HEADER HYDROLASE 01-JUL-04 1TWL TITLE INORGANIC PYROPHOSPHATASE FROM PYROCOCCUS FURIOSUS PFU-264096-001 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INORGANIC PYROPHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PYROPHOSPHATE PHOSPHO-HYDROLASE, PPASE; COMPND 5 EC: 3.6.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 GENE: PPA, PF0257; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INORGANIC PYROPHOSPHATASE, STRUCTURAL GENOMICS, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, PSI, SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS, KEYWDS 3 SECSG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHOU,W.TEMPEL,Z.-J.LIU,L.CHEN,L.-L.CLANCY KELLEY,B.D.DILLARD, AUTHOR 2 R.C.HOPKINS,W.B.ARENDALL III,J.P.ROSE,J.C.ENEH,R.C.HOPKINS, AUTHOR 3 F.E.JENNEY JR.,H.S.LEE,T.LI,F.L.POOLE II,C.SHAH,F.J.SUGAR, AUTHOR 4 M.W.W.ADAMS,J.S.RICHARDSON,D.C.RICHARDSON,B.-C.WANG,SOUTHEAST AUTHOR 5 COLLABORATORY FOR STRUCTURAL GENOMICS (SECSG) REVDAT 7 23-AUG-23 1TWL 1 SEQADV REVDAT 6 11-OCT-17 1TWL 1 REMARK REVDAT 5 13-JUL-11 1TWL 1 VERSN REVDAT 4 24-FEB-09 1TWL 1 VERSN REVDAT 3 15-FEB-05 1TWL 1 REMARK REVDAT 2 01-FEB-05 1TWL 1 REMARK REVDAT 1 23-NOV-04 1TWL 0 JRNL AUTH W.ZHOU,W.TEMPEL,Z.-J.LIU,L.CHEN,L.-L.CLANCY KELLEY, JRNL AUTH 2 B.D.DILLARD,R.C.HOPKINS,W.B.ARENDALL III,J.P.ROSE,J.C.ENEH, JRNL AUTH 3 R.C.HOPKINS,F.E.JENNEY JR.,H.S.LEE,T.LI,F.L.POOLE II,C.SHAH, JRNL AUTH 4 F.J.SUGAR,M.W.W.ADAMS,J.S.RICHARDSON,D.C.RICHARDSON, JRNL AUTH 5 B.-C.WANG,SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS JRNL TITL INORGANIC PYROPHOSPHATASE FROM PYROCOCCUS FURIOSUS JRNL TITL 2 PFU-264096-001 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 9313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 447 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 650 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1370 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 35 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02400 REMARK 3 B22 (A**2) : -0.02400 REMARK 3 B33 (A**2) : 0.03600 REMARK 3 B12 (A**2) : -0.01200 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.286 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.230 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.223 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1417 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1298 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1928 ; 1.311 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3001 ; 0.795 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 170 ; 6.324 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 62 ;37.515 ;23.226 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 225 ;13.961 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;19.230 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 205 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1557 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 300 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 216 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1233 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 677 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 793 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 42 ; 0.130 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.184 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 75 ; 0.240 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.149 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 892 ; 2.368 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 340 ; 0.575 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1394 ; 3.435 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1172 ; 1.980 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 624 ; 2.142 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1230 ; 0.735 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 534 ; 3.157 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1829 ; 1.432 ; 3.000 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1TWL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000022974. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9314 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.38100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1UDE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M K2HPO4, 0.1M TRIS-HCL, PH 8.6, REMARK 280 MODIFIED MICROBATCH, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 56.71700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.74558 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 24.43767 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 56.71700 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 32.74558 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 24.43767 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 56.71700 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 32.74558 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 24.43767 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 56.71700 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 32.74558 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 24.43767 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 56.71700 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 32.74558 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 24.43767 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 56.71700 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 32.74558 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 24.43767 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 65.49115 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 48.87533 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 65.49115 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 48.87533 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 65.49115 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 48.87533 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 65.49115 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 48.87533 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 65.49115 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 48.87533 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 65.49115 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 48.87533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN. THE BIOLOGICAL UNIT IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 113.43400 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 56.71700 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 98.23673 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 56.71700 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -32.74558 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -24.43767 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 65.49115 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -24.43767 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 113.43400 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 65.49115 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -24.43767 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 208 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 213 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 ASP A 66 REMARK 465 GLY A 175 REMARK 465 LYS A 176 REMARK 465 LYS A 177 REMARK 465 GLU A 178 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 2 CG OD1 ND2 REMARK 470 GLU A 8 CB CG CD OE1 OE2 REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 GLU A 65 CG CD OE1 OE2 REMARK 470 ASP A 67 CG OD1 OD2 REMARK 470 ASP A 98 CG OD1 OD2 REMARK 470 LYS A 117 CG CD CE NZ REMARK 470 ASP A 118 CG OD1 OD2 REMARK 470 LYS A 138 CD CE NZ REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 ILE A 148 CG1 CG2 CD1 REMARK 470 ILE A 149 CG1 CG2 CD1 REMARK 470 GLU A 157 CD OE1 OE2 REMARK 470 GLU A 172 CG CD OE1 OE2 REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 PHE A 174 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 34 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 55 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 68 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 121 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 124 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 12 57.08 -158.56 REMARK 500 LEU A 83 14.86 81.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PFU-264096-001 RELATED DB: TARGETDB DBREF 1TWL A 2 178 UNP Q8U438 IPYR_PYRFU 2 178 SEQADV 1TWL ALA A -7 UNP Q8U438 EXPRESSION TAG SEQADV 1TWL HIS A -6 UNP Q8U438 EXPRESSION TAG SEQADV 1TWL HIS A -5 UNP Q8U438 EXPRESSION TAG SEQADV 1TWL HIS A -4 UNP Q8U438 EXPRESSION TAG SEQADV 1TWL HIS A -3 UNP Q8U438 EXPRESSION TAG SEQADV 1TWL HIS A -2 UNP Q8U438 EXPRESSION TAG SEQADV 1TWL HIS A -1 UNP Q8U438 EXPRESSION TAG SEQADV 1TWL GLY A 0 UNP Q8U438 EXPRESSION TAG SEQADV 1TWL SER A 1 UNP Q8U438 EXPRESSION TAG SEQRES 1 A 186 ALA HIS HIS HIS HIS HIS HIS GLY SER ASN PRO PHE HIS SEQRES 2 A 186 ASP LEU GLU PRO GLY PRO ASP VAL PRO GLU VAL VAL TYR SEQRES 3 A 186 ALA ILE ILE GLU ILE PRO LYS GLY SER ARG ASN LYS TYR SEQRES 4 A 186 GLU LEU ASP LYS LYS THR GLY LEU LEU LYS LEU ASP ARG SEQRES 5 A 186 VAL LEU TYR SER PRO PHE PHE TYR PRO VAL ASP TYR GLY SEQRES 6 A 186 ILE ILE PRO ARG THR TRP TYR GLU ASP ASP ASP PRO PHE SEQRES 7 A 186 ASP ILE MET VAL ILE MET ARG GLU PRO VAL TYR PRO LEU SEQRES 8 A 186 THR ILE ILE GLU ALA ARG PRO ILE GLY LEU PHE LYS MET SEQRES 9 A 186 ILE ASP SER GLY ASP LYS ASP TYR LYS VAL LEU ALA VAL SEQRES 10 A 186 PRO VAL GLU ASP PRO TYR PHE LYS ASP TRP LYS ASP ILE SEQRES 11 A 186 ASP ASP VAL PRO LYS ALA PHE LEU ASP GLU ILE ALA HIS SEQRES 12 A 186 PHE PHE LYS ARG TYR LYS GLU LEU GLN GLY LYS GLU ILE SEQRES 13 A 186 ILE VAL GLU GLY TRP GLU GLY ALA GLU ALA ALA LYS ARG SEQRES 14 A 186 GLU ILE LEU ARG ALA ILE GLU MET TYR LYS GLU LYS PHE SEQRES 15 A 186 GLY LYS LYS GLU FORMUL 2 HOH *35(H2 O) HELIX 1 1 ASN A 2 LEU A 7 1 6 HELIX 2 2 ASP A 113 LYS A 117 5 5 HELIX 3 3 ASP A 121 VAL A 125 5 5 HELIX 4 4 PRO A 126 TYR A 140 1 15 HELIX 5 5 LYS A 141 GLY A 145 5 5 HELIX 6 6 ALA A 156 PHE A 174 1 19 SHEET 1 A 8 ASP A 101 LYS A 102 0 SHEET 2 A 8 ILE A 148 GLY A 155 0 SHEET 3 A 8 VAL A 17 ILE A 23 0 SHEET 4 A 8 ASP A 55 ILE A 58 -1 O ILE A 58 N ILE A 20 SHEET 5 A 8 ASP A 71 VAL A 74 -1 O VAL A 74 N ASP A 55 SHEET 6 A 8 LYS A 105 PRO A 110 1 O VAL A 106 N MET A 73 SHEET 7 A 8 ILE A 85 ASP A 98 -1 N ARG A 89 O VAL A 109 SHEET 8 A 8 ILE A 148 GLY A 155 -1 O ILE A 149 N ILE A 97 SHEET 1 B 2 ASN A 29 LEU A 33 0 SHEET 2 B 2 LEU A 40 VAL A 45 -1 O ARG A 44 N LYS A 30 CISPEP 1 VAL A 13 PRO A 14 0 -1.04 CRYST1 113.434 113.434 73.313 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008800 0.005100 0.000000 0.00000 SCALE2 0.000000 0.010200 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013600 0.00000