HEADER TRANSFERASE 24-JUN-04 1TU8 TITLE STRUCTURE OF ONCHOVERCA VOLVULUS PI-CLASS GLUTATHIONE S-TRANSFERASE TITLE 2 WITH ITS KOMPETITIVE INHIBITOR S-HEXYL-GSH COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE S-TRANSFERASE 2; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: GLUTATHIONE S-TRANSFERASE, GST CLASS-PI; COMPND 5 EC: 2.5.1.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ONCHOCERCA VOLVULUS; SOURCE 3 ORGANISM_TAXID: 6282; SOURCE 4 GENE: GST2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PLYSS KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.PERBANDT REVDAT 5 13-MAR-24 1TU8 1 REMARK REVDAT 4 03-OCT-18 1TU8 1 REMARK REVDAT 3 24-FEB-09 1TU8 1 VERSN REVDAT 2 12-APR-05 1TU8 1 JRNL REVDAT 1 11-JAN-05 1TU8 0 JRNL AUTH M.PERBANDT,J.HOPPNER,C.BETZEL,R.D.WALTER,E.LIEBAU JRNL TITL STRUCTURE OF THE MAJOR CYTOSOLIC GLUTATHIONE S-TRANSFERASE JRNL TITL 2 FROM THE PARASITIC NEMATODE ONCHOCERCA VOLVULUS JRNL REF J.BIOL.CHEM. V. 280 12630 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15640152 JRNL DOI 10.1074/JBC.M413551200 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 77235 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4062 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5453 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 292 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6824 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 754 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.64000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.27000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.509 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6998 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 6352 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9402 ; 1.345 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14826 ; 0.904 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 828 ; 5.119 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 992 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7676 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1424 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1433 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 7316 ; 0.245 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3717 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 482 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.307 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 98 ; 0.259 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 39 ; 0.452 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4140 ; 0.689 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6654 ; 1.294 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2858 ; 2.268 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2748 ; 3.681 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1TU8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022908. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-04 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77235 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.99950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 118 CG CD CE NZ REMARK 480 LYS B 35 CG CD CE NZ REMARK 480 LYS B 146 CD CE NZ REMARK 480 LYS C 118 CG CD CE NZ REMARK 480 LYS D 35 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 25 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 103 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 ARG A 103 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP A 196 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 55 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 103 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP B 184 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP C 25 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG C 103 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG C 139 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP C 145 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP C 196 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP D 30 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG D 103 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP D 170 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP D 184 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 62 106.09 81.12 REMARK 500 ALA A 108 44.85 -163.51 REMARK 500 ASN A 137 17.68 53.43 REMARK 500 ASN A 140 -109.41 -129.99 REMARK 500 GLN B 62 108.19 76.08 REMARK 500 ALA B 108 41.99 -162.98 REMARK 500 ASN B 137 17.31 57.03 REMARK 500 ASN B 140 -105.28 -132.19 REMARK 500 GLN C 62 105.21 80.98 REMARK 500 ALA C 108 43.08 -160.20 REMARK 500 ASN C 137 15.50 59.18 REMARK 500 ASN C 140 -110.42 -130.53 REMARK 500 GLN D 62 106.74 78.95 REMARK 500 ALA D 108 39.94 -156.61 REMARK 500 ASN D 137 12.76 59.02 REMARK 500 ASN D 140 -109.23 -135.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 103 0.13 SIDE CHAIN REMARK 500 ARG C 103 0.19 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTX A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTX B 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTX D 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTX C 2004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TU7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH GLUTATHIONE DBREF 1TU8 A 1 208 UNP P46427 GSTP_ONCVO 1 208 DBREF 1TU8 B 1 208 UNP P46427 GSTP_ONCVO 1 208 DBREF 1TU8 C 1 208 UNP P46427 GSTP_ONCVO 1 208 DBREF 1TU8 D 1 208 UNP P46427 GSTP_ONCVO 1 208 SEQADV 1TU8 VAL A 177 UNP P46427 ALA 177 SEE REMARK 999 SEQADV 1TU8 VAL B 177 UNP P46427 ALA 177 SEE REMARK 999 SEQADV 1TU8 VAL C 177 UNP P46427 ALA 177 SEE REMARK 999 SEQADV 1TU8 VAL D 177 UNP P46427 ALA 177 SEE REMARK 999 SEQRES 1 A 208 MET SER TYR LYS LEU THR TYR PHE SER ILE ARG GLY LEU SEQRES 2 A 208 ALA GLU PRO ILE ARG LEU PHE LEU VAL ASP GLN ASP ILE SEQRES 3 A 208 LYS PHE ILE ASP ASP ARG ILE ALA LYS ASP ASP PHE SER SEQRES 4 A 208 SER ILE LYS SER GLN PHE GLN PHE GLY GLN LEU PRO CYS SEQRES 5 A 208 LEU TYR ASP GLY ASP GLN GLN ILE VAL GLN SER GLY ALA SEQRES 6 A 208 ILE LEU ARG HIS LEU ALA ARG LYS TYR ASN LEU ASN GLY SEQRES 7 A 208 GLU ASN GLU MET GLU THR THR TYR ILE ASP MET PHE CYS SEQRES 8 A 208 GLU GLY VAL ARG ASP LEU HIS VAL LYS TYR THR ARG MET SEQRES 9 A 208 ILE TYR MET ALA TYR GLU THR GLU LYS ASP PRO TYR ILE SEQRES 10 A 208 LYS SER ILE LEU PRO GLY GLU LEU ALA LYS PHE GLU LYS SEQRES 11 A 208 LEU LEU ALA THR ARG GLY ASN GLY ARG ASN LEU ILE LEU SEQRES 12 A 208 GLY ASP LYS ILE SER TYR ALA ASP TYR ALA LEU PHE GLU SEQRES 13 A 208 GLU LEU ASP VAL HIS GLN ILE LEU ASP PRO HIS CYS LEU SEQRES 14 A 208 ASP LYS PHE PRO LEU LEU LYS VAL PHE HIS GLN ARG MET SEQRES 15 A 208 LYS ASP ARG PRO LYS LEU LYS GLU TYR CYS GLU LYS ARG SEQRES 16 A 208 ASP ALA ALA LYS VAL PRO VAL ASN GLY ASN GLY LYS GLN SEQRES 1 B 208 MET SER TYR LYS LEU THR TYR PHE SER ILE ARG GLY LEU SEQRES 2 B 208 ALA GLU PRO ILE ARG LEU PHE LEU VAL ASP GLN ASP ILE SEQRES 3 B 208 LYS PHE ILE ASP ASP ARG ILE ALA LYS ASP ASP PHE SER SEQRES 4 B 208 SER ILE LYS SER GLN PHE GLN PHE GLY GLN LEU PRO CYS SEQRES 5 B 208 LEU TYR ASP GLY ASP GLN GLN ILE VAL GLN SER GLY ALA SEQRES 6 B 208 ILE LEU ARG HIS LEU ALA ARG LYS TYR ASN LEU ASN GLY SEQRES 7 B 208 GLU ASN GLU MET GLU THR THR TYR ILE ASP MET PHE CYS SEQRES 8 B 208 GLU GLY VAL ARG ASP LEU HIS VAL LYS TYR THR ARG MET SEQRES 9 B 208 ILE TYR MET ALA TYR GLU THR GLU LYS ASP PRO TYR ILE SEQRES 10 B 208 LYS SER ILE LEU PRO GLY GLU LEU ALA LYS PHE GLU LYS SEQRES 11 B 208 LEU LEU ALA THR ARG GLY ASN GLY ARG ASN LEU ILE LEU SEQRES 12 B 208 GLY ASP LYS ILE SER TYR ALA ASP TYR ALA LEU PHE GLU SEQRES 13 B 208 GLU LEU ASP VAL HIS GLN ILE LEU ASP PRO HIS CYS LEU SEQRES 14 B 208 ASP LYS PHE PRO LEU LEU LYS VAL PHE HIS GLN ARG MET SEQRES 15 B 208 LYS ASP ARG PRO LYS LEU LYS GLU TYR CYS GLU LYS ARG SEQRES 16 B 208 ASP ALA ALA LYS VAL PRO VAL ASN GLY ASN GLY LYS GLN SEQRES 1 C 208 MET SER TYR LYS LEU THR TYR PHE SER ILE ARG GLY LEU SEQRES 2 C 208 ALA GLU PRO ILE ARG LEU PHE LEU VAL ASP GLN ASP ILE SEQRES 3 C 208 LYS PHE ILE ASP ASP ARG ILE ALA LYS ASP ASP PHE SER SEQRES 4 C 208 SER ILE LYS SER GLN PHE GLN PHE GLY GLN LEU PRO CYS SEQRES 5 C 208 LEU TYR ASP GLY ASP GLN GLN ILE VAL GLN SER GLY ALA SEQRES 6 C 208 ILE LEU ARG HIS LEU ALA ARG LYS TYR ASN LEU ASN GLY SEQRES 7 C 208 GLU ASN GLU MET GLU THR THR TYR ILE ASP MET PHE CYS SEQRES 8 C 208 GLU GLY VAL ARG ASP LEU HIS VAL LYS TYR THR ARG MET SEQRES 9 C 208 ILE TYR MET ALA TYR GLU THR GLU LYS ASP PRO TYR ILE SEQRES 10 C 208 LYS SER ILE LEU PRO GLY GLU LEU ALA LYS PHE GLU LYS SEQRES 11 C 208 LEU LEU ALA THR ARG GLY ASN GLY ARG ASN LEU ILE LEU SEQRES 12 C 208 GLY ASP LYS ILE SER TYR ALA ASP TYR ALA LEU PHE GLU SEQRES 13 C 208 GLU LEU ASP VAL HIS GLN ILE LEU ASP PRO HIS CYS LEU SEQRES 14 C 208 ASP LYS PHE PRO LEU LEU LYS VAL PHE HIS GLN ARG MET SEQRES 15 C 208 LYS ASP ARG PRO LYS LEU LYS GLU TYR CYS GLU LYS ARG SEQRES 16 C 208 ASP ALA ALA LYS VAL PRO VAL ASN GLY ASN GLY LYS GLN SEQRES 1 D 208 MET SER TYR LYS LEU THR TYR PHE SER ILE ARG GLY LEU SEQRES 2 D 208 ALA GLU PRO ILE ARG LEU PHE LEU VAL ASP GLN ASP ILE SEQRES 3 D 208 LYS PHE ILE ASP ASP ARG ILE ALA LYS ASP ASP PHE SER SEQRES 4 D 208 SER ILE LYS SER GLN PHE GLN PHE GLY GLN LEU PRO CYS SEQRES 5 D 208 LEU TYR ASP GLY ASP GLN GLN ILE VAL GLN SER GLY ALA SEQRES 6 D 208 ILE LEU ARG HIS LEU ALA ARG LYS TYR ASN LEU ASN GLY SEQRES 7 D 208 GLU ASN GLU MET GLU THR THR TYR ILE ASP MET PHE CYS SEQRES 8 D 208 GLU GLY VAL ARG ASP LEU HIS VAL LYS TYR THR ARG MET SEQRES 9 D 208 ILE TYR MET ALA TYR GLU THR GLU LYS ASP PRO TYR ILE SEQRES 10 D 208 LYS SER ILE LEU PRO GLY GLU LEU ALA LYS PHE GLU LYS SEQRES 11 D 208 LEU LEU ALA THR ARG GLY ASN GLY ARG ASN LEU ILE LEU SEQRES 12 D 208 GLY ASP LYS ILE SER TYR ALA ASP TYR ALA LEU PHE GLU SEQRES 13 D 208 GLU LEU ASP VAL HIS GLN ILE LEU ASP PRO HIS CYS LEU SEQRES 14 D 208 ASP LYS PHE PRO LEU LEU LYS VAL PHE HIS GLN ARG MET SEQRES 15 D 208 LYS ASP ARG PRO LYS LEU LYS GLU TYR CYS GLU LYS ARG SEQRES 16 D 208 ASP ALA ALA LYS VAL PRO VAL ASN GLY ASN GLY LYS GLN HET GTX A2001 26 HET GTX B2002 26 HET GTX C2004 26 HET GTX D2003 26 HETNAM GTX S-HEXYLGLUTATHIONE FORMUL 5 GTX 4(C16 H30 N3 O6 S 1+) FORMUL 9 HOH *754(H2 O) HELIX 1 1 ARG A 11 LEU A 13 5 3 HELIX 2 2 ALA A 14 GLN A 24 1 11 HELIX 3 3 ALA A 34 ASP A 36 5 3 HELIX 4 4 ASP A 37 LYS A 42 1 6 HELIX 5 5 SER A 43 PHE A 45 5 3 HELIX 6 6 GLN A 62 TYR A 74 1 13 HELIX 7 7 ASN A 80 ALA A 108 1 29 HELIX 8 8 ALA A 108 ILE A 120 1 13 HELIX 9 9 ILE A 120 ALA A 133 1 14 HELIX 10 10 THR A 134 ARG A 139 5 6 HELIX 11 11 SER A 148 ASP A 165 1 18 HELIX 12 12 PHE A 172 ASP A 184 1 13 HELIX 13 13 ARG A 185 ALA A 198 1 14 HELIX 14 14 ARG B 11 LEU B 13 5 3 HELIX 15 15 ALA B 14 ASP B 25 1 12 HELIX 16 16 ALA B 34 ASP B 36 5 3 HELIX 17 17 ASP B 37 LYS B 42 1 6 HELIX 18 18 SER B 43 PHE B 45 5 3 HELIX 19 19 GLN B 62 TYR B 74 1 13 HELIX 20 20 ASN B 80 ALA B 108 1 29 HELIX 21 21 ALA B 108 ILE B 120 1 13 HELIX 22 22 ILE B 120 ALA B 133 1 14 HELIX 23 23 THR B 134 ARG B 139 5 6 HELIX 24 24 SER B 148 ASP B 165 1 18 HELIX 25 25 PHE B 172 ARG B 185 1 14 HELIX 26 26 ARG B 185 ALA B 198 1 14 HELIX 27 27 ARG C 11 LEU C 13 5 3 HELIX 28 28 ALA C 14 GLN C 24 1 11 HELIX 29 29 ALA C 34 ASP C 36 5 3 HELIX 30 30 ASP C 37 LYS C 42 1 6 HELIX 31 31 SER C 43 PHE C 45 5 3 HELIX 32 32 GLN C 62 TYR C 74 1 13 HELIX 33 33 ASN C 80 ILE C 120 1 41 HELIX 34 34 ILE C 120 ALA C 133 1 14 HELIX 35 35 THR C 134 ARG C 139 5 6 HELIX 36 36 SER C 148 ASP C 165 1 18 HELIX 37 37 PHE C 172 ASP C 184 1 13 HELIX 38 38 ARG C 185 ALA C 198 1 14 HELIX 39 39 ARG D 11 LEU D 13 5 3 HELIX 40 40 ALA D 14 GLN D 24 1 11 HELIX 41 41 ALA D 34 PHE D 38 5 5 HELIX 42 42 ILE D 41 PHE D 45 5 5 HELIX 43 43 GLN D 62 ASN D 75 1 14 HELIX 44 44 ASN D 80 ALA D 108 1 29 HELIX 45 45 ALA D 108 ILE D 120 1 13 HELIX 46 46 ILE D 120 ALA D 133 1 14 HELIX 47 47 THR D 134 ARG D 139 5 6 HELIX 48 48 SER D 148 ASP D 165 1 18 HELIX 49 49 PHE D 172 ARG D 185 1 14 HELIX 50 50 ARG D 185 ALA D 198 1 14 SHEET 1 A 4 ILE A 29 ILE A 33 0 SHEET 2 A 4 TYR A 3 PHE A 8 1 N LEU A 5 O ILE A 29 SHEET 3 A 4 CYS A 52 ASP A 55 -1 O CYS A 52 N THR A 6 SHEET 4 A 4 GLN A 58 VAL A 61 -1 O ILE A 60 N LEU A 53 SHEET 1 B 4 ILE B 29 ILE B 33 0 SHEET 2 B 4 TYR B 3 PHE B 8 1 N LEU B 5 O ILE B 29 SHEET 3 B 4 CYS B 52 ASP B 55 -1 O TYR B 54 N LYS B 4 SHEET 4 B 4 GLN B 58 VAL B 61 -1 O ILE B 60 N LEU B 53 SHEET 1 C 4 ILE C 29 ILE C 33 0 SHEET 2 C 4 TYR C 3 PHE C 8 1 N LEU C 5 O ILE C 29 SHEET 3 C 4 CYS C 52 ASP C 55 -1 O TYR C 54 N LYS C 4 SHEET 4 C 4 GLN C 58 VAL C 61 -1 O ILE C 60 N LEU C 53 SHEET 1 D 4 ILE D 29 ILE D 33 0 SHEET 2 D 4 TYR D 3 PHE D 8 1 N LEU D 5 O ILE D 29 SHEET 3 D 4 CYS D 52 ASP D 55 -1 O TYR D 54 N LYS D 4 SHEET 4 D 4 GLN D 58 VAL D 61 -1 O ILE D 60 N LEU D 53 CISPEP 1 LEU A 50 PRO A 51 0 8.16 CISPEP 2 LEU B 50 PRO B 51 0 7.58 CISPEP 3 LEU C 50 PRO C 51 0 6.81 CISPEP 4 LEU D 50 PRO D 51 0 7.48 SITE 1 AC1 18 TYR A 7 PHE A 8 LEU A 13 PHE A 38 SITE 2 AC1 18 LYS A 42 GLN A 49 LEU A 50 PRO A 51 SITE 3 AC1 18 GLN A 62 SER A 63 ARG A 95 TYR A 106 SITE 4 AC1 18 HOH A2004 HOH A2111 HOH A2127 HOH A2183 SITE 5 AC1 18 ASP B 96 HOH B2078 SITE 1 AC2 18 ASP A 96 HOH A2124 TYR B 7 PHE B 8 SITE 2 AC2 18 ILE B 10 LEU B 13 PHE B 38 GLN B 49 SITE 3 AC2 18 LEU B 50 PRO B 51 GLN B 62 SER B 63 SITE 4 AC2 18 ARG B 95 TYR B 106 HOH B2003 HOH B2123 SITE 5 AC2 18 HOH B2133 HOH B2175 SITE 1 AC3 18 ASP C 96 TYR D 7 PHE D 8 ILE D 10 SITE 2 AC3 18 LEU D 13 PHE D 38 LYS D 42 GLN D 49 SITE 3 AC3 18 LEU D 50 PRO D 51 GLN D 62 SER D 63 SITE 4 AC3 18 ARG D 95 TYR D 106 HOH D2095 HOH D2139 SITE 5 AC3 18 HOH D2162 HOH D2181 SITE 1 AC4 17 TYR C 7 PHE C 8 LEU C 13 PHE C 38 SITE 2 AC4 17 LYS C 42 GLN C 49 LEU C 50 PRO C 51 SITE 3 AC4 17 GLN C 62 SER C 63 ARG C 95 TYR C 106 SITE 4 AC4 17 HOH C2009 HOH C2129 HOH C2142 HOH C2154 SITE 5 AC4 17 ASP D 96 CRYST1 51.968 81.999 107.110 90.00 91.23 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019243 0.000000 0.000412 0.00000 SCALE2 0.000000 0.012195 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009338 0.00000