HEADER SIGNALING PROTEIN 16-JUN-04 1TPZ TITLE CRYSTAL STRUCTURE OF IIGP1: A PARADIGM FOR INTERFERON INDUCIBLE P47 TITLE 2 RESISTANCE GTPASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON-INDUCIBLE GTPASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: IIGP1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: IIGP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX4T1 KEYWDS GTPASE, INTERFERON GAMMA, DIMER, IMMUNOLOGY, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.GHOSH,R.UTHAIAH,J.HOWARD,C.HERRMANN,E.WOLF REVDAT 3 13-MAR-24 1TPZ 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1TPZ 1 VERSN REVDAT 1 21-SEP-04 1TPZ 0 JRNL AUTH A.GHOSH,R.UTHAIAH,J.HOWARD,C.HERRMANN,E.WOLF JRNL TITL CRYSTAL STRUCTURE OF IIGP1; A PARADIGM FOR JRNL TITL 2 INTERFERON-INDUCIBLE P47 RESISTANCE GTPASES JRNL REF MOL.CELL V. 15 727 2004 JRNL REFN ISSN 1097-2765 JRNL PMID 15350217 JRNL DOI 10.1016/J.MOLCEL.2004.07.017 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.C.UTHAIAH,G.J.K.PRAEFCKE,J.C.HOWARD,C.HERRMANN REMARK 1 TITL IIGP1, AN INTERFERON-GAMMA-INDUCIBLE 47-KDA GTPASE OF THE REMARK 1 TITL 2 MOUSE, SHOWING COOPERATIVE ENZYMATIC ACTIVITY AND REMARK 1 TITL 3 GTP-DEPENDENT MULTIMERIZATION REMARK 1 REF J.BIOL.CHEM. V. 278 29336 2003 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 12732635 REMARK 1 DOI 10.1074/JBC.M211973200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 70334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5742 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 5742 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6375 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 589 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.140 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TPZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022820. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.969 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72440 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12700 REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28600 REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, HEPES, MPD, PH 7.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.27000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.73500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.94500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.73500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.27000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.94500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLN A 3 REMARK 465 LEU A 4 REMARK 465 PHE A 5 REMARK 465 SER A 6 REMARK 465 SER A 7 REMARK 465 PRO A 8 REMARK 465 LYS A 9 REMARK 465 SER A 10 REMARK 465 ASP A 11 REMARK 465 GLU A 12 REMARK 465 ASN A 13 REMARK 465 GLY A 195 REMARK 465 LYS A 196 REMARK 465 PRO A 197 REMARK 465 GLN A 198 REMARK 465 THR A 199 REMARK 465 PHE A 200 REMARK 465 ASP A 201 REMARK 465 LEU A 416 REMARK 465 GLU A 417 REMARK 465 ARG A 418 REMARK 465 PRO A 419 REMARK 465 HIS A 420 REMARK 465 ARG A 421 REMARK 465 ASP A 422 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 GLN B 3 REMARK 465 LEU B 4 REMARK 465 PHE B 5 REMARK 465 SER B 6 REMARK 465 SER B 7 REMARK 465 PRO B 8 REMARK 465 LYS B 9 REMARK 465 SER B 10 REMARK 465 ASP B 11 REMARK 465 GLU B 12 REMARK 465 ASN B 13 REMARK 465 ALA B 193 REMARK 465 ASP B 194 REMARK 465 GLY B 195 REMARK 465 LYS B 196 REMARK 465 PRO B 197 REMARK 465 GLN B 198 REMARK 465 THR B 199 REMARK 465 PHE B 200 REMARK 465 ASP B 201 REMARK 465 LYS B 202 REMARK 465 LEU B 416 REMARK 465 GLU B 417 REMARK 465 ARG B 418 REMARK 465 PRO B 419 REMARK 465 HIS B 420 REMARK 465 ARG B 421 REMARK 465 ASP B 422 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 194 CG OD1 OD2 REMARK 470 ARG A 415 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 411 CG CD1 CD2 REMARK 470 LEU B 413 CG CD1 CD2 REMARK 470 ARG B 415 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 158 -101.16 -116.50 REMARK 500 PHE A 160 161.06 66.00 REMARK 500 GLU A 203 169.71 -49.09 REMARK 500 TYR A 238 -137.51 56.64 REMARK 500 ASP A 290 133.81 86.37 REMARK 500 ARG A 332 -74.89 -82.50 REMARK 500 GLU A 335 61.42 -66.83 REMARK 500 ASN A 381 -2.03 75.97 REMARK 500 ASN B 94 -8.50 -56.02 REMARK 500 THR B 158 -90.65 -125.38 REMARK 500 VAL B 205 -27.13 66.20 REMARK 500 GLU B 219 15.58 -69.19 REMARK 500 ALA B 223 99.82 77.96 REMARK 500 GLU B 224 105.30 -1.68 REMARK 500 TYR B 238 -143.31 60.30 REMARK 500 ASP B 290 134.89 85.00 REMARK 500 LEU B 377 -2.87 67.92 REMARK 500 ASN B 381 -0.35 79.21 REMARK 500 LEU B 413 2.86 -61.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 83 OG REMARK 620 2 GDP A1500 O3B 92.6 REMARK 620 3 HOH A1709 O 95.7 82.7 REMARK 620 4 HOH A1710 O 90.3 172.0 89.7 REMARK 620 5 HOH A1711 O 84.3 100.9 176.4 86.7 REMARK 620 6 HOH A1712 O 179.4 87.8 84.7 89.3 95.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 83 OG REMARK 620 2 GDP B2500 O3B 113.4 REMARK 620 3 HOH B2592 O 91.5 87.0 REMARK 620 4 HOH B2635 O 155.7 88.2 78.1 REMARK 620 5 HOH B2666 O 90.4 118.7 150.8 88.4 REMARK 620 6 HOH B2693 O 74.7 154.2 67.9 81.1 84.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 1500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 2500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 1000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F5N RELATED DB: PDB REMARK 900 RELATED ID: 1DG3 RELATED DB: PDB REMARK 900 RELATED ID: 1TQD RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT NUCLEOTIDE REMARK 900 RELATED ID: 1TQ2 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH GNP REMARK 900 RELATED ID: 1TQ4 RELATED DB: PDB REMARK 900 THE SAME PROTEIN, K48A MUTANT WITH GDP REMARK 900 RELATED ID: 1TQ6 RELATED DB: PDB REMARK 900 THE SAME PROTEIN, M173A MUTANT WITH GNP DBREF 1TPZ A 1 411 UNP Q9QZ85 IIGP1_MOUSE 1 411 DBREF 1TPZ B 1 411 UNP Q9QZ85 IIGP1_MOUSE 1 411 SEQADV 1TPZ LYS A 412 UNP Q9QZ85 CLONING ARTIFACT SEQADV 1TPZ LEU A 413 UNP Q9QZ85 CLONING ARTIFACT SEQADV 1TPZ GLY A 414 UNP Q9QZ85 CLONING ARTIFACT SEQADV 1TPZ ARG A 415 UNP Q9QZ85 CLONING ARTIFACT SEQADV 1TPZ LEU A 416 UNP Q9QZ85 CLONING ARTIFACT SEQADV 1TPZ GLU A 417 UNP Q9QZ85 CLONING ARTIFACT SEQADV 1TPZ ARG A 418 UNP Q9QZ85 CLONING ARTIFACT SEQADV 1TPZ PRO A 419 UNP Q9QZ85 CLONING ARTIFACT SEQADV 1TPZ HIS A 420 UNP Q9QZ85 CLONING ARTIFACT SEQADV 1TPZ ARG A 421 UNP Q9QZ85 CLONING ARTIFACT SEQADV 1TPZ ASP A 422 UNP Q9QZ85 CLONING ARTIFACT SEQADV 1TPZ LYS B 412 UNP Q9QZ85 CLONING ARTIFACT SEQADV 1TPZ LEU B 413 UNP Q9QZ85 CLONING ARTIFACT SEQADV 1TPZ GLY B 414 UNP Q9QZ85 CLONING ARTIFACT SEQADV 1TPZ ARG B 415 UNP Q9QZ85 CLONING ARTIFACT SEQADV 1TPZ LEU B 416 UNP Q9QZ85 CLONING ARTIFACT SEQADV 1TPZ GLU B 417 UNP Q9QZ85 CLONING ARTIFACT SEQADV 1TPZ ARG B 418 UNP Q9QZ85 CLONING ARTIFACT SEQADV 1TPZ PRO B 419 UNP Q9QZ85 CLONING ARTIFACT SEQADV 1TPZ HIS B 420 UNP Q9QZ85 CLONING ARTIFACT SEQADV 1TPZ ARG B 421 UNP Q9QZ85 CLONING ARTIFACT SEQADV 1TPZ ASP B 422 UNP Q9QZ85 CLONING ARTIFACT SEQRES 1 A 422 MET GLY GLN LEU PHE SER SER PRO LYS SER ASP GLU ASN SEQRES 2 A 422 ASN ASP LEU PRO SER SER PHE THR GLY TYR PHE LYS LYS SEQRES 3 A 422 PHE ASN THR GLY ARG LYS ILE ILE SER GLN GLU ILE LEU SEQRES 4 A 422 ASN LEU ILE GLU LEU ARG MET ARG LYS GLY ASN ILE GLN SEQRES 5 A 422 LEU THR ASN SER ALA ILE SER ASP ALA LEU LYS GLU ILE SEQRES 6 A 422 ASP SER SER VAL LEU ASN VAL ALA VAL THR GLY GLU THR SEQRES 7 A 422 GLY SER GLY LYS SER SER PHE ILE ASN THR LEU ARG GLY SEQRES 8 A 422 ILE GLY ASN GLU GLU GLU GLY ALA ALA LYS THR GLY VAL SEQRES 9 A 422 VAL GLU VAL THR MET GLU ARG HIS PRO TYR LYS HIS PRO SEQRES 10 A 422 ASN ILE PRO ASN VAL VAL PHE TRP ASP LEU PRO GLY ILE SEQRES 11 A 422 GLY SER THR ASN PHE PRO PRO ASP THR TYR LEU GLU LYS SEQRES 12 A 422 MET LYS PHE TYR GLU TYR ASP PHE PHE ILE ILE ILE SER SEQRES 13 A 422 ALA THR ARG PHE LYS LYS ASN ASP ILE ASP ILE ALA LYS SEQRES 14 A 422 ALA ILE SER MET MET LYS LYS GLU PHE TYR PHE VAL ARG SEQRES 15 A 422 THR LYS VAL ASP SER ASP ILE THR ASN GLU ALA ASP GLY SEQRES 16 A 422 LYS PRO GLN THR PHE ASP LYS GLU LYS VAL LEU GLN ASP SEQRES 17 A 422 ILE ARG LEU ASN CYS VAL ASN THR PHE ARG GLU ASN GLY SEQRES 18 A 422 ILE ALA GLU PRO PRO ILE PHE LEU LEU SER ASN LYS ASN SEQRES 19 A 422 VAL CYS HIS TYR ASP PHE PRO VAL LEU MET ASP LYS LEU SEQRES 20 A 422 ILE SER ASP LEU PRO ILE TYR LYS ARG HIS ASN PHE MET SEQRES 21 A 422 VAL SER LEU PRO ASN ILE THR ASP SER VAL ILE GLU LYS SEQRES 22 A 422 LYS ARG GLN PHE LEU LYS GLN ARG ILE TRP LEU GLU GLY SEQRES 23 A 422 PHE ALA ALA ASP LEU VAL ASN ILE ILE PRO SER LEU THR SEQRES 24 A 422 PHE LEU LEU ASP SER ASP LEU GLU THR LEU LYS LYS SER SEQRES 25 A 422 MET LYS PHE TYR ARG THR VAL PHE GLY VAL ASP GLU THR SEQRES 26 A 422 SER LEU GLN ARG LEU ALA ARG ASP TRP GLU ILE GLU VAL SEQRES 27 A 422 ASP GLN VAL GLU ALA MET ILE LYS SER PRO ALA VAL PHE SEQRES 28 A 422 LYS PRO THR ASP GLU GLU THR ILE GLN GLU ARG LEU SER SEQRES 29 A 422 ARG TYR ILE GLN GLU PHE CYS LEU ALA ASN GLY TYR LEU SEQRES 30 A 422 LEU PRO LYS ASN SER PHE LEU LYS GLU ILE PHE TYR LEU SEQRES 31 A 422 LYS TYR TYR PHE LEU ASP MET VAL THR GLU ASP ALA LYS SEQRES 32 A 422 THR LEU LEU LYS GLU ILE CYS LEU LYS LEU GLY ARG LEU SEQRES 33 A 422 GLU ARG PRO HIS ARG ASP SEQRES 1 B 422 MET GLY GLN LEU PHE SER SER PRO LYS SER ASP GLU ASN SEQRES 2 B 422 ASN ASP LEU PRO SER SER PHE THR GLY TYR PHE LYS LYS SEQRES 3 B 422 PHE ASN THR GLY ARG LYS ILE ILE SER GLN GLU ILE LEU SEQRES 4 B 422 ASN LEU ILE GLU LEU ARG MET ARG LYS GLY ASN ILE GLN SEQRES 5 B 422 LEU THR ASN SER ALA ILE SER ASP ALA LEU LYS GLU ILE SEQRES 6 B 422 ASP SER SER VAL LEU ASN VAL ALA VAL THR GLY GLU THR SEQRES 7 B 422 GLY SER GLY LYS SER SER PHE ILE ASN THR LEU ARG GLY SEQRES 8 B 422 ILE GLY ASN GLU GLU GLU GLY ALA ALA LYS THR GLY VAL SEQRES 9 B 422 VAL GLU VAL THR MET GLU ARG HIS PRO TYR LYS HIS PRO SEQRES 10 B 422 ASN ILE PRO ASN VAL VAL PHE TRP ASP LEU PRO GLY ILE SEQRES 11 B 422 GLY SER THR ASN PHE PRO PRO ASP THR TYR LEU GLU LYS SEQRES 12 B 422 MET LYS PHE TYR GLU TYR ASP PHE PHE ILE ILE ILE SER SEQRES 13 B 422 ALA THR ARG PHE LYS LYS ASN ASP ILE ASP ILE ALA LYS SEQRES 14 B 422 ALA ILE SER MET MET LYS LYS GLU PHE TYR PHE VAL ARG SEQRES 15 B 422 THR LYS VAL ASP SER ASP ILE THR ASN GLU ALA ASP GLY SEQRES 16 B 422 LYS PRO GLN THR PHE ASP LYS GLU LYS VAL LEU GLN ASP SEQRES 17 B 422 ILE ARG LEU ASN CYS VAL ASN THR PHE ARG GLU ASN GLY SEQRES 18 B 422 ILE ALA GLU PRO PRO ILE PHE LEU LEU SER ASN LYS ASN SEQRES 19 B 422 VAL CYS HIS TYR ASP PHE PRO VAL LEU MET ASP LYS LEU SEQRES 20 B 422 ILE SER ASP LEU PRO ILE TYR LYS ARG HIS ASN PHE MET SEQRES 21 B 422 VAL SER LEU PRO ASN ILE THR ASP SER VAL ILE GLU LYS SEQRES 22 B 422 LYS ARG GLN PHE LEU LYS GLN ARG ILE TRP LEU GLU GLY SEQRES 23 B 422 PHE ALA ALA ASP LEU VAL ASN ILE ILE PRO SER LEU THR SEQRES 24 B 422 PHE LEU LEU ASP SER ASP LEU GLU THR LEU LYS LYS SER SEQRES 25 B 422 MET LYS PHE TYR ARG THR VAL PHE GLY VAL ASP GLU THR SEQRES 26 B 422 SER LEU GLN ARG LEU ALA ARG ASP TRP GLU ILE GLU VAL SEQRES 27 B 422 ASP GLN VAL GLU ALA MET ILE LYS SER PRO ALA VAL PHE SEQRES 28 B 422 LYS PRO THR ASP GLU GLU THR ILE GLN GLU ARG LEU SER SEQRES 29 B 422 ARG TYR ILE GLN GLU PHE CYS LEU ALA ASN GLY TYR LEU SEQRES 30 B 422 LEU PRO LYS ASN SER PHE LEU LYS GLU ILE PHE TYR LEU SEQRES 31 B 422 LYS TYR TYR PHE LEU ASP MET VAL THR GLU ASP ALA LYS SEQRES 32 B 422 THR LEU LEU LYS GLU ILE CYS LEU LYS LEU GLY ARG LEU SEQRES 33 B 422 GLU ARG PRO HIS ARG ASP HET MG A1501 1 HET GDP A1500 28 HET MG B2501 1 HET GDP B2500 28 HET EDO B2000 4 HET MPD B1000 8 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MG 2(MG 2+) FORMUL 4 GDP 2(C10 H15 N5 O11 P2) FORMUL 7 EDO C2 H6 O2 FORMUL 8 MPD C6 H14 O2 FORMUL 9 HOH *589(H2 O) HELIX 1 1 ASP A 15 TYR A 23 1 9 HELIX 2 2 PHE A 24 PHE A 27 5 4 HELIX 3 3 ASN A 28 LYS A 32 5 5 HELIX 4 4 SER A 35 GLY A 49 1 15 HELIX 5 5 ASN A 50 SER A 68 1 19 HELIX 6 6 GLY A 81 ARG A 90 1 10 HELIX 7 7 GLY A 129 THR A 133 5 5 HELIX 8 8 PRO A 136 MET A 144 1 9 HELIX 9 9 LYS A 145 TYR A 149 5 5 HELIX 10 10 LYS A 161 MET A 173 1 13 HELIX 11 11 LYS A 184 GLU A 192 1 9 HELIX 12 12 LYS A 204 ASN A 220 1 17 HELIX 13 13 ASP A 239 LEU A 251 1 13 HELIX 14 14 PRO A 252 TYR A 254 5 3 HELIX 15 15 LYS A 255 LEU A 263 1 9 HELIX 16 16 THR A 267 ALA A 289 1 23 HELIX 17 17 LEU A 302 PHE A 320 1 19 HELIX 18 18 ASP A 323 TRP A 334 1 12 HELIX 19 19 GLU A 337 MET A 344 1 8 HELIX 20 20 ILE A 345 ILE A 345 5 1 HELIX 21 21 LYS A 346 VAL A 350 5 5 HELIX 22 22 THR A 358 GLY A 375 1 18 HELIX 23 23 LYS A 385 LYS A 412 1 28 HELIX 24 24 ASP B 15 TYR B 23 1 9 HELIX 25 25 PHE B 24 PHE B 27 5 4 HELIX 26 26 ASN B 28 LYS B 32 5 5 HELIX 27 27 SER B 35 LYS B 48 1 14 HELIX 28 28 ASN B 50 SER B 68 1 19 HELIX 29 29 GLY B 81 ARG B 90 1 10 HELIX 30 30 GLY B 129 ASN B 134 1 6 HELIX 31 31 PRO B 136 MET B 144 1 9 HELIX 32 32 LYS B 145 TYR B 149 5 5 HELIX 33 33 LYS B 161 MET B 174 1 14 HELIX 34 34 LYS B 184 GLU B 192 1 9 HELIX 35 35 VAL B 205 GLU B 219 1 15 HELIX 36 36 ASP B 239 LEU B 251 1 13 HELIX 37 37 PRO B 252 TYR B 254 5 3 HELIX 38 38 LYS B 255 LEU B 263 1 9 HELIX 39 39 THR B 267 ALA B 289 1 23 HELIX 40 40 LEU B 302 PHE B 320 1 19 HELIX 41 41 ASP B 323 TRP B 334 1 12 HELIX 42 42 GLU B 337 ALA B 343 1 7 HELIX 43 43 MET B 344 ILE B 345 5 2 HELIX 44 44 LYS B 346 VAL B 350 5 5 HELIX 45 45 THR B 358 GLY B 375 1 18 HELIX 46 46 LYS B 385 LEU B 413 1 29 SHEET 1 A 6 HIS A 112 LYS A 115 0 SHEET 2 A 6 VAL A 122 ASP A 126 -1 O PHE A 124 N TYR A 114 SHEET 3 A 6 LEU A 70 THR A 75 1 N VAL A 72 O TRP A 125 SHEET 4 A 6 PHE A 151 SER A 156 1 O ILE A 153 N ALA A 73 SHEET 5 A 6 GLU A 177 ARG A 182 1 O TYR A 179 N ILE A 154 SHEET 6 A 6 ILE A 227 LEU A 229 1 O PHE A 228 N ARG A 182 SHEET 1 B 6 HIS B 112 LYS B 115 0 SHEET 2 B 6 VAL B 122 ASP B 126 -1 O ASP B 126 N HIS B 112 SHEET 3 B 6 LEU B 70 THR B 75 1 N VAL B 72 O TRP B 125 SHEET 4 B 6 PHE B 151 SER B 156 1 O ILE B 153 N ALA B 73 SHEET 5 B 6 GLU B 177 ARG B 182 1 O TYR B 179 N ILE B 154 SHEET 6 B 6 ILE B 227 LEU B 229 1 O PHE B 228 N ARG B 182 LINK OG SER A 83 MG MG A1501 1555 1555 2.27 LINK O3B GDP A1500 MG MG A1501 1555 1555 2.13 LINK MG MG A1501 O HOH A1709 1555 1555 2.13 LINK MG MG A1501 O HOH A1710 1555 1555 2.26 LINK MG MG A1501 O HOH A1711 1555 1555 2.31 LINK MG MG A1501 O HOH A1712 1555 1555 2.35 LINK OG SER B 83 MG MG B2501 1555 1555 2.35 LINK O3B GDP B2500 MG MG B2501 1555 1555 1.77 LINK MG MG B2501 O HOH B2592 1555 1555 2.47 LINK MG MG B2501 O HOH B2635 1555 1555 2.37 LINK MG MG B2501 O HOH B2666 1555 1555 2.41 LINK MG MG B2501 O HOH B2693 1555 1555 1.51 SITE 1 AC1 6 SER A 83 GDP A1500 HOH A1709 HOH A1710 SITE 2 AC1 6 HOH A1711 HOH A1712 SITE 1 AC2 6 SER B 83 GDP B2500 HOH B2592 HOH B2635 SITE 2 AC2 6 HOH B2666 HOH B2693 SITE 1 AC3 24 GLU A 77 GLY A 79 SER A 80 GLY A 81 SITE 2 AC3 24 LYS A 82 SER A 83 SER A 84 THR A 102 SITE 3 AC3 24 GLY A 103 LYS A 184 ASP A 186 SER A 187 SITE 4 AC3 24 SER A 231 ASN A 232 LYS A 233 MG A1501 SITE 5 AC3 24 HOH A1634 HOH A1636 HOH A1641 HOH A1690 SITE 6 AC3 24 HOH A1699 HOH A1709 HOH A1711 HOH A1712 SITE 1 AC4 19 GLY B 79 SER B 80 GLY B 81 LYS B 82 SITE 2 AC4 19 SER B 83 SER B 84 THR B 102 GLY B 103 SITE 3 AC4 19 LYS B 184 ASP B 186 SER B 231 ASN B 232 SITE 4 AC4 19 LYS B 233 MG B2501 HOH B2528 HOH B2592 SITE 5 AC4 19 HOH B2635 HOH B2660 HOH B2666 SITE 1 AC5 9 HIS B 116 ASN B 118 VAL B 261 SER B 262 SITE 2 AC5 9 LEU B 263 LYS B 274 VAL B 319 HOH B2705 SITE 3 AC5 9 HOH B2728 SITE 1 AC6 7 ASN B 265 PHE B 320 GLY B 321 LEU B 330 SITE 2 AC6 7 ALA B 402 ILE B 409 HOH B2621 CRYST1 80.540 91.890 143.470 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012416 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010883 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006970 0.00000