HEADER ANTITUMOR PROTEIN/DNA 11-JUL-95 1TUP TITLE TUMOR SUPPRESSOR P53 COMPLEXED WITH DNA CAVEAT 1TUP INCORRECT CHIRAL CENTER(S) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*TP*TP*TP*CP*CP*TP*AP*GP*AP*CP*TP*TP*GP*CP*CP*CP*A P*AP*TP*TP*A)- COMPND 4 3'); COMPND 5 CHAIN: E; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*AP*TP*AP*AP*TP*TP*GP*GP*GP*CP*AP*AP*GP*TP*CP*TP*A P*GP*GP*AP*A)- COMPND 10 3'); COMPND 11 CHAIN: F; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: PROTEIN (P53 TUMOR SUPPRESSOR ); COMPND 15 CHAIN: A, B, C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 CELL_LINE: A431; SOURCE 10 CELL: HUMAN VULVA CARCINOMA; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET3D KEYWDS ANTIGEN P53, ANTITUMOR PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.CHO,S.GORINA,P.D.JEFFREY,N.P.PAVLETICH REVDAT 3 14-FEB-24 1TUP 1 REMARK LINK REVDAT 2 24-FEB-09 1TUP 1 VERSN REVDAT 1 11-JUL-95 1TUP 0 JRNL AUTH Y.CHO,S.GORINA,P.D.JEFFREY,N.P.PAVLETICH JRNL TITL CRYSTAL STRUCTURE OF A P53 TUMOR SUPPRESSOR-DNA COMPLEX: JRNL TITL 2 UNDERSTANDING TUMORIGENIC MUTATIONS. JRNL REF SCIENCE V. 265 346 1994 JRNL REFN ISSN 0036-8075 JRNL PMID 8023157 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.P.PAVLETICH,K.A.CHAMBERS,C.O.PABO REMARK 1 TITL THE DNA-BINDING DOMAIN OF P53 CONTAINS THE FOUR CONSERVED REMARK 1 TITL 2 REGIONS AND THE MAJOR MUTATION HOT SPOTS REMARK 1 REF GENES DEV. V. 7 2556 1993 REMARK 1 REFN ISSN 0890-9369 REMARK 1 REFERENCE 2 REMARK 1 AUTH B.VOGELSTEIN,K.W.KINZLER REMARK 1 TITL P53 FUNCTION AND DYSFUNCTION REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 70 523 1992 REMARK 1 REFN ISSN 0092-8674 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 34275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4586 REMARK 3 NUCLEIC ACID ATOMS : 855 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 384 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 2.460 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000176862. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 3.360 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.75000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.75000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 290 REMARK 465 LYS A 291 REMARK 465 LYS A 292 REMARK 465 GLY A 293 REMARK 465 GLU A 294 REMARK 465 PRO A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 GLU A 298 REMARK 465 LEU A 299 REMARK 465 PRO A 300 REMARK 465 PRO A 301 REMARK 465 GLY A 302 REMARK 465 SER A 303 REMARK 465 THR A 304 REMARK 465 LYS A 305 REMARK 465 ARG A 306 REMARK 465 ALA A 307 REMARK 465 LEU A 308 REMARK 465 PRO A 309 REMARK 465 ASN A 310 REMARK 465 ASN A 311 REMARK 465 THR A 312 REMARK 465 SER B 94 REMARK 465 SER B 95 REMARK 465 ARG B 290 REMARK 465 LYS B 291 REMARK 465 LYS B 292 REMARK 465 GLY B 293 REMARK 465 GLU B 294 REMARK 465 PRO B 295 REMARK 465 HIS B 296 REMARK 465 HIS B 297 REMARK 465 GLU B 298 REMARK 465 LEU B 299 REMARK 465 PRO B 300 REMARK 465 PRO B 301 REMARK 465 GLY B 302 REMARK 465 SER B 303 REMARK 465 THR B 304 REMARK 465 LYS B 305 REMARK 465 ARG B 306 REMARK 465 ALA B 307 REMARK 465 LEU B 308 REMARK 465 PRO B 309 REMARK 465 ASN B 310 REMARK 465 ASN B 311 REMARK 465 THR B 312 REMARK 465 SER C 94 REMARK 465 ARG C 290 REMARK 465 LYS C 291 REMARK 465 LYS C 292 REMARK 465 GLY C 293 REMARK 465 GLU C 294 REMARK 465 PRO C 295 REMARK 465 HIS C 296 REMARK 465 HIS C 297 REMARK 465 GLU C 298 REMARK 465 LEU C 299 REMARK 465 PRO C 300 REMARK 465 PRO C 301 REMARK 465 GLY C 302 REMARK 465 SER C 303 REMARK 465 THR C 304 REMARK 465 LYS C 305 REMARK 465 ARG C 306 REMARK 465 ALA C 307 REMARK 465 LEU C 308 REMARK 465 PRO C 309 REMARK 465 ASN C 310 REMARK 465 ASN C 311 REMARK 465 THR C 312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 96 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR C 140 OE2 GLU C 198 2.06 REMARK 500 NH1 ARG B 273 OD2 ASP B 281 2.06 REMARK 500 O GLU C 224 N SER C 227 2.11 REMARK 500 OE1 GLN A 192 O HOH A 2196 2.13 REMARK 500 O ASP C 186 N LEU C 188 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 2313 O HOH C 2313 2657 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC F1110 O3' DC F1110 C3' -0.057 REMARK 500 GLU A 180 CD GLU A 180 OE1 0.066 REMARK 500 GLU A 224 CD GLU A 224 OE2 0.067 REMARK 500 GLU A 271 CD GLU A 271 OE1 0.070 REMARK 500 GLU B 287 CD GLU B 287 OE2 0.066 REMARK 500 GLU C 204 CD GLU C 204 OE2 0.069 REMARK 500 GLU C 287 CD GLU C 287 OE2 0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT E1001 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT E1002 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT E1003 O4' - C4' - C3' ANGL. DEV. = -4.0 DEGREES REMARK 500 DT E1003 O4' - C1' - N1 ANGL. DEV. = 9.1 DEGREES REMARK 500 DT E1003 C3' - O3' - P ANGL. DEV. = 11.0 DEGREES REMARK 500 DC E1005 C3' - O3' - P ANGL. DEV. = 9.3 DEGREES REMARK 500 DA E1009 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC E1010 C3' - O3' - P ANGL. DEV. = -9.3 DEGREES REMARK 500 DT E1012 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT E1012 C3' - O3' - P ANGL. DEV. = 8.8 DEGREES REMARK 500 DC E1014 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC E1015 C3' - O3' - P ANGL. DEV. = 13.1 DEGREES REMARK 500 DA E1017 C3' - O3' - P ANGL. DEV. = 9.2 DEGREES REMARK 500 DA E1018 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT E1019 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA F1101 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT F1102 O4' - C4' - C3' ANGL. DEV. = -3.7 DEGREES REMARK 500 DT F1102 C1' - O4' - C4' ANGL. DEV. = -6.7 DEGREES REMARK 500 DT F1102 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DG F1107 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG F1107 C3' - O3' - P ANGL. DEV. = 11.9 DEGREES REMARK 500 DG F1109 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC F1110 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA F1112 C3' - O3' - P ANGL. DEV. = -8.6 DEGREES REMARK 500 DG F1113 C1' - O4' - C4' ANGL. DEV. = -6.6 DEGREES REMARK 500 DG F1113 C3' - O3' - P ANGL. DEV. = 8.4 DEGREES REMARK 500 DT F1114 P - O5' - C5' ANGL. DEV. = -12.1 DEGREES REMARK 500 DC F1115 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT F1116 C3' - O3' - P ANGL. DEV. = 11.5 DEGREES REMARK 500 DA F1117 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG F1118 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 DG F1118 C3' - O3' - P ANGL. DEV. = 11.8 DEGREES REMARK 500 DG F1119 C5' - C4' - O4' ANGL. DEV. = 7.2 DEGREES REMARK 500 DG F1119 C1' - O4' - C4' ANGL. DEV. = -8.3 DEGREES REMARK 500 DG F1119 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG F1119 O4' - C1' - C2' ANGL. DEV. = -5.5 DEGREES REMARK 500 DG F1119 O4' - C1' - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 DG F1119 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DA F1121 O4' - C1' - N9 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 148 CB - CG - OD1 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG A 158 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 158 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ASP A 184 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP A 207 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 213 CG - CD - NE ANGL. DEV. = -13.1 DEGREES REMARK 500 ARG A 213 CD - NE - CZ ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG A 213 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 213 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 267 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 273 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 85 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 184 21.49 -140.95 REMARK 500 PHE A 212 -5.49 68.45 REMARK 500 GLU A 224 104.27 -50.05 REMARK 500 VAL A 225 128.52 -17.78 REMARK 500 CYS A 242 106.87 -59.86 REMARK 500 SER B 106 -8.93 -41.95 REMARK 500 SER B 121 23.13 89.11 REMARK 500 ALA B 138 -7.28 71.16 REMARK 500 PRO B 152 -177.05 -67.85 REMARK 500 LEU B 188 -49.65 -133.43 REMARK 500 LEU B 201 1.79 -52.23 REMARK 500 PHE B 212 -16.35 67.67 REMARK 500 ARG B 213 132.17 -37.41 REMARK 500 ASN B 247 28.00 44.56 REMARK 500 ARG B 248 5.95 87.68 REMARK 500 CYS B 277 51.60 72.47 REMARK 500 VAL C 97 89.89 -150.54 REMARK 500 THR C 118 35.81 -86.37 REMARK 500 LEU C 137 126.36 -39.51 REMARK 500 ALA C 138 -7.82 73.18 REMARK 500 HIS C 178 -71.45 -53.42 REMARK 500 ARG C 181 43.05 -96.34 REMARK 500 CYS C 182 -53.14 -171.50 REMARK 500 ASP C 186 70.56 73.48 REMARK 500 ASP C 207 102.48 -165.79 REMARK 500 THR C 211 -10.46 -142.00 REMARK 500 VAL C 225 -59.12 8.65 REMARK 500 CYS C 242 99.40 -38.62 REMARK 500 CYS C 275 -153.53 -143.80 REMARK 500 CYS C 277 70.94 68.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 951 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 176 SG REMARK 620 2 HIS A 179 ND1 107.5 REMARK 620 3 CYS A 238 SG 110.5 114.4 REMARK 620 4 CYS A 242 SG 106.6 101.0 116.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 952 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 176 SG REMARK 620 2 HIS B 179 ND1 102.5 REMARK 620 3 CYS B 238 SG 113.2 108.8 REMARK 620 4 CYS B 242 SG 107.2 109.0 115.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 953 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 176 SG REMARK 620 2 HIS C 179 ND1 101.6 REMARK 620 3 CYS C 238 SG 109.5 109.7 REMARK 620 4 CYS C 242 SG 115.9 98.6 119.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 951 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 952 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 953 DBREF 1TUP A 94 312 UNP P04637 P53_HUMAN 94 312 DBREF 1TUP B 94 312 UNP P04637 P53_HUMAN 94 312 DBREF 1TUP C 94 312 UNP P04637 P53_HUMAN 94 312 DBREF 1TUP E 1001 1021 PDB 1TUP 1TUP 1001 1021 DBREF 1TUP F 1101 1121 PDB 1TUP 1TUP 1101 1121 SEQRES 1 E 21 DT DT DT DC DC DT DA DG DA DC DT DT DG SEQRES 2 E 21 DC DC DC DA DA DT DT DA SEQRES 1 F 21 DA DT DA DA DT DT DG DG DG DC DA DA DG SEQRES 2 F 21 DT DC DT DA DG DG DA DA SEQRES 1 A 219 SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER SEQRES 2 A 219 TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA SEQRES 3 A 219 LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS SEQRES 4 A 219 MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU SEQRES 5 A 219 TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG SEQRES 6 A 219 ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU SEQRES 7 A 219 VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SEQRES 8 A 219 SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL SEQRES 9 A 219 GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN SEQRES 10 A 219 THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO SEQRES 11 A 219 GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR SEQRES 12 A 219 MET CYS ASN SER SER CYS MET GLY GLY MET ASN ARG ARG SEQRES 13 A 219 PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY SEQRES 14 A 219 ASN LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL CYS SEQRES 15 A 219 ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN SEQRES 16 A 219 LEU ARG LYS LYS GLY GLU PRO HIS HIS GLU LEU PRO PRO SEQRES 17 A 219 GLY SER THR LYS ARG ALA LEU PRO ASN ASN THR SEQRES 1 B 219 SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER SEQRES 2 B 219 TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA SEQRES 3 B 219 LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS SEQRES 4 B 219 MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU SEQRES 5 B 219 TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG SEQRES 6 B 219 ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU SEQRES 7 B 219 VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SEQRES 8 B 219 SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL SEQRES 9 B 219 GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN SEQRES 10 B 219 THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO SEQRES 11 B 219 GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR SEQRES 12 B 219 MET CYS ASN SER SER CYS MET GLY GLY MET ASN ARG ARG SEQRES 13 B 219 PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY SEQRES 14 B 219 ASN LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL CYS SEQRES 15 B 219 ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN SEQRES 16 B 219 LEU ARG LYS LYS GLY GLU PRO HIS HIS GLU LEU PRO PRO SEQRES 17 B 219 GLY SER THR LYS ARG ALA LEU PRO ASN ASN THR SEQRES 1 C 219 SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER SEQRES 2 C 219 TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA SEQRES 3 C 219 LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS SEQRES 4 C 219 MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU SEQRES 5 C 219 TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG SEQRES 6 C 219 ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU SEQRES 7 C 219 VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SEQRES 8 C 219 SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL SEQRES 9 C 219 GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN SEQRES 10 C 219 THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO SEQRES 11 C 219 GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR SEQRES 12 C 219 MET CYS ASN SER SER CYS MET GLY GLY MET ASN ARG ARG SEQRES 13 C 219 PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY SEQRES 14 C 219 ASN LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL CYS SEQRES 15 C 219 ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN SEQRES 16 C 219 LEU ARG LYS LYS GLY GLU PRO HIS HIS GLU LEU PRO PRO SEQRES 17 C 219 GLY SER THR LYS ARG ALA LEU PRO ASN ASN THR HET ZN A 951 1 HET ZN B 952 1 HET ZN C 953 1 HETNAM ZN ZINC ION FORMUL 6 ZN 3(ZN 2+) FORMUL 9 HOH *384(H2 O) HELIX 1 1 SER A 166 HIS A 168 5 3 HELIX 2 2 PRO A 177 GLU A 180 1 4 HELIX 3 3 PRO A 278 GLU A 287 1 10 HELIX 4 4 GLN B 167 THR B 170 5 4 HELIX 5 5 PRO B 177 ARG B 181 1 5 HELIX 6 6 PRO B 278 GLU B 287 1 10 HELIX 7 7 GLY C 105 TYR C 107 5 3 HELIX 8 8 SER C 166 MET C 169 1 4 HELIX 9 9 PRO C 177 ARG C 181 1 5 HELIX 10 10 PRO C 278 GLU C 285 1 8 SHEET 1 A 4 ARG A 110 GLY A 112 0 SHEET 2 A 4 CYS A 141 TRP A 146 -1 N TRP A 146 O ARG A 110 SHEET 3 A 4 THR A 230 TYR A 236 -1 N TYR A 234 O CYS A 141 SHEET 4 A 4 ILE A 195 GLU A 198 -1 N GLU A 198 O HIS A 233 SHEET 1 B 7 CYS A 124 SER A 127 0 SHEET 2 B 7 LYS A 132 CYS A 135 -1 N PHE A 134 O THR A 125 SHEET 3 B 7 LEU A 264 VAL A 274 1 N GLU A 271 O MET A 133 SHEET 4 B 7 ILE A 251 GLU A 258 -1 N LEU A 257 O LEU A 265 SHEET 5 B 7 ARG A 156 TYR A 163 -1 N ILE A 162 O LEU A 252 SHEET 6 B 7 HIS A 214 PRO A 219 -1 N VAL A 218 O VAL A 157 SHEET 7 B 7 GLU A 204 ASP A 207 -1 N LEU A 206 O SER A 215 SHEET 1 C 4 ARG B 110 GLY B 112 0 SHEET 2 C 4 CYS B 141 TRP B 146 -1 N TRP B 146 O ARG B 110 SHEET 3 C 4 THR B 230 TYR B 236 -1 N TYR B 234 O CYS B 141 SHEET 4 C 4 ILE B 195 VAL B 197 -1 N ARG B 196 O ASN B 235 SHEET 1 D 7 CYS B 124 SER B 127 0 SHEET 2 D 7 LYS B 132 CYS B 135 -1 N PHE B 134 O THR B 125 SHEET 3 D 7 LEU B 264 VAL B 274 1 N GLU B 271 O MET B 133 SHEET 4 D 7 ILE B 251 GLU B 258 -1 N LEU B 257 O LEU B 265 SHEET 5 D 7 ARG B 156 TYR B 163 -1 N ILE B 162 O LEU B 252 SHEET 6 D 7 HIS B 214 PRO B 219 -1 N VAL B 218 O VAL B 157 SHEET 7 D 7 GLU B 204 ASP B 207 -1 N LEU B 206 O SER B 215 SHEET 1 E 4 ARG C 110 PHE C 113 0 SHEET 2 E 4 CYS C 141 TRP C 146 -1 N TRP C 146 O ARG C 110 SHEET 3 E 4 THR C 230 TYR C 236 -1 N TYR C 234 O CYS C 141 SHEET 4 E 4 ILE C 195 VAL C 197 -1 N ARG C 196 O ASN C 235 SHEET 1 F 7 THR C 125 SER C 127 0 SHEET 2 F 7 LYS C 132 GLN C 136 -1 N PHE C 134 O THR C 125 SHEET 3 F 7 LEU C 264 CYS C 275 1 N GLU C 271 O MET C 133 SHEET 4 F 7 ILE C 251 GLU C 258 -1 N LEU C 257 O LEU C 265 SHEET 5 F 7 ARG C 156 TYR C 163 -1 N ILE C 162 O LEU C 252 SHEET 6 F 7 HIS C 214 PRO C 219 -1 N VAL C 218 O VAL C 157 SHEET 7 F 7 GLU C 204 ASP C 207 -1 N LEU C 206 O SER C 215 LINK SG CYS A 176 ZN ZN A 951 1555 1555 2.33 LINK ND1 HIS A 179 ZN ZN A 951 1555 1555 1.99 LINK SG CYS A 238 ZN ZN A 951 1555 1555 2.28 LINK SG CYS A 242 ZN ZN A 951 1555 1555 2.23 LINK SG CYS B 176 ZN ZN B 952 1555 1555 2.33 LINK ND1 HIS B 179 ZN ZN B 952 1555 1555 2.06 LINK SG CYS B 238 ZN ZN B 952 1555 1555 2.21 LINK SG CYS B 242 ZN ZN B 952 1555 1555 2.24 LINK SG CYS C 176 ZN ZN C 953 1555 1555 2.38 LINK ND1 HIS C 179 ZN ZN C 953 1555 1555 2.10 LINK SG CYS C 238 ZN ZN C 953 1555 1555 2.32 LINK SG CYS C 242 ZN ZN C 953 1555 1555 2.13 SITE 1 AC1 4 CYS A 176 HIS A 179 CYS A 238 CYS A 242 SITE 1 AC2 4 CYS B 176 HIS B 179 CYS B 238 CYS B 242 SITE 1 AC3 4 CYS C 176 HIS C 179 CYS C 238 CYS C 242 CRYST1 117.500 67.900 108.800 90.00 105.50 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008511 0.000000 0.002360 0.00000 SCALE2 0.000000 0.014728 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009538 0.00000 MTRIX1 1 0.503550 -0.632580 0.588460 -5.36760 1 MTRIX2 1 -0.056160 0.655700 0.752930 -42.32570 1 MTRIX3 1 -0.862140 -0.412180 0.294650 94.00970 1 MTRIX1 2 0.340990 -0.649700 0.679420 -3.29230 1 MTRIX2 2 -0.179270 0.664530 0.725440 -24.99100 1 MTRIX3 2 -0.922810 -0.369170 0.110130 80.31130 1 MTRIX1 3 0.977300 -0.050020 0.205870 11.96133 1 MTRIX2 3 0.051010 0.998700 0.000510 15.54692 1 MTRIX3 3 -0.205630 0.010000 0.978580 10.20402 1