HEADER LYASE 24-JUN-04 1TUF TITLE CRYSTAL STRUCTURE OF DIAMINOPIMELATE DECARBOXYLASE FROM M. JANNASCHI COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIAMINOPIMELATE DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DAP DECARBOXYLASE; COMPND 5 EC: 4.1.1.20; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: LYSA, MJ1097; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET T7 KEYWDS ANTIBIOTIC RESISTANCE, DIAMNOPIMILATE DECARBOXYLASE, LYSINE KEYWDS 2 BIOSYNTHESIS, STRUCTURAL GENOMICS, NYSGXRC, T135, PSI, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR K.RAJASHANKAR,S.R.RAY,J.B.BONANNO,M.G.PINHO,G.HE,H.DE LENCASTRE, AUTHOR 2 A.TOMASZ,S.K.BURLEY,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (NYSGXRC) REVDAT 6 03-APR-24 1TUF 1 REMARK REVDAT 5 15-NOV-23 1TUF 1 ATOM REVDAT 4 03-FEB-21 1TUF 1 AUTHOR JRNL REMARK SEQADV REVDAT 4 2 1 LINK REVDAT 3 24-FEB-09 1TUF 1 VERSN REVDAT 2 25-JAN-05 1TUF 1 AUTHOR KEYWDS REMARK REVDAT 1 20-JUL-04 1TUF 0 JRNL AUTH K.RAJASHANKAR,S.R.RAY,J.B.BONANNO,M.G.PINHO,G.HE, JRNL AUTH 2 H.DE LENCASTRE,A.TOMASZ,S.K.BURLEY JRNL TITL COCRYSTAL STRUCTURES OF DIAMINOPIMELATE DECARBOXYLASE: JRNL TITL 2 MECHANISM, EVOLUTION, AND INHIBITION OF AN ANTIBIOTIC JRNL TITL 3 RESISTANCE ACCESSORY FACTOR JRNL REF STRUCTURE V. 10 1499 2002 JRNL REFN ISSN 0969-2126 JRNL PMID 12429091 JRNL DOI 10.1016/S0969-2126(02)00880-8 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 493146.240 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.3 REMARK 3 NUMBER OF REFLECTIONS : 35468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1765 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3682 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 189 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6824 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 292 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.60000 REMARK 3 B22 (A**2) : 6.60000 REMARK 3 B33 (A**2) : -13.21000 REMARK 3 B12 (A**2) : 4.90000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.28 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.38 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.40 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.710 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.320 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.160 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.090 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.150 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 31.69 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : PLL.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : PLL.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DATA IS COMPLETE TO 2.6A. 2.6 TO 2.4 REMARK 3 SHELL IS LESS COMPLETE (~60%), HOWEVER THIS DATA WAS USED IN REMARK 3 REFINEMENT. REMARK 4 REMARK 4 1TUF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-04. REMARK 100 THE DEPOSITION ID IS D_1000022912. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-01; 28-APR-01 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; CHESS REMARK 200 BEAMLINE : X25; F2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4; 1.07 REMARK 200 MONOCHROMATOR : SI(111); SI(111) REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS - B4; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36391 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 53.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29200 REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: MODEL BUILT WITH ELECTRON DENSITY MAP CALCULATED REMARK 200 USING A PLATINUM DERIVATIVE. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG6000, 0.1M TRIS-HCL, 20MM REMARK 280 MGCL2, 25MM AZELAIC ACID, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 169.50100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 339.00200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 254.25150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 423.75250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 84.75050 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 169.50100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 339.00200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 423.75250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 254.25150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 84.75050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: PROTOMERS A AND B TOGETHER FORM THE BIOLOGICAL ASSEMBLY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 84.75050 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 18 78.81 -102.58 REMARK 500 GLU A 69 32.90 -94.50 REMARK 500 GLU A 70 -49.23 -132.25 REMARK 500 ASN A 85 112.50 -178.95 REMARK 500 THR A 230 42.45 -107.53 REMARK 500 PRO A 268 56.18 -67.16 REMARK 500 LYS A 291 -0.26 -58.56 REMARK 500 GLU A 304 65.07 -118.98 REMARK 500 ASP A 335 7.22 -68.82 REMARK 500 ASN A 360 41.95 -85.44 REMARK 500 LYS A 386 112.28 -27.24 REMARK 500 HIS A 446 0.66 -69.75 REMARK 500 LYS B 24 -97.84 -84.94 REMARK 500 ASN B 85 111.47 174.98 REMARK 500 ALA B 144 148.56 -173.61 REMARK 500 THR B 181 -76.79 -48.86 REMARK 500 LEU B 189 10.17 -65.84 REMARK 500 GLU B 304 59.86 -116.75 REMARK 500 SER B 308 0.44 -68.04 REMARK 500 THR B 312 0.12 -69.06 REMARK 500 LYS B 386 114.46 -26.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZ1 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AZ1 B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-T135 RELATED DB: TARGETDB DBREF 1TUF A 15 448 UNP Q58497 DCDA_METJA 5 438 DBREF 1TUF B 15 448 UNP Q58497 DCDA_METJA 5 438 SEQADV 1TUF LLP A 83 UNP Q58497 LYS 73 MODIFIED RESIDUE SEQADV 1TUF LLP B 83 UNP Q58497 LYS 73 MODIFIED RESIDUE SEQRES 1 A 434 PHE LEU GLY ASN ASP THR VAL GLU ILE LYS ASP GLY ARG SEQRES 2 A 434 PHE PHE ILE ASP GLY TYR ASP ALA ILE GLU LEU ALA GLU SEQRES 3 A 434 LYS PHE GLY THR PRO LEU TYR VAL MET SER GLU GLU GLN SEQRES 4 A 434 ILE LYS ILE ASN TYR ASN ARG TYR ILE GLU ALA PHE LYS SEQRES 5 A 434 ARG TRP GLU GLU GLU THR GLY LYS GLU PHE ILE VAL ALA SEQRES 6 A 434 TYR ALA TYR LLP ALA ASN ALA ASN LEU ALA ILE THR ARG SEQRES 7 A 434 LEU LEU ALA LYS LEU GLY CYS GLY ALA ASP VAL VAL SER SEQRES 8 A 434 GLY GLY GLU LEU TYR ILE ALA LYS LEU SER ASN VAL PRO SEQRES 9 A 434 SER LYS LYS ILE VAL PHE ASN GLY ASN CYS LYS THR LYS SEQRES 10 A 434 GLU GLU ILE ILE MET GLY ILE GLU ALA ASN ILE ARG ALA SEQRES 11 A 434 PHE ASN VAL ASP SER ILE SER GLU LEU ILE LEU ILE ASN SEQRES 12 A 434 GLU THR ALA LYS GLU LEU GLY GLU THR ALA ASN VAL ALA SEQRES 13 A 434 PHE ARG ILE ASN PRO ASN VAL ASN PRO LYS THR HIS PRO SEQRES 14 A 434 LYS ILE SER THR GLY LEU LYS LYS ASN LYS PHE GLY LEU SEQRES 15 A 434 ASP VAL GLU SER GLY ILE ALA MET LYS ALA ILE LYS MET SEQRES 16 A 434 ALA LEU GLU MET GLU TYR VAL ASN VAL VAL GLY VAL HIS SEQRES 17 A 434 CYS HIS ILE GLY SER GLN LEU THR ASP ILE SER PRO PHE SEQRES 18 A 434 ILE GLU GLU THR ARG LYS VAL MET ASP PHE VAL VAL GLU SEQRES 19 A 434 LEU LYS GLU GLU GLY ILE GLU ILE GLU ASP VAL ASN LEU SEQRES 20 A 434 GLY GLY GLY LEU GLY ILE PRO TYR TYR LYS ASP LYS GLN SEQRES 21 A 434 ILE PRO THR GLN LYS ASP LEU ALA ASP ALA ILE ILE ASN SEQRES 22 A 434 THR MET LEU LYS TYR LYS ASP LYS VAL GLU MET PRO ASN SEQRES 23 A 434 LEU ILE LEU GLU PRO GLY ARG SER LEU VAL ALA THR ALA SEQRES 24 A 434 GLY TYR LEU LEU GLY LYS VAL HIS HIS ILE LYS GLU THR SEQRES 25 A 434 PRO VAL THR LYS TRP VAL MET ILE ASP ALA GLY MET ASN SEQRES 26 A 434 ASP MET MET ARG PRO ALA MET TYR GLU ALA TYR HIS HIS SEQRES 27 A 434 ILE ILE ASN CYS LYS VAL LYS ASN GLU LYS GLU VAL VAL SEQRES 28 A 434 SER ILE ALA GLY GLY LEU CYS GLU SER SER ASP VAL PHE SEQRES 29 A 434 GLY ARG ASP ARG GLU LEU ASP LYS VAL GLU VAL GLY ASP SEQRES 30 A 434 VAL LEU ALA ILE PHE ASP VAL GLY ALA TYR GLY ILE SER SEQRES 31 A 434 MET ALA ASN ASN TYR ASN ALA ARG GLY ARG PRO ARG MET SEQRES 32 A 434 VAL LEU THR SER LYS LYS GLY VAL PHE LEU ILE ARG GLU SEQRES 33 A 434 ARG GLU THR TYR ALA ASP LEU ILE ALA LYS ASP ILE VAL SEQRES 34 A 434 PRO PRO HIS LEU LEU SEQRES 1 B 434 PHE LEU GLY ASN ASP THR VAL GLU ILE LYS ASP GLY ARG SEQRES 2 B 434 PHE PHE ILE ASP GLY TYR ASP ALA ILE GLU LEU ALA GLU SEQRES 3 B 434 LYS PHE GLY THR PRO LEU TYR VAL MET SER GLU GLU GLN SEQRES 4 B 434 ILE LYS ILE ASN TYR ASN ARG TYR ILE GLU ALA PHE LYS SEQRES 5 B 434 ARG TRP GLU GLU GLU THR GLY LYS GLU PHE ILE VAL ALA SEQRES 6 B 434 TYR ALA TYR LLP ALA ASN ALA ASN LEU ALA ILE THR ARG SEQRES 7 B 434 LEU LEU ALA LYS LEU GLY CYS GLY ALA ASP VAL VAL SER SEQRES 8 B 434 GLY GLY GLU LEU TYR ILE ALA LYS LEU SER ASN VAL PRO SEQRES 9 B 434 SER LYS LYS ILE VAL PHE ASN GLY ASN CYS LYS THR LYS SEQRES 10 B 434 GLU GLU ILE ILE MET GLY ILE GLU ALA ASN ILE ARG ALA SEQRES 11 B 434 PHE ASN VAL ASP SER ILE SER GLU LEU ILE LEU ILE ASN SEQRES 12 B 434 GLU THR ALA LYS GLU LEU GLY GLU THR ALA ASN VAL ALA SEQRES 13 B 434 PHE ARG ILE ASN PRO ASN VAL ASN PRO LYS THR HIS PRO SEQRES 14 B 434 LYS ILE SER THR GLY LEU LYS LYS ASN LYS PHE GLY LEU SEQRES 15 B 434 ASP VAL GLU SER GLY ILE ALA MET LYS ALA ILE LYS MET SEQRES 16 B 434 ALA LEU GLU MET GLU TYR VAL ASN VAL VAL GLY VAL HIS SEQRES 17 B 434 CYS HIS ILE GLY SER GLN LEU THR ASP ILE SER PRO PHE SEQRES 18 B 434 ILE GLU GLU THR ARG LYS VAL MET ASP PHE VAL VAL GLU SEQRES 19 B 434 LEU LYS GLU GLU GLY ILE GLU ILE GLU ASP VAL ASN LEU SEQRES 20 B 434 GLY GLY GLY LEU GLY ILE PRO TYR TYR LYS ASP LYS GLN SEQRES 21 B 434 ILE PRO THR GLN LYS ASP LEU ALA ASP ALA ILE ILE ASN SEQRES 22 B 434 THR MET LEU LYS TYR LYS ASP LYS VAL GLU MET PRO ASN SEQRES 23 B 434 LEU ILE LEU GLU PRO GLY ARG SER LEU VAL ALA THR ALA SEQRES 24 B 434 GLY TYR LEU LEU GLY LYS VAL HIS HIS ILE LYS GLU THR SEQRES 25 B 434 PRO VAL THR LYS TRP VAL MET ILE ASP ALA GLY MET ASN SEQRES 26 B 434 ASP MET MET ARG PRO ALA MET TYR GLU ALA TYR HIS HIS SEQRES 27 B 434 ILE ILE ASN CYS LYS VAL LYS ASN GLU LYS GLU VAL VAL SEQRES 28 B 434 SER ILE ALA GLY GLY LEU CYS GLU SER SER ASP VAL PHE SEQRES 29 B 434 GLY ARG ASP ARG GLU LEU ASP LYS VAL GLU VAL GLY ASP SEQRES 30 B 434 VAL LEU ALA ILE PHE ASP VAL GLY ALA TYR GLY ILE SER SEQRES 31 B 434 MET ALA ASN ASN TYR ASN ALA ARG GLY ARG PRO ARG MET SEQRES 32 B 434 VAL LEU THR SER LYS LYS GLY VAL PHE LEU ILE ARG GLU SEQRES 33 B 434 ARG GLU THR TYR ALA ASP LEU ILE ALA LYS ASP ILE VAL SEQRES 34 B 434 PRO PRO HIS LEU LEU MODRES 1TUF LLP A 83 LYS MODRES 1TUF LLP B 83 LYS HET LLP A 83 24 HET LLP B 83 24 HET AZ1 A 502 13 HET AZ1 B 503 13 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM AZ1 AZELAIC ACID HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 AZ1 2(C9 H16 O4) FORMUL 5 HOH *292(H2 O) HELIX 1 1 ALA A 35 GLY A 43 1 9 HELIX 2 2 GLU A 51 LYS A 66 1 16 HELIX 3 3 ARG A 67 THR A 72 1 6 HELIX 4 4 LLP A 83 ASN A 85 5 3 HELIX 5 5 ASN A 87 LEU A 97 1 11 HELIX 6 6 SER A 105 SER A 115 1 11 HELIX 7 7 PRO A 118 LYS A 120 5 3 HELIX 8 8 THR A 130 ALA A 140 1 11 HELIX 9 9 SER A 149 GLY A 164 1 16 HELIX 10 10 HIS A 182 ASN A 192 1 11 HELIX 11 11 GLY A 201 GLU A 212 1 12 HELIX 12 12 ASP A 231 GLU A 251 1 21 HELIX 13 13 THR A 277 LYS A 291 1 15 HELIX 14 14 GLY A 306 ALA A 311 1 6 HELIX 15 15 MET A 342 GLU A 348 1 7 HELIX 16 16 GLY A 402 ALA A 406 5 5 HELIX 17 17 THR A 433 ILE A 438 1 6 HELIX 18 18 PRO A 444 LEU A 448 5 5 HELIX 19 19 ALA B 35 GLY B 43 1 9 HELIX 20 20 GLU B 51 GLY B 73 1 23 HELIX 21 21 LLP B 83 ASN B 85 5 3 HELIX 22 22 ASN B 87 LEU B 97 1 11 HELIX 23 23 SER B 105 SER B 115 1 11 HELIX 24 24 PRO B 118 LYS B 120 5 3 HELIX 25 25 THR B 130 ALA B 140 1 11 HELIX 26 26 SER B 149 GLY B 164 1 16 HELIX 27 27 HIS B 182 ASN B 192 1 11 HELIX 28 28 GLY B 201 LEU B 211 1 11 HELIX 29 29 ILE B 232 GLU B 251 1 20 HELIX 30 30 THR B 277 LYS B 291 1 15 HELIX 31 31 GLY B 306 ALA B 311 1 6 HELIX 32 32 MET B 342 GLU B 348 1 7 HELIX 33 33 GLY B 402 ALA B 406 5 5 HELIX 34 34 THR B 433 ILE B 438 1 6 HELIX 35 35 PRO B 444 LEU B 448 5 5 SHEET 1 A 3 VAL A 21 ILE A 23 0 SHEET 2 A 3 PHE A 28 ILE A 30 -1 O PHE A 29 N GLU A 22 SHEET 3 A 3 TYR A 33 ASP A 34 -1 O TYR A 33 N ILE A 30 SHEET 1 B 6 ILE A 353 ASN A 355 0 SHEET 2 B 6 VAL A 392 ILE A 395 -1 O ALA A 394 N ILE A 354 SHEET 3 B 6 GLY A 314 GLU A 325 -1 N LEU A 316 O ILE A 395 SHEET 4 B 6 LYS A 330 ILE A 334 -1 O TRP A 331 N LYS A 324 SHEET 5 B 6 LYS A 362 ALA A 368 1 O SER A 366 N VAL A 332 SHEET 6 B 6 VAL A 377 ASP A 385 -1 O ARG A 382 N VAL A 365 SHEET 1 C 6 ILE A 353 ASN A 355 0 SHEET 2 C 6 VAL A 392 ILE A 395 -1 O ALA A 394 N ILE A 354 SHEET 3 C 6 GLY A 314 GLU A 325 -1 N LEU A 316 O ILE A 395 SHEET 4 C 6 LEU A 46 SER A 50 -1 N LEU A 46 O LEU A 317 SHEET 5 C 6 ARG A 416 SER A 421 1 O VAL A 418 N MET A 49 SHEET 6 C 6 GLY A 424 ARG A 429 -1 O PHE A 426 N LEU A 419 SHEET 1 D 9 VAL A 216 VAL A 218 0 SHEET 2 D 9 ALA A 167 PHE A 171 1 N ALA A 167 O ASN A 217 SHEET 3 D 9 ALA A 144 VAL A 147 1 O PHE A 145 N ALA A 170 SHEET 4 D 9 ILE A 122 PHE A 124 1 N PHE A 124 O ALA A 144 SHEET 5 D 9 GLY A 100 VAL A 103 1 N VAL A 103 O VAL A 123 SHEET 6 D 9 PHE A 76 ALA A 81 1 N TYR A 80 O ASP A 102 SHEET 7 D 9 ASN A 300 LEU A 303 1 O LEU A 303 N ALA A 79 SHEET 8 D 9 ASP A 258 ASN A 260 1 N VAL A 259 O ILE A 302 SHEET 9 D 9 GLY A 220 HIS A 222 1 N VAL A 221 O ASN A 260 SHEET 1 E 2 ILE A 173 ASN A 174 0 SHEET 2 E 2 LEU A 196 ASP A 197 1 O LEU A 196 N ASN A 174 SHEET 1 F 3 VAL B 21 ILE B 23 0 SHEET 2 F 3 PHE B 28 ILE B 30 -1 O PHE B 29 N GLU B 22 SHEET 3 F 3 TYR B 33 ASP B 34 -1 O TYR B 33 N ILE B 30 SHEET 1 G 6 ILE B 353 ASN B 355 0 SHEET 2 G 6 VAL B 392 ILE B 395 -1 O ALA B 394 N ILE B 354 SHEET 3 G 6 GLY B 314 GLU B 325 -1 N GLY B 318 O LEU B 393 SHEET 4 G 6 LYS B 330 ILE B 334 -1 O MET B 333 N HIS B 322 SHEET 5 G 6 LYS B 362 ALA B 368 1 O ALA B 368 N VAL B 332 SHEET 6 G 6 VAL B 377 ASP B 385 -1 O ARG B 382 N VAL B 365 SHEET 1 H 6 ILE B 353 ASN B 355 0 SHEET 2 H 6 VAL B 392 ILE B 395 -1 O ALA B 394 N ILE B 354 SHEET 3 H 6 GLY B 314 GLU B 325 -1 N GLY B 318 O LEU B 393 SHEET 4 H 6 LEU B 46 SER B 50 -1 N LEU B 46 O LEU B 317 SHEET 5 H 6 ARG B 416 SER B 421 1 O VAL B 418 N MET B 49 SHEET 6 H 6 GLY B 424 ARG B 429 -1 O PHE B 426 N LEU B 419 SHEET 1 I10 LEU B 196 ASP B 197 0 SHEET 2 I10 ALA B 167 ASN B 174 1 N ARG B 172 O LEU B 196 SHEET 3 I10 VAL B 216 HIS B 222 1 O VAL B 219 N VAL B 169 SHEET 4 I10 ASP B 258 ASN B 260 1 O ASP B 258 N VAL B 219 SHEET 5 I10 ASN B 300 LEU B 303 1 O ILE B 302 N VAL B 259 SHEET 6 I10 PHE B 76 ALA B 81 1 N ALA B 79 O LEU B 303 SHEET 7 I10 GLY B 100 VAL B 103 1 O ASP B 102 N TYR B 80 SHEET 8 I10 ILE B 122 PHE B 124 1 O VAL B 123 N ALA B 101 SHEET 9 I10 ALA B 144 VAL B 147 1 O ASN B 146 N PHE B 124 SHEET 10 I10 ALA B 167 ASN B 174 1 O ALA B 170 N PHE B 145 LINK C TYR A 82 N LLP A 83 1555 1555 1.33 LINK C LLP A 83 N ALA A 84 1555 1555 1.33 LINK C TYR B 82 N LLP B 83 1555 1555 1.32 LINK C LLP B 83 N ALA B 84 1555 1555 1.33 CISPEP 1 THR A 44 PRO A 45 0 0.16 CISPEP 2 THR B 44 PRO B 45 0 -0.55 SITE 1 AC1 11 LLP A 83 HIS A 224 GLY A 226 SER A 227 SITE 2 AC1 11 ARG A 307 ARG A 343 TYR A 347 HOH A 532 SITE 3 AC1 11 GLU B 373 SER B 374 TYR B 409 SITE 1 AC2 6 CYS A 372 GLU A 373 SER B 227 ARG B 307 SITE 2 AC2 6 ARG B 343 TYR B 347 CRYST1 80.806 80.806 508.503 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012375 0.007145 0.000000 0.00000 SCALE2 0.000000 0.014290 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001967 0.00000