HEADER HYDROLASE 05-JUL-04 1TXO TITLE CRYSTAL STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS SERINE/THREONINE TITLE 2 PHOSPHATASE PSTP/PPP AT 1.95 A. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE BACTERIAL ENZYME; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SERINE/THREONINE PROTEIN PHOSPHATASES, PSTP/PPP; COMPND 5 EC: 3.1.3.16; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24B KEYWDS PUTATIVE BACTERIAL ENZYME, SERINE/THREONINE PROTEIN PHOSPHATASES, KEYWDS 2 PSTP/PPP, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, TB KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, TBSGC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.E.PULLEN,H.L.NG,P.Y.SUNG,M.C.GOOD,S.M.SMITH,T.ALBER,TB STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (TBSGC) REVDAT 8 30-OCT-24 1TXO 1 REMARK SEQADV LINK REVDAT 7 11-OCT-17 1TXO 1 REMARK REVDAT 6 21-SEP-16 1TXO 1 REMARK REVDAT 5 10-SEP-14 1TXO 1 JRNL VERSN REVDAT 4 24-FEB-09 1TXO 1 VERSN REVDAT 3 01-FEB-05 1TXO 1 AUTHOR KEYWDS REMARK REVDAT 2 30-NOV-04 1TXO 1 COMPND REVDAT 1 23-NOV-04 1TXO 0 JRNL AUTH K.E.PULLEN,H.L.NG,P.Y.SUNG,M.C.GOOD,S.M.SMITH,T.ALBER JRNL TITL AN ALTERNATE CONFORMATION AND A THIRD METAL IN PSTP/PPP, THE JRNL TITL 2 M. TUBERCULOSIS PP2C-FAMILY SER/THR PROTEIN PHOSPHATASE. JRNL REF STRUCTURE V. 12 1947 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15530359 JRNL DOI 10.1016/J.STR.2004.09.008 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 38658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2042 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2507 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3454 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 241 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45000 REMARK 3 B22 (A**2) : 1.50000 REMARK 3 B33 (A**2) : -1.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.157 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.631 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3496 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3308 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4750 ; 1.076 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7608 ; 0.729 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 469 ; 5.921 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 571 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3999 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 665 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 633 ; 0.181 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3722 ; 0.231 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2126 ; 0.079 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 166 ; 0.122 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.188 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 52 ; 0.245 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.126 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2322 ; 0.626 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3682 ; 1.184 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1174 ; 1.596 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1068 ; 2.793 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1TXO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023008. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12714, 0.97960, 0.95373, REMARK 200 1.8926 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, ELVES REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38658 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 72.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.35200 REMARK 200 R SYM FOR SHELL (I) : 0.41500 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 10,000, SODIUM CACODYLATE, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.37850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 4 REMARK 465 THR A 5 REMARK 465 MSE B 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 72 CE NZ REMARK 470 GLU A 128 CD OE1 OE2 REMARK 470 GLU A 172 CG CD OE1 OE2 REMARK 470 GLU A 200 CG CD OE1 OE2 REMARK 470 GLU A 213 CD OE1 OE2 REMARK 470 ARG B 9 CD NE CZ NH1 NH2 REMARK 470 ARG B 32 NE CZ NH1 NH2 REMARK 470 GLU B 64 CD OE1 OE2 REMARK 470 GLU B 128 OE2 REMARK 470 GLU B 145 OE2 REMARK 470 GLU B 151 CB CG CD OE1 OE2 REMARK 470 SER B 155 OG REMARK 470 GLU B 179 CG CD OE1 OE2 REMARK 470 GLU B 204 CD OE1 OE2 REMARK 470 GLU B 213 CG CD OE1 OE2 REMARK 470 GLU B 220 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 136 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 68 76.23 -103.06 REMARK 500 PRO B 65 1.66 -69.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 700 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 38 OD2 REMARK 620 2 ASP A 191 OD1 84.7 REMARK 620 3 ASP A 229 OD2 167.1 88.5 REMARK 620 4 HOH A 705 O 83.6 94.4 86.0 REMARK 620 5 HOH A 726 O 93.5 85.7 96.9 177.1 REMARK 620 6 HOH A 831 O 105.3 164.0 83.8 99.1 81.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 701 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 38 OD1 REMARK 620 2 GLY A 39 O 94.6 REMARK 620 3 HOH A 715 O 176.1 81.9 REMARK 620 4 HOH A 723 O 84.7 91.7 97.0 REMARK 620 5 HOH A 724 O 87.1 103.7 92.1 163.1 REMARK 620 6 HOH A 831 O 91.6 166.7 92.1 77.2 88.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 702 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD2 REMARK 620 2 SER A 160 O 94.3 REMARK 620 3 SER A 160 OG 161.4 81.4 REMARK 620 4 ASP A 191 OD2 98.0 161.3 91.0 REMARK 620 5 HOH A 707 O 84.4 96.0 78.1 99.1 REMARK 620 6 HOH A 832 O 85.2 80.4 111.7 86.6 168.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 703 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 38 OD1 REMARK 620 2 GLY B 39 O 91.7 REMARK 620 3 HOH B 718 O 83.4 104.2 REMARK 620 4 HOH B 725 O 87.7 91.9 161.7 REMARK 620 5 HOH B 726 O 174.1 84.1 93.6 96.6 REMARK 620 6 HOH B 799 O 91.3 169.6 86.0 78.3 93.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 704 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 38 OD2 REMARK 620 2 ASP B 191 OD1 88.1 REMARK 620 3 ASP B 229 OD2 169.0 87.9 REMARK 620 4 HOH B 799 O 103.3 162.9 83.0 REMARK 620 5 HOH B 800 O 92.7 88.3 97.4 78.7 REMARK 620 6 HOH B 805 O 87.3 98.0 83.1 95.3 173.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 705 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 118 OD2 REMARK 620 2 SER B 160 O 93.6 REMARK 620 3 SER B 160 OG 165.3 79.8 REMARK 620 4 ASP B 191 OD2 99.5 159.5 90.6 REMARK 620 5 HOH B 720 O 87.3 96.4 80.5 99.8 REMARK 620 6 HOH B 798 O 89.4 79.9 102.2 84.5 174.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 705 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV0018C RELATED DB: TARGETDB DBREF 1TXO A 4 240 UNP Q8VKT2 Q8VKT2_MYCTU 1 237 DBREF 1TXO B 4 240 UNP Q8VKT2 Q8VKT2_MYCTU 1 237 SEQADV 1TXO MSE A 4 UNP Q8VKT2 MET 1 MODIFIED RESIDUE SEQADV 1TXO MSE A 40 UNP Q8VKT2 MET 37 MODIFIED RESIDUE SEQADV 1TXO MSE A 90 UNP Q8VKT2 MET 87 MODIFIED RESIDUE SEQADV 1TXO MSE A 97 UNP Q8VKT2 MET 94 MODIFIED RESIDUE SEQADV 1TXO MSE A 163 UNP Q8VKT2 MET 160 MODIFIED RESIDUE SEQADV 1TXO MSE A 177 UNP Q8VKT2 MET 174 MODIFIED RESIDUE SEQADV 1TXO LEU A 238 UNP Q8VKT2 VAL 235 CONFLICT SEQADV 1TXO GLU A 239 UNP Q8VKT2 VAL 236 CONFLICT SEQADV 1TXO HIS A 240 UNP Q8VKT2 ASP 237 CONFLICT SEQADV 1TXO MSE B 4 UNP Q8VKT2 MET 1 MODIFIED RESIDUE SEQADV 1TXO MSE B 40 UNP Q8VKT2 MET 37 MODIFIED RESIDUE SEQADV 1TXO MSE B 90 UNP Q8VKT2 MET 87 MODIFIED RESIDUE SEQADV 1TXO MSE B 97 UNP Q8VKT2 MET 94 MODIFIED RESIDUE SEQADV 1TXO MSE B 163 UNP Q8VKT2 MET 160 MODIFIED RESIDUE SEQADV 1TXO MSE B 177 UNP Q8VKT2 MET 174 MODIFIED RESIDUE SEQADV 1TXO LEU B 238 UNP Q8VKT2 VAL 235 CONFLICT SEQADV 1TXO GLU B 239 UNP Q8VKT2 VAL 236 CONFLICT SEQADV 1TXO HIS B 240 UNP Q8VKT2 ASP 237 CONFLICT SEQRES 1 A 237 MSE THR LEU VAL LEU ARG TYR ALA ALA ARG SER ASP ARG SEQRES 2 A 237 GLY LEU VAL ARG ALA ASN ASN GLU ASP SER VAL TYR ALA SEQRES 3 A 237 GLY ALA ARG LEU LEU ALA LEU ALA ASP GLY MSE GLY GLY SEQRES 4 A 237 HIS ALA ALA GLY GLU VAL ALA SER GLN LEU VAL ILE ALA SEQRES 5 A 237 ALA LEU ALA HIS LEU ASP ASP ASP GLU PRO GLY GLY ASP SEQRES 6 A 237 LEU LEU ALA LYS LEU ASP ALA ALA VAL ARG ALA GLY ASN SEQRES 7 A 237 SER ALA ILE ALA ALA GLN VAL GLU MSE GLU PRO ASP LEU SEQRES 8 A 237 GLU GLY MSE GLY THR THR LEU THR ALA ILE LEU PHE ALA SEQRES 9 A 237 GLY ASN ARG LEU GLY LEU VAL HIS ILE GLY ASP SER ARG SEQRES 10 A 237 GLY TYR LEU LEU ARG ASP GLY GLU LEU THR GLN ILE THR SEQRES 11 A 237 LYS ASP ASP THR PHE VAL GLN THR LEU VAL ASP GLU GLY SEQRES 12 A 237 ARG ILE THR PRO GLU GLU ALA HIS SER HIS PRO GLN ARG SEQRES 13 A 237 SER LEU ILE MSE ARG ALA LEU THR GLY HIS GLU VAL GLU SEQRES 14 A 237 PRO THR LEU THR MSE ARG GLU ALA ARG ALA GLY ASP ARG SEQRES 15 A 237 TYR LEU LEU CYS SER ASP GLY LEU SER ASP PRO VAL SER SEQRES 16 A 237 ASP GLU THR ILE LEU GLU ALA LEU GLN ILE PRO GLU VAL SEQRES 17 A 237 ALA GLU SER ALA HIS ARG LEU ILE GLU LEU ALA LEU ARG SEQRES 18 A 237 GLY GLY GLY PRO ASP ASN VAL THR VAL VAL VAL ALA ASP SEQRES 19 A 237 LEU GLU HIS SEQRES 1 B 237 MSE THR LEU VAL LEU ARG TYR ALA ALA ARG SER ASP ARG SEQRES 2 B 237 GLY LEU VAL ARG ALA ASN ASN GLU ASP SER VAL TYR ALA SEQRES 3 B 237 GLY ALA ARG LEU LEU ALA LEU ALA ASP GLY MSE GLY GLY SEQRES 4 B 237 HIS ALA ALA GLY GLU VAL ALA SER GLN LEU VAL ILE ALA SEQRES 5 B 237 ALA LEU ALA HIS LEU ASP ASP ASP GLU PRO GLY GLY ASP SEQRES 6 B 237 LEU LEU ALA LYS LEU ASP ALA ALA VAL ARG ALA GLY ASN SEQRES 7 B 237 SER ALA ILE ALA ALA GLN VAL GLU MSE GLU PRO ASP LEU SEQRES 8 B 237 GLU GLY MSE GLY THR THR LEU THR ALA ILE LEU PHE ALA SEQRES 9 B 237 GLY ASN ARG LEU GLY LEU VAL HIS ILE GLY ASP SER ARG SEQRES 10 B 237 GLY TYR LEU LEU ARG ASP GLY GLU LEU THR GLN ILE THR SEQRES 11 B 237 LYS ASP ASP THR PHE VAL GLN THR LEU VAL ASP GLU GLY SEQRES 12 B 237 ARG ILE THR PRO GLU GLU ALA HIS SER HIS PRO GLN ARG SEQRES 13 B 237 SER LEU ILE MSE ARG ALA LEU THR GLY HIS GLU VAL GLU SEQRES 14 B 237 PRO THR LEU THR MSE ARG GLU ALA ARG ALA GLY ASP ARG SEQRES 15 B 237 TYR LEU LEU CYS SER ASP GLY LEU SER ASP PRO VAL SER SEQRES 16 B 237 ASP GLU THR ILE LEU GLU ALA LEU GLN ILE PRO GLU VAL SEQRES 17 B 237 ALA GLU SER ALA HIS ARG LEU ILE GLU LEU ALA LEU ARG SEQRES 18 B 237 GLY GLY GLY PRO ASP ASN VAL THR VAL VAL VAL ALA ASP SEQRES 19 B 237 LEU GLU HIS MODRES 1TXO MSE A 40 MET SELENOMETHIONINE MODRES 1TXO MSE A 90 MET SELENOMETHIONINE MODRES 1TXO MSE A 97 MET SELENOMETHIONINE MODRES 1TXO MSE A 163 MET SELENOMETHIONINE MODRES 1TXO MSE A 177 MET SELENOMETHIONINE MODRES 1TXO MSE B 40 MET SELENOMETHIONINE MODRES 1TXO MSE B 90 MET SELENOMETHIONINE MODRES 1TXO MSE B 97 MET SELENOMETHIONINE MODRES 1TXO MSE B 163 MET SELENOMETHIONINE MODRES 1TXO MSE B 177 MET SELENOMETHIONINE HET MSE A 40 8 HET MSE A 90 8 HET MSE A 97 8 HET MSE A 163 8 HET MSE A 177 8 HET MSE B 40 8 HET MSE B 90 8 HET MSE B 97 8 HET MSE B 163 8 HET MSE B 177 8 HET MN A 700 1 HET MN A 701 1 HET MN A 702 1 HET MN B 703 1 HET MN B 704 1 HET MN B 705 1 HETNAM MSE SELENOMETHIONINE HETNAM MN MANGANESE (II) ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 MN 6(MN 2+) FORMUL 9 HOH *241(H2 O) HELIX 1 1 ALA A 44 ALA A 58 1 15 HELIX 2 2 HIS A 59 ASP A 62 5 4 HELIX 3 3 ASP A 68 GLU A 91 1 24 HELIX 4 4 PRO A 92 GLU A 95 5 4 HELIX 5 5 THR A 137 GLU A 145 1 9 HELIX 6 6 GLU A 151 HIS A 156 5 6 HELIX 7 7 SER A 190 ASP A 195 1 6 HELIX 8 8 SER A 198 GLN A 207 1 10 HELIX 9 9 GLU A 210 GLY A 225 1 16 HELIX 10 10 ALA B 44 HIS B 59 1 16 HELIX 11 11 LEU B 60 ASP B 63 5 4 HELIX 12 12 ASP B 68 GLU B 91 1 24 HELIX 13 13 PRO B 92 GLU B 95 5 4 HELIX 14 14 THR B 137 GLU B 145 1 9 HELIX 15 15 THR B 149 HIS B 154 1 6 HELIX 16 16 SER B 190 ASP B 195 1 6 HELIX 17 17 SER B 198 LEU B 206 1 9 HELIX 18 18 GLU B 210 GLY B 225 1 16 SHEET 1 A 5 VAL A 7 ASP A 15 0 SHEET 2 A 5 VAL A 231 GLU A 239 -1 O ASP A 237 N ARG A 9 SHEET 3 A 5 ARG A 185 CYS A 189 -1 N TYR A 186 O ALA A 236 SHEET 4 A 5 ARG A 120 ARG A 125 -1 N LEU A 124 O ARG A 185 SHEET 5 A 5 GLU A 128 GLN A 131 -1 O THR A 130 N LEU A 123 SHEET 1 B 3 ASP A 25 ALA A 29 0 SHEET 2 B 3 LEU A 33 MSE A 40 -1 O ALA A 37 N SER A 26 SHEET 3 B 3 GLY A 98 THR A 99 -1 O GLY A 98 N MSE A 40 SHEET 1 C 5 ASP A 25 ALA A 29 0 SHEET 2 C 5 LEU A 33 MSE A 40 -1 O ALA A 37 N SER A 26 SHEET 3 C 5 LEU A 101 ALA A 107 -1 O ILE A 104 N LEU A 34 SHEET 4 C 5 ARG A 110 ILE A 116 -1 O ARG A 110 N ALA A 107 SHEET 5 C 5 THR A 174 GLU A 179 -1 O THR A 176 N LEU A 113 SHEET 1 D 5 VAL B 7 ASP B 15 0 SHEET 2 D 5 VAL B 231 GLU B 239 -1 O VAL B 233 N ARG B 13 SHEET 3 D 5 ARG B 185 CYS B 189 -1 N TYR B 186 O ALA B 236 SHEET 4 D 5 ARG B 120 ARG B 125 -1 N LEU B 124 O ARG B 185 SHEET 5 D 5 GLU B 128 GLN B 131 -1 O THR B 130 N LEU B 123 SHEET 1 E 3 ASP B 25 ALA B 29 0 SHEET 2 E 3 LEU B 33 MSE B 40 -1 O ALA B 37 N SER B 26 SHEET 3 E 3 GLY B 98 THR B 99 -1 O GLY B 98 N MSE B 40 SHEET 1 F 5 ASP B 25 ALA B 29 0 SHEET 2 F 5 LEU B 33 MSE B 40 -1 O ALA B 37 N SER B 26 SHEET 3 F 5 LEU B 101 ALA B 107 -1 O ILE B 104 N LEU B 34 SHEET 4 F 5 ARG B 110 ILE B 116 -1 O ILE B 116 N LEU B 101 SHEET 5 F 5 THR B 174 GLU B 179 -1 O THR B 176 N LEU B 113 LINK C GLY A 39 N MSE A 40 1555 1555 1.33 LINK C MSE A 40 N GLY A 41 1555 1555 1.33 LINK C GLU A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N GLU A 91 1555 1555 1.33 LINK C GLY A 96 N MSE A 97 1555 1555 1.33 LINK C MSE A 97 N GLY A 98 1555 1555 1.32 LINK C ILE A 162 N MSE A 163 1555 1555 1.33 LINK C MSE A 163 N ARG A 164 1555 1555 1.33 LINK C THR A 176 N MSE A 177 1555 1555 1.33 LINK C MSE A 177 N ARG A 178 1555 1555 1.33 LINK C GLY B 39 N MSE B 40 1555 1555 1.33 LINK C MSE B 40 N GLY B 41 1555 1555 1.33 LINK C GLU B 89 N MSE B 90 1555 1555 1.33 LINK C MSE B 90 N GLU B 91 1555 1555 1.33 LINK C GLY B 96 N MSE B 97 1555 1555 1.33 LINK C MSE B 97 N GLY B 98 1555 1555 1.32 LINK C ILE B 162 N MSE B 163 1555 1555 1.33 LINK C MSE B 163 N ARG B 164 1555 1555 1.33 LINK C THR B 176 N MSE B 177 1555 1555 1.33 LINK C MSE B 177 N ARG B 178 1555 1555 1.33 LINK OD2 ASP A 38 MN MN A 700 1555 1555 2.17 LINK OD1 ASP A 38 MN MN A 701 1555 1555 2.15 LINK O GLY A 39 MN MN A 701 1555 1555 2.22 LINK OD2 ASP A 118 MN MN A 702 1555 1555 1.89 LINK O SER A 160 MN MN A 702 1555 1555 2.15 LINK OG SER A 160 MN MN A 702 1555 1555 2.06 LINK OD1 ASP A 191 MN MN A 700 1555 1555 2.16 LINK OD2 ASP A 191 MN MN A 702 1555 1555 2.27 LINK OD2 ASP A 229 MN MN A 700 1555 1555 2.09 LINK MN MN A 700 O HOH A 705 1555 1555 2.21 LINK MN MN A 700 O HOH A 726 1555 1555 2.19 LINK MN MN A 700 O HOH A 831 1555 1555 2.13 LINK MN MN A 701 O HOH A 715 1555 1555 2.41 LINK MN MN A 701 O HOH A 723 1555 1555 2.24 LINK MN MN A 701 O HOH A 724 1555 1555 2.38 LINK MN MN A 701 O HOH A 831 1555 1555 2.32 LINK MN MN A 702 O HOH A 707 1555 1555 2.27 LINK MN MN A 702 O HOH A 832 1555 1555 2.04 LINK OD1 ASP B 38 MN MN B 703 1555 1555 2.13 LINK OD2 ASP B 38 MN MN B 704 1555 1555 2.12 LINK O GLY B 39 MN MN B 703 1555 1555 2.25 LINK OD2 ASP B 118 MN MN B 705 1555 1555 2.04 LINK O SER B 160 MN MN B 705 1555 1555 2.18 LINK OG SER B 160 MN MN B 705 1555 1555 2.13 LINK OD1 ASP B 191 MN MN B 704 1555 1555 2.15 LINK OD2 ASP B 191 MN MN B 705 1555 1555 2.21 LINK OD2 ASP B 229 MN MN B 704 1555 1555 2.23 LINK MN MN B 703 O HOH B 718 1555 1555 2.43 LINK MN MN B 703 O HOH B 725 1555 1555 2.34 LINK MN MN B 703 O HOH B 726 1555 1555 2.46 LINK MN MN B 703 O HOH B 799 1555 1555 2.32 LINK MN MN B 704 O HOH B 799 1555 1555 2.13 LINK MN MN B 704 O HOH B 800 1555 1555 2.14 LINK MN MN B 704 O HOH B 805 1555 1555 2.10 LINK MN MN B 705 O HOH B 720 1555 1555 2.38 LINK MN MN B 705 O HOH B 798 1555 1555 2.21 SITE 1 AC1 6 ASP A 38 ASP A 191 ASP A 229 HOH A 705 SITE 2 AC1 6 HOH A 726 HOH A 831 SITE 1 AC2 6 ASP A 38 GLY A 39 HOH A 715 HOH A 723 SITE 2 AC2 6 HOH A 724 HOH A 831 SITE 1 AC3 5 ASP A 118 SER A 160 ASP A 191 HOH A 707 SITE 2 AC3 5 HOH A 832 SITE 1 AC4 6 ASP B 38 GLY B 39 HOH B 718 HOH B 725 SITE 2 AC4 6 HOH B 726 HOH B 799 SITE 1 AC5 6 ASP B 38 ASP B 191 ASP B 229 HOH B 799 SITE 2 AC5 6 HOH B 800 HOH B 805 SITE 1 AC6 5 ASP B 118 SER B 160 ASP B 191 HOH B 720 SITE 2 AC6 5 HOH B 798 CRYST1 67.638 58.757 73.815 90.00 102.15 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014785 0.000000 0.003183 0.00000 SCALE2 0.000000 0.017019 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013858 0.00000