HEADER OXIDOREDUCTASE 16-JUN-04 1TP9 TITLE PRX D (TYPE II) FROM POPULUS TREMULA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXIREDOXIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PRX D (TYPE II); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: POPULUS TRICHOCARPA; SOURCE 3 ORGANISM_TAXID: 3694; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3D KEYWDS PEROXIREDOXIN, OLIGOMER, THIOREDOXIN FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ECHALIER,X.TRIVELLI,C.CORBIER,N.ROUHIER,O.WALKER,P.TSAN, AUTHOR 2 J.P.JACQUOT,I.KRIMM,J.M.LANCELIN REVDAT 3 13-MAR-24 1TP9 1 REMARK REVDAT 2 24-FEB-09 1TP9 1 VERSN REVDAT 1 26-APR-05 1TP9 0 JRNL AUTH A.ECHALIER,X.TRIVELLI,C.CORBIER,N.ROUHIER,O.WALKER,P.TSAN, JRNL AUTH 2 J.P.JACQUOT,A.AUBRY,I.KRIMM,J.M.LANCELIN JRNL TITL CRYSTAL STRUCTURE AND SOLUTION NMR DYNAMICS OF A D (TYPE II) JRNL TITL 2 PEROXIREDOXIN GLUTAREDOXIN AND THIOREDOXIN DEPENDENT: A NEW JRNL TITL 3 INSIGHT INTO THE PEROXIREDOXIN OLIGOMERISM JRNL REF BIOCHEMISTRY V. 44 1755 2005 JRNL REFN ISSN 0006-2960 JRNL PMID 15697201 JRNL DOI 10.1021/BI048226S REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 68051 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7560 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4433 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 457 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4895 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 622 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.50000 REMARK 3 B33 (A**2) : 0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.51000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.946 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4987 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4625 ; 0.032 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6738 ; 1.804 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10826 ; 1.137 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 642 ; 6.698 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 776 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5514 ; 0.018 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 922 ; 0.030 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 921 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5095 ; 0.250 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2673 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 375 ; 0.212 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.319 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 100 ; 0.354 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.277 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3197 ; 1.084 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5117 ; 1.819 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1790 ; 2.647 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1621 ; 4.244 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1TP9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022815. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LURE REMARK 200 BEAMLINE : DW32 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.948 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79011 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 29.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, PH 8.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.55600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 1 REMARK 465 LEU D 162 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1443 O HOH A 1446 0.87 REMARK 500 OD2 ASP C 161 O HOH C 196 1.74 REMARK 500 O HOH D 208 O HOH D 241 1.87 REMARK 500 O GLY C 146 O HOH C 278 1.90 REMARK 500 O HOH A 1325 O HOH A 1433 1.93 REMARK 500 OH TYR C 17 O HOH C 189 2.12 REMARK 500 OG1 THR D 72 O HOH D 197 2.16 REMARK 500 O HIS A 97 O HOH A 1362 2.16 REMARK 500 O HOH C 274 O HOH C 275 2.18 REMARK 500 O HOH C 254 O HOH C 270 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN C 119 O HOH D 194 2646 1.58 REMARK 500 O HOH C 263 O HOH D 273 2646 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 161 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 HIS B 55 CG - ND1 - CE1 ANGL. DEV. = 8.2 DEGREES REMARK 500 HIS B 55 ND1 - CE1 - NE2 ANGL. DEV. = -10.4 DEGREES REMARK 500 ASP B 135 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP C 12 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG C 128 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP C 157 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP D 161 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 47 -0.14 69.30 REMARK 500 LEU A 137 -6.23 74.79 REMARK 500 THR A 151 -33.48 -133.70 REMARK 500 PHE B 47 -4.58 75.32 REMARK 500 LYS B 54 -60.46 -120.29 REMARK 500 TYR B 92 67.57 -119.94 REMARK 500 LEU B 137 -3.28 77.22 REMARK 500 LEU C 24 104.60 -43.89 REMARK 500 PHE C 47 -9.61 74.46 REMARK 500 LYS C 54 -55.25 -126.41 REMARK 500 LEU C 137 -7.97 71.15 REMARK 500 PHE D 47 -6.82 72.55 REMARK 500 TYR D 92 72.85 -118.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU D 149 PHE D 150 -149.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS B 55 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1249 DBREF 1TP9 A 1 162 UNP Q8S3L0 Q8S3L0_9ROSI 1 162 DBREF 1TP9 B 1 162 UNP Q8S3L0 Q8S3L0_9ROSI 1 162 DBREF 1TP9 C 1 162 UNP Q8S3L0 Q8S3L0_9ROSI 1 162 DBREF 1TP9 D 1 162 UNP Q8S3L0 Q8S3L0_9ROSI 1 162 SEQRES 1 A 162 MET ALA PRO ILE ALA VAL GLY ASP VAL LEU PRO ASP GLY SEQRES 2 A 162 LYS LEU ALA TYR PHE ASP GLU GLN ASP GLN LEU GLN GLU SEQRES 3 A 162 VAL SER VAL HIS SER LEU VAL ALA GLY LYS LYS VAL ILE SEQRES 4 A 162 LEU PHE GLY VAL PRO GLY ALA PHE THR PRO THR CYS SER SEQRES 5 A 162 LEU LYS HIS VAL PRO GLY PHE ILE GLU LYS ALA GLY GLU SEQRES 6 A 162 LEU LYS SER LYS GLY VAL THR GLU ILE LEU CYS ILE SER SEQRES 7 A 162 VAL ASN ASP PRO PHE VAL MET LYS ALA TRP ALA LYS SER SEQRES 8 A 162 TYR PRO GLU ASN LYS HIS VAL LYS PHE LEU ALA ASP GLY SEQRES 9 A 162 SER ALA THR TYR THR HIS ALA LEU GLY LEU GLU LEU ASP SEQRES 10 A 162 LEU GLN GLU LYS GLY LEU GLY THR ARG SER ARG ARG PHE SEQRES 11 A 162 ALA LEU LEU VAL ASP ASP LEU LYS VAL LYS ALA ALA ASN SEQRES 12 A 162 ILE GLU GLY GLY GLY GLU PHE THR VAL SER SER ALA GLU SEQRES 13 A 162 ASP ILE LEU LYS ASP LEU SEQRES 1 B 162 MET ALA PRO ILE ALA VAL GLY ASP VAL LEU PRO ASP GLY SEQRES 2 B 162 LYS LEU ALA TYR PHE ASP GLU GLN ASP GLN LEU GLN GLU SEQRES 3 B 162 VAL SER VAL HIS SER LEU VAL ALA GLY LYS LYS VAL ILE SEQRES 4 B 162 LEU PHE GLY VAL PRO GLY ALA PHE THR PRO THR CYS SER SEQRES 5 B 162 LEU LYS HIS VAL PRO GLY PHE ILE GLU LYS ALA GLY GLU SEQRES 6 B 162 LEU LYS SER LYS GLY VAL THR GLU ILE LEU CYS ILE SER SEQRES 7 B 162 VAL ASN ASP PRO PHE VAL MET LYS ALA TRP ALA LYS SER SEQRES 8 B 162 TYR PRO GLU ASN LYS HIS VAL LYS PHE LEU ALA ASP GLY SEQRES 9 B 162 SER ALA THR TYR THR HIS ALA LEU GLY LEU GLU LEU ASP SEQRES 10 B 162 LEU GLN GLU LYS GLY LEU GLY THR ARG SER ARG ARG PHE SEQRES 11 B 162 ALA LEU LEU VAL ASP ASP LEU LYS VAL LYS ALA ALA ASN SEQRES 12 B 162 ILE GLU GLY GLY GLY GLU PHE THR VAL SER SER ALA GLU SEQRES 13 B 162 ASP ILE LEU LYS ASP LEU SEQRES 1 C 162 MET ALA PRO ILE ALA VAL GLY ASP VAL LEU PRO ASP GLY SEQRES 2 C 162 LYS LEU ALA TYR PHE ASP GLU GLN ASP GLN LEU GLN GLU SEQRES 3 C 162 VAL SER VAL HIS SER LEU VAL ALA GLY LYS LYS VAL ILE SEQRES 4 C 162 LEU PHE GLY VAL PRO GLY ALA PHE THR PRO THR CYS SER SEQRES 5 C 162 LEU LYS HIS VAL PRO GLY PHE ILE GLU LYS ALA GLY GLU SEQRES 6 C 162 LEU LYS SER LYS GLY VAL THR GLU ILE LEU CYS ILE SER SEQRES 7 C 162 VAL ASN ASP PRO PHE VAL MET LYS ALA TRP ALA LYS SER SEQRES 8 C 162 TYR PRO GLU ASN LYS HIS VAL LYS PHE LEU ALA ASP GLY SEQRES 9 C 162 SER ALA THR TYR THR HIS ALA LEU GLY LEU GLU LEU ASP SEQRES 10 C 162 LEU GLN GLU LYS GLY LEU GLY THR ARG SER ARG ARG PHE SEQRES 11 C 162 ALA LEU LEU VAL ASP ASP LEU LYS VAL LYS ALA ALA ASN SEQRES 12 C 162 ILE GLU GLY GLY GLY GLU PHE THR VAL SER SER ALA GLU SEQRES 13 C 162 ASP ILE LEU LYS ASP LEU SEQRES 1 D 162 MET ALA PRO ILE ALA VAL GLY ASP VAL LEU PRO ASP GLY SEQRES 2 D 162 LYS LEU ALA TYR PHE ASP GLU GLN ASP GLN LEU GLN GLU SEQRES 3 D 162 VAL SER VAL HIS SER LEU VAL ALA GLY LYS LYS VAL ILE SEQRES 4 D 162 LEU PHE GLY VAL PRO GLY ALA PHE THR PRO THR CYS SER SEQRES 5 D 162 LEU LYS HIS VAL PRO GLY PHE ILE GLU LYS ALA GLY GLU SEQRES 6 D 162 LEU LYS SER LYS GLY VAL THR GLU ILE LEU CYS ILE SER SEQRES 7 D 162 VAL ASN ASP PRO PHE VAL MET LYS ALA TRP ALA LYS SER SEQRES 8 D 162 TYR PRO GLU ASN LYS HIS VAL LYS PHE LEU ALA ASP GLY SEQRES 9 D 162 SER ALA THR TYR THR HIS ALA LEU GLY LEU GLU LEU ASP SEQRES 10 D 162 LEU GLN GLU LYS GLY LEU GLY THR ARG SER ARG ARG PHE SEQRES 11 D 162 ALA LEU LEU VAL ASP ASP LEU LYS VAL LYS ALA ALA ASN SEQRES 12 D 162 ILE GLU GLY GLY GLY GLU PHE THR VAL SER SER ALA GLU SEQRES 13 D 162 ASP ILE LEU LYS ASP LEU HET SO4 A1248 5 HET SO4 B1249 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *622(H2 O) HELIX 1 1 VAL A 29 ALA A 34 1 6 HELIX 2 2 THR A 48 LYS A 54 1 7 HELIX 3 3 LYS A 54 LYS A 69 1 16 HELIX 4 4 ASP A 81 SER A 91 1 11 HELIX 5 5 ALA A 106 LEU A 112 1 7 HELIX 6 6 SER A 154 LYS A 160 1 7 HELIX 7 7 VAL B 29 ALA B 34 1 6 HELIX 8 8 THR B 48 LYS B 54 1 7 HELIX 9 9 LYS B 54 LYS B 69 1 16 HELIX 10 10 ASP B 81 SER B 91 1 11 HELIX 11 11 ALA B 106 LEU B 112 1 7 HELIX 12 12 SER B 154 LYS B 160 1 7 HELIX 13 13 VAL C 29 ALA C 34 1 6 HELIX 14 14 THR C 48 LYS C 54 1 7 HELIX 15 15 LYS C 54 LYS C 69 1 16 HELIX 16 16 ASP C 81 LYS C 90 1 10 HELIX 17 17 ALA C 106 LEU C 112 1 7 HELIX 18 18 SER C 154 ASP C 161 1 8 HELIX 19 19 VAL D 29 ALA D 34 1 6 HELIX 20 20 THR D 48 LYS D 54 1 7 HELIX 21 21 LYS D 54 LYS D 62 1 9 HELIX 22 22 LYS D 62 LYS D 69 1 8 HELIX 23 23 ASP D 81 SER D 91 1 11 HELIX 24 24 ALA D 106 LEU D 112 1 7 HELIX 25 25 GLN D 119 GLY D 122 5 4 HELIX 26 26 SER D 154 LEU D 159 1 6 SHEET 1 A 2 LYS A 14 PHE A 18 0 SHEET 2 A 2 LEU A 24 SER A 28 -1 O GLN A 25 N TYR A 17 SHEET 1 B 5 VAL A 98 ALA A 102 0 SHEET 2 B 5 ILE A 74 SER A 78 1 N CYS A 76 O LEU A 101 SHEET 3 B 5 LYS A 37 VAL A 43 1 N PHE A 41 O LEU A 75 SHEET 4 B 5 PHE A 130 ASP A 135 -1 O LEU A 132 N LEU A 40 SHEET 5 B 5 LYS A 138 ILE A 144 -1 O LYS A 140 N LEU A 133 SHEET 1 C 2 GLU A 115 LEU A 118 0 SHEET 2 C 2 GLY A 124 SER A 127 -1 O ARG A 126 N LEU A 116 SHEET 1 D 2 LYS B 14 PHE B 18 0 SHEET 2 D 2 LEU B 24 SER B 28 -1 O GLN B 25 N TYR B 17 SHEET 1 E 5 VAL B 98 ALA B 102 0 SHEET 2 E 5 GLU B 73 SER B 78 1 N CYS B 76 O LEU B 101 SHEET 3 E 5 LYS B 37 GLY B 42 1 N PHE B 41 O LEU B 75 SHEET 4 E 5 PHE B 130 ASP B 135 -1 O VAL B 134 N VAL B 38 SHEET 5 E 5 LYS B 138 ILE B 144 -1 O ASN B 143 N ALA B 131 SHEET 1 F 2 GLU B 115 LEU B 118 0 SHEET 2 F 2 GLY B 124 SER B 127 -1 O ARG B 126 N LEU B 116 SHEET 1 G 2 LYS C 14 PHE C 18 0 SHEET 2 G 2 LEU C 24 SER C 28 -1 O GLN C 25 N TYR C 17 SHEET 1 H 5 VAL C 98 ALA C 102 0 SHEET 2 H 5 GLU C 73 SER C 78 1 N CYS C 76 O LEU C 101 SHEET 3 H 5 LYS C 37 GLY C 42 1 N ILE C 39 O LEU C 75 SHEET 4 H 5 PHE C 130 ASP C 135 -1 O LEU C 132 N LEU C 40 SHEET 5 H 5 LYS C 138 ILE C 144 -1 O ASN C 143 N ALA C 131 SHEET 1 I 2 GLU C 115 ASP C 117 0 SHEET 2 I 2 THR C 125 SER C 127 -1 O ARG C 126 N LEU C 116 SHEET 1 J 2 LYS D 14 PHE D 18 0 SHEET 2 J 2 LEU D 24 SER D 28 -1 O GLN D 25 N TYR D 17 SHEET 1 K 5 VAL D 98 ALA D 102 0 SHEET 2 K 5 GLU D 73 SER D 78 1 N CYS D 76 O LEU D 101 SHEET 3 K 5 LYS D 37 VAL D 43 1 N PHE D 41 O LEU D 75 SHEET 4 K 5 PHE D 130 ASP D 135 -1 O VAL D 134 N VAL D 38 SHEET 5 K 5 LYS D 138 ILE D 144 -1 O ASN D 143 N ALA D 131 SHEET 1 L 2 GLU D 115 ASP D 117 0 SHEET 2 L 2 THR D 125 SER D 127 -1 O ARG D 126 N LEU D 116 SITE 1 AC1 6 PRO A 49 THR A 50 LYS A 121 HOH A1317 SITE 2 AC1 6 HOH A1371 HOH A1439 SITE 1 AC2 3 PRO B 49 THR B 50 HOH B1366 CRYST1 59.513 69.112 76.429 90.00 93.30 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016803 0.000000 0.000969 0.00000 SCALE2 0.000000 0.014469 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013106 0.00000