 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 44.83150 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 44.83150 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 44.83150 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 44.83150 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 44.83150 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 44.83150 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 44.83150 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 44.83150 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 44.83150 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 44.83150 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 67.24725 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 22.41575 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 22.41575 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 67.24725 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 67.24725 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 67.24725 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 22.41575 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 22.41575 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 67.24725 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 22.41575 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 67.24725 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 22.41575 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 67.24725 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 22.41575 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 22.41575 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 22.41575 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 67.24725 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 22.41575 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 67.24725 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 67.24725 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 67.24725 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 22.41575 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 22.41575 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 67.24725 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 67.24725 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 22.41575 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 22.41575 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 22.41575 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 22.41575 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 67.24725 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 22.41575 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 67.24725 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 22.41575 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 67.24725 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 67.24725 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 67.24725 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 297 REMARK 465 SER A 298 REMARK 465 PRO A 299 REMARK 465 GLU A 300 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 301 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 332 CG OD1 OD2 REMARK 470 LYS B 420 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 334 O HOH A 63 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU B 422 OE1 GLU B 422 24565 1.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 310 CG GLU A 310 CD 0.104 REMARK 500 GLU A 310 CD GLU A 310 OE2 0.101 REMARK 500 GLU A 334 CD GLU A 334 OE1 0.120 REMARK 500 GLN A 358 CG GLN A 358 CD 0.155 REMARK 500 GLU A 373 CD GLU A 373 OE2 0.076 REMARK 500 GLU A 395 CD GLU A 395 OE1 0.089 REMARK 500 GLU A 395 CD GLU A 395 OE2 0.070 REMARK 500 GLU A 396 CD GLU A 396 OE1 0.086 REMARK 500 TYR A 397 CG TYR A 397 CD2 -0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 309 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 LEU A 353 CB - CG - CD1 ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG A 405 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 411 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 411 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 LYS B 421 N - CA - C ANGL. DEV. = 20.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 363 50.35 34.19 REMARK 500 LYS B 421 132.19 73.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 420 LYS B 421 131.60 REMARK 500 REMARK 500 REMARK: NULL DBREF 1TP3 A 302 402 UNP P31016 DLG4_RAT 302 402 DBREF 1TP3 B 420 425 PDB 1TP3 1TP3 420 425 SEQADV 1TP3 GLY A 297 UNP P31016 CLONING ARTIFACT SEQADV 1TP3 SER A 298 UNP P31016 CLONING ARTIFACT SEQADV 1TP3 PRO A 299 UNP P31016 CLONING ARTIFACT SEQADV 1TP3 GLU A 300 UNP P31016 CLONING ARTIFACT SEQADV 1TP3 PHE A 301 UNP P31016 CLONING ARTIFACT SEQADV 1TP3 ASN A 403 UNP P31016 CLONING ARTIFACT SEQADV 1TP3 SER A 404 UNP P31016 CLONING ARTIFACT SEQADV 1TP3 ARG A 405 UNP P31016 CLONING ARTIFACT SEQADV 1TP3 VAL A 406 UNP P31016 CLONING ARTIFACT SEQADV 1TP3 ASP A 407 UNP P31016 CLONING ARTIFACT SEQADV 1TP3 SER A 408 UNP P31016 CLONING ARTIFACT SEQADV 1TP3 SER A 409 UNP P31016 CLONING ARTIFACT SEQADV 1TP3 GLY A 410 UNP P31016 CLONING ARTIFACT SEQADV 1TP3 ARG A 411 UNP P31016 CLONING ARTIFACT SEQADV 1TP3 ILE A 412 UNP P31016 CLONING ARTIFACT SEQADV 1TP3 VAL A 413 UNP P31016 CLONING ARTIFACT SEQADV 1TP3 THR A 414 UNP P31016 CLONING ARTIFACT SEQADV 1TP3 ASP A 415 UNP P31016 CLONING ARTIFACT SEQRES 1 A 119 GLY SER PRO GLU PHE LEU GLY GLU GLU ASP ILE PRO ARG SEQRES 2 A 119 GLU PRO ARG ARG ILE VAL ILE HIS ARG GLY SER THR GLY SEQRES 3 A 119 LEU GLY PHE ASN ILE VAL GLY GLY GLU ASP GLY GLU GLY SEQRES 4 A 119 ILE PHE ILE SER PHE ILE LEU ALA GLY GLY PRO ALA ASP SEQRES 5 A 119 LEU SER GLY GLU LEU ARG LYS GLY ASP GLN ILE LEU SER SEQRES 6 A 119 VAL ASN GLY VAL ASP LEU ARG ASN ALA SER HIS GLU GLN SEQRES 7 A 119 ALA ALA ILE ALA LEU LYS ASN ALA GLY GLN THR VAL THR SEQRES 8 A 119 ILE ILE ALA GLN TYR LYS PRO GLU GLU TYR SER ARG PHE SEQRES 9 A 119 GLU ALA ASN SER ARG VAL ASP SER SER GLY ARG ILE VAL SEQRES 10 A 119 THR ASP SEQRES 1 B 6 LYS LYS GLU THR PRO VAL FORMUL 3 HOH *66(H2 O) HELIX 1 1 PHE A 301 GLU A 305 5 5 HELIX 2 2 GLU A 331 GLU A 334 5 4 HELIX 3 3 GLY A 345 GLY A 351 1 7 HELIX 4 4 SER A 371 ASN A 381 1 11 HELIX 5 5 LYS A 393 ARG A 399 1 7 SHEET 1 A 4 ARG A 312 HIS A 317 0 SHEET 2 A 4 THR A 385 TYR A 392 -1 O ILE A 388 N ILE A 314 SHEET 3 A 4 ASP A 357 VAL A 362 -1 N GLN A 358 O GLN A 391 SHEET 4 A 4 VAL A 365 ASP A 366 -1 O VAL A 365 N VAL A 362 SHEET 1 B 3 ILE A 336 ILE A 341 0 SHEET 2 B 3 PHE A 325 GLY A 329 -1 SHEET 3 B 3 GLU B 422 PRO B 424 -1 O THR B 423 N ILE A 327 SHEET 1 C 2 SER A 404 VAL A 406 0 SHEET 2 C 2 ILE A 412 THR A 414 -1 O VAL A 413 N ARG A 405 CRYST1 89.663 89.663 89.663 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011153 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011153 0.00000