HEADER CHAPERONE 23-JUN-04 1TTW TITLE CRYSTAL STRUCTURE OF THE YERSINIA PESTIS TYPE III SECRETION CHAPERONE TITLE 2 SYCH IN COMPLEX WITH A STABLE FRAGMENT OF YSCM2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SECRETION CHAPERONE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: YSCM2; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 214092; SOURCE 4 STRAIN: CO92; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS CHAPERONE, TYPE III SECRETION EXPDTA X-RAY DIFFRACTION AUTHOR J.PHAN,J.E.TROPEA,D.S.WAUGH REVDAT 5 14-FEB-24 1TTW 1 SEQADV REVDAT 4 11-OCT-17 1TTW 1 REMARK REVDAT 3 13-JUL-11 1TTW 1 VERSN REVDAT 2 24-FEB-09 1TTW 1 VERSN REVDAT 1 31-AUG-04 1TTW 0 JRNL AUTH J.PHAN,J.E.TROPEA,D.S.WAUGH JRNL TITL STRUCTURE OF THE YERSINIA PESTIS TYPE III SECRETION JRNL TITL 2 CHAPERONE SYCH IN COMPLEX WITH A STABLE FRAGMENT OF YSCM2. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 60 1591 2004 JRNL REFN ISSN 0907-4449 JRNL PMID 15333930 JRNL DOI 10.1107/S0907444904017597 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 7916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 388 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 563 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 993 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.61000 REMARK 3 B22 (A**2) : 0.61000 REMARK 3 B33 (A**2) : -0.91000 REMARK 3 B12 (A**2) : 0.30000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.310 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.257 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.202 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.627 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1008 ; 0.044 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 944 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1381 ; 3.518 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2171 ; 1.484 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 136 ;11.704 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 177 ; 0.193 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1140 ; 0.016 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 191 ; 0.012 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 262 ; 0.285 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1145 ; 0.278 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 699 ; 0.128 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 48 ; 0.276 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.259 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 45 ; 0.284 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.514 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 683 ; 1.897 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1076 ; 3.376 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 325 ; 4.590 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 305 ; 7.128 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1TTW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022896. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98397 REMARK 200 MONOCHROMATOR : INSERTION DEVICE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7916 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.0 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.5 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULPHATE, 200 MM REMARK 280 MAGNESIUM ACETATE, 100 MM CAPSO, 2% DIOXANE, 1.6 MM CHAPS, PH REMARK 280 9.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.08767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 108.17533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.13150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 135.21917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.04383 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.08767 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 108.17533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 135.21917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 81.13150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.04383 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 95.49600 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 55.13464 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 108.17533 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 155 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 169 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 CYS A 121 REMARK 465 GLU A 122 REMARK 465 PRO A 123 REMARK 465 THR A 124 REMARK 465 MET A 125 REMARK 465 LYS A 126 REMARK 465 LYS A 127 REMARK 465 GLU A 128 REMARK 465 GLU A 129 REMARK 465 ASP A 130 REMARK 465 ASP A 131 REMARK 465 HIS A 132 REMARK 465 ARG A 133 REMARK 465 PRO A 134 REMARK 465 SER A 135 REMARK 465 SER A 136 REMARK 465 SER A 137 REMARK 465 HIS A 138 REMARK 465 MET B 28 REMARK 465 THR B 29 REMARK 465 LEU B 30 REMARK 465 GLN B 31 REMARK 465 GLN B 32 REMARK 465 ALA B 53 REMARK 465 LYS B 54 REMARK 465 ASN B 55 REMARK 465 THR B 56 REMARK 465 ILE B 57 REMARK 465 LEU B 58 REMARK 465 ASN B 59 REMARK 465 ARG B 60 REMARK 465 GLN B 61 REMARK 465 ASP B 62 REMARK 465 VAL B 63 REMARK 465 ALA B 64 REMARK 465 LYS B 65 REMARK 465 LEU B 66 REMARK 465 LEU B 67 REMARK 465 PRO B 68 REMARK 465 ARG B 69 REMARK 465 ALA B 70 REMARK 465 SER B 71 REMARK 465 ASN B 72 REMARK 465 PHE B 73 REMARK 465 GLU B 74 REMARK 465 LEU B 75 REMARK 465 SER B 76 REMARK 465 GLN B 77 REMARK 465 HIS B 78 REMARK 465 HIS B 79 REMARK 465 HIS B 80 REMARK 465 HIS B 81 REMARK 465 HIS B 82 REMARK 465 HIS B 83 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 14 CG CD OE1 OE2 REMARK 470 LEU A 17 CG CD1 CD2 REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 ARG A 53 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 56 CG1 CG2 CD1 REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 SER B 34 OG REMARK 470 THR B 35 OG1 CG2 REMARK 470 GLN B 36 CG CD OE1 NE2 REMARK 470 ILE B 38 CG1 CG2 CD1 REMARK 470 THR B 39 OG1 CG2 REMARK 470 ASP B 41 CG OD1 OD2 REMARK 470 GLU B 42 CG CD OE1 OE2 REMARK 470 ARG B 43 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 44 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 47 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 470 HIS B 52 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 4 CD1 TYR A 4 CE1 0.109 REMARK 500 GLU A 9 CG GLU A 9 CD 0.103 REMARK 500 ALA A 41 CA ALA A 41 CB 0.132 REMARK 500 ASN A 44 CB ASN A 44 CG -0.143 REMARK 500 VAL A 49 CB VAL A 49 CG2 -0.136 REMARK 500 MET A 52 CG MET A 52 SD 0.263 REMARK 500 TYR A 64 CZ TYR A 64 CE2 0.099 REMARK 500 TRP A 89 CB TRP A 89 CG -0.156 REMARK 500 SER A 93 CA SER A 93 CB 0.107 REMARK 500 SER A 93 CB SER A 93 OG 0.091 REMARK 500 GLN A 94 CG GLN A 94 CD 0.170 REMARK 500 ALA B 37 CA ALA B 37 CB 0.141 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 64 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 LEU A 75 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 LEU A 75 CB - CG - CD1 ANGL. DEV. = 11.2 DEGREES REMARK 500 ASP A 84 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 LEU A 112 CA - CB - CG ANGL. DEV. = 18.7 DEGREES REMARK 500 ALA B 37 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 13 -72.97 -83.28 REMARK 500 GLU A 14 3.73 -36.91 REMARK 500 GLU A 19 122.32 154.83 REMARK 500 ASN A 23 -166.15 -70.66 REMARK 500 LEU A 25 20.65 -77.60 REMARK 500 ASP A 33 36.39 38.57 REMARK 500 LYS A 34 -10.85 67.20 REMARK 500 GLN A 60 -171.43 179.04 REMARK 500 SER A 61 5.32 53.54 REMARK 500 ASN A 70 54.80 -91.76 REMARK 500 ASP A 86 37.29 -88.43 REMARK 500 ALA B 37 90.25 -61.08 REMARK 500 ILE B 38 -176.41 -170.75 REMARK 500 SER B 40 -95.17 -157.07 REMARK 500 ASP B 41 63.17 -107.31 REMARK 500 GLU B 42 -38.24 -153.87 REMARK 500 ARG B 43 -9.43 -47.33 REMARK 500 ARG B 44 -80.30 -92.43 REMARK 500 ALA B 46 -80.39 -64.30 REMARK 500 TYR B 47 -45.46 -22.62 REMARK 500 LEU B 50 28.60 -47.00 REMARK 500 GLU B 51 -47.55 -166.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 55 ILE A 56 -141.96 REMARK 500 GLN B 36 ALA B 37 -149.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 44 -14.06 REMARK 500 REMARK 500 REMARK: NULL DBREF 1TTW A 1 138 UNP Q7ARG9 Q7ARG9_YERPE 1 138 DBREF 1TTW B 29 77 GB 28373010 NP_783723 33 81 SEQADV 1TTW MET B 28 GB 28373010 INSERTION SEQADV 1TTW HIS B 78 GB 28373010 INSERTION SEQADV 1TTW HIS B 79 GB 28373010 INSERTION SEQADV 1TTW HIS B 80 GB 28373010 INSERTION SEQADV 1TTW HIS B 81 GB 28373010 INSERTION SEQADV 1TTW HIS B 82 GB 28373010 INSERTION SEQADV 1TTW HIS B 83 GB 28373010 INSERTION SEQRES 1 A 138 MET ARG THR TYR SER SER LEU LEU GLU GLU PHE ALA THR SEQRES 2 A 138 GLU LEU GLY LEU GLU GLU ILE GLU THR ASN GLU LEU GLY SEQRES 3 A 138 HIS GLY ALA VAL THR ILE ASP LYS ILE TRP VAL VAL HIS SEQRES 4 A 138 LEU ALA PRO ILE ASN GLU LYS GLU LEU VAL ALA PHE MET SEQRES 5 A 138 ARG ALA GLY ILE LEU THR GLY GLN SER GLN LEU TYR ASP SEQRES 6 A 138 ILE LEU ARG LYS ASN LEU PHE SER PRO LEU SER GLY VAL SEQRES 7 A 138 ILE ARG CYS ALA LEU ASP LYS ASP ASP HIS TRP LEU LEU SEQRES 8 A 138 TRP SER GLN LEU ASN ILE ASN ASP THR SER GLY THR GLN SEQRES 9 A 138 LEU ALA SER VAL LEU THR SER LEU VAL ASP LYS ALA VAL SEQRES 10 A 138 THR LEU SER CYS GLU PRO THR MET LYS LYS GLU GLU ASP SEQRES 11 A 138 ASP HIS ARG PRO SER SER SER HIS SEQRES 1 B 56 MET THR LEU GLN GLN VAL SER THR GLN ALA ILE THR SER SEQRES 2 B 56 ASP GLU ARG ARG PHE ALA TYR ALA VAL LEU GLU HIS ALA SEQRES 3 B 56 LYS ASN THR ILE LEU ASN ARG GLN ASP VAL ALA LYS LEU SEQRES 4 B 56 LEU PRO ARG ALA SER ASN PHE GLU LEU SER GLN HIS HIS SEQRES 5 B 56 HIS HIS HIS HIS FORMUL 3 HOH *41(H2 O) HELIX 1 1 THR A 3 ALA A 12 1 10 HELIX 2 2 SER A 61 LYS A 69 1 9 HELIX 3 3 SER A 101 SER A 120 1 20 HELIX 4 4 ASP B 41 LEU B 50 1 10 SHEET 1 A 5 GLY A 28 ILE A 32 0 SHEET 2 A 5 TRP A 36 PRO A 42 -1 O TRP A 36 N ILE A 32 SHEET 3 A 5 GLU A 47 ILE A 56 -1 O PHE A 51 N HIS A 39 SHEET 4 A 5 HIS A 88 ASN A 96 -1 O LEU A 95 N LEU A 48 SHEET 5 A 5 ARG A 80 LEU A 83 -1 N ALA A 82 O LEU A 90 CRYST1 63.664 63.664 162.263 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015707 0.009069 0.000000 0.00000 SCALE2 0.000000 0.018137 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006163 0.00000