HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 06-JUL-04 1TXZ TITLE CRYSTAL STRUCTURE OF YEAST YMX7, AN ADP-RIBOSE-1''-MONOPHOSPHATASE, TITLE 2 COMPLEXED WITH ADP-RIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL 32.1 KDA PROTEIN IN ADH3-RCA1 INTERGENIC COMPND 3 REGION; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: YMX7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: YMR087W, YM9582.12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, DIMER, TWO DOMAIN ORGANIZATION, ADP-RIBOSE KEYWDS 2 COMPLEX, PSI, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR D.KUMARAN,S.SWAMINATHAN,S.K.BURLEY,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 8 23-AUG-23 1TXZ 1 REMARK REVDAT 7 03-FEB-21 1TXZ 1 AUTHOR REMARK LINK REVDAT 6 11-OCT-17 1TXZ 1 REMARK REVDAT 5 13-JUL-11 1TXZ 1 VERSN REVDAT 4 24-FEB-09 1TXZ 1 VERSN REVDAT 3 29-MAR-05 1TXZ 1 JRNL REVDAT 2 25-JAN-05 1TXZ 1 AUTHOR KEYWDS REMARK REVDAT 1 30-NOV-04 1TXZ 0 JRNL AUTH D.KUMARAN,S.ESWARAMOORTHY,F.W.STUDIER,S.SWAMINATHAN JRNL TITL STRUCTURE AND MECHANISM OF ADP-RIBOSE-1''-MONOPHOSPHATASE JRNL TITL 2 (APPR-1''-PASE), A UBIQUITOUS CELLULAR PROCESSING ENZYME. JRNL REF PROTEIN SCI. V. 14 719 2005 JRNL REFN ISSN 0961-8368 JRNL PMID 15722447 JRNL DOI 10.1110/PS.041132005 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 13851 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1105 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 30 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1977 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.33000 REMARK 3 B22 (A**2) : 8.10200 REMARK 3 B33 (A**2) : -4.77200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -10.05600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.520 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1TXZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023018. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS - B4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14181 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.02800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.16000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 SOFTWARE USED: DIFFERENCE FOURIER REMARK 200 STARTING MODEL: PDB ENTRY 1NJR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, CITRIC ACID, ETHYLENE REMARK 280 GLYCOL, PH 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.71850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.96550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.71850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.96550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED BY REMARK 300 THE CRYSTALLOGRAPHIC TWO FOLD AXIS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 107.43700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 ASN A 6 REMARK 465 ARG A 7 REMARK 465 HIS A 8 REMARK 465 SER A 9 REMARK 465 LEU A 10 REMARK 465 LEU A 11 REMARK 465 ASN A 12 REMARK 465 GLY A 13 REMARK 465 VAL A 14 REMARK 465 LYS A 15 REMARK 465 HIS A 38 REMARK 465 ALA A 39 REMARK 465 TYR A 40 REMARK 465 ILE A 41 REMARK 465 GLN A 42 REMARK 465 ASN A 43 REMARK 465 ASP A 44 REMARK 465 ILE A 67 REMARK 465 HIS A 68 REMARK 465 HIS A 69 REMARK 465 GLY A 70 REMARK 465 GLU A 131 REMARK 465 LYS A 132 REMARK 465 THR A 133 REMARK 465 ILE A 134 REMARK 465 LEU A 280 REMARK 465 THR A 281 REMARK 465 LEU A 282 REMARK 465 ASP A 283 REMARK 465 LEU A 284 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 101 N PRO A 101 CA 0.195 REMARK 500 PRO A 101 CD PRO A 101 N -0.275 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 101 C - N - CA ANGL. DEV. = -16.5 DEGREES REMARK 500 PRO A 101 N - CA - CB ANGL. DEV. = -8.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 62 9.63 -159.35 REMARK 500 ASP A 138 -144.35 53.14 REMARK 500 PRO A 152 46.74 -77.91 REMARK 500 TYR A 237 72.88 -119.36 REMARK 500 PRO A 238 75.52 -67.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 289 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 78 O REMARK 620 2 ASP A 90 N 134.7 REMARK 620 3 APR A 285 O1A 111.3 98.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 287 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 288 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 289 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE APR A 285 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 286 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NJR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF YEAST HYPOTHETICAL PROTEIN YMX7 REMARK 900 RELATED ID: NYSGXRC-P089 RELATED DB: TARGETDB DBREF 1TXZ A 1 284 UNP Q04299 YMX7_YEAST 1 284 SEQRES 1 A 284 MET THR GLY SER LEU ASN ARG HIS SER LEU LEU ASN GLY SEQRES 2 A 284 VAL LYS LYS MET ARG ILE ILE LEU CYS ASP THR ASN GLU SEQRES 3 A 284 VAL VAL THR ASN LEU TRP GLN GLU SER ILE PRO HIS ALA SEQRES 4 A 284 TYR ILE GLN ASN ASP LYS TYR LEU CYS ILE HIS HIS GLY SEQRES 5 A 284 HIS LEU GLN SER LEU MET ASP SER MET ARG LYS GLY ASP SEQRES 6 A 284 ALA ILE HIS HIS GLY HIS SER TYR ALA ILE VAL SER PRO SEQRES 7 A 284 GLY ASN SER TYR GLY TYR LEU GLY GLY GLY PHE ASP LYS SEQRES 8 A 284 ALA LEU TYR ASN TYR PHE GLY GLY LYS PRO PHE GLU THR SEQRES 9 A 284 TRP PHE ARG ASN GLN LEU GLY GLY ARG TYR HIS THR VAL SEQRES 10 A 284 GLY SER ALA THR VAL VAL ASP LEU GLN ARG CYS LEU GLU SEQRES 11 A 284 GLU LYS THR ILE GLU CYS ARG ASP GLY ILE ARG TYR ILE SEQRES 12 A 284 ILE HIS VAL PRO THR VAL VAL ALA PRO SER ALA PRO ILE SEQRES 13 A 284 PHE ASN PRO GLN ASN PRO LEU LYS THR GLY PHE GLU PRO SEQRES 14 A 284 VAL PHE ASN ALA MET TRP ASN ALA LEU MET HIS SER PRO SEQRES 15 A 284 LYS ASP ILE ASP GLY LEU ILE ILE PRO GLY LEU CYS THR SEQRES 16 A 284 GLY TYR ALA GLY VAL PRO PRO ILE ILE SER CYS LYS SER SEQRES 17 A 284 MET ALA PHE ALA LEU ARG LEU TYR MET ALA GLY ASP HIS SEQRES 18 A 284 ILE SER LYS GLU LEU LYS ASN VAL LEU ILE MET TYR TYR SEQRES 19 A 284 LEU GLN TYR PRO PHE GLU PRO PHE PHE PRO GLU SER CYS SEQRES 20 A 284 LYS ILE GLU CYS GLN LYS LEU GLY ILE ASP ILE GLU MET SEQRES 21 A 284 LEU LYS SER PHE ASN VAL GLU LYS ASP ALA ILE GLU LEU SEQRES 22 A 284 LEU ILE PRO ARG ARG ILE LEU THR LEU ASP LEU HET SO4 A 287 5 HET SO4 A 288 5 HET NA A 289 1 HET APR A 285 36 HET EDO A 286 4 HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETNAM APR ADENOSINE-5-DIPHOSPHORIBOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 NA NA 1+ FORMUL 5 APR C15 H23 N5 O14 P2 FORMUL 6 EDO C2 H6 O2 FORMUL 7 HOH *87(H2 O) HELIX 1 1 ASN A 25 ILE A 36 1 12 HELIX 2 2 HIS A 53 MET A 61 1 9 HELIX 3 3 GLY A 87 PHE A 97 1 11 HELIX 4 4 GLY A 98 LEU A 110 1 13 HELIX 5 5 GLN A 126 GLU A 130 5 5 HELIX 6 6 GLY A 166 HIS A 180 1 15 HELIX 7 7 PRO A 201 ALA A 218 1 18 HELIX 8 8 GLY A 219 ILE A 222 5 4 HELIX 9 9 SER A 223 LEU A 235 1 13 HELIX 10 10 PHE A 239 PHE A 243 5 5 HELIX 11 11 PRO A 244 GLY A 255 1 12 HELIX 12 12 ASP A 257 SER A 263 1 7 HELIX 13 13 ALA A 270 LEU A 274 5 5 SHEET 1 A 6 LEU A 47 HIS A 51 0 SHEET 2 A 6 ARG A 18 ASP A 23 1 N LEU A 21 O HIS A 50 SHEET 3 A 6 GLY A 187 ILE A 190 1 O LEU A 188 N ILE A 20 SHEET 4 A 6 TYR A 73 ASN A 80 1 N VAL A 76 O ILE A 189 SHEET 5 A 6 ILE A 140 VAL A 149 1 O THR A 148 N GLY A 79 SHEET 6 A 6 THR A 121 ASP A 124 -1 N THR A 121 O HIS A 145 SSBOND 1 CYS A 128 CYS A 136 1555 1555 2.03 LINK O PRO A 78 NA NA A 289 1555 1555 2.50 LINK N ASP A 90 NA NA A 289 1555 1555 2.89 LINK O1A APR A 285 NA NA A 289 1555 1555 2.94 SITE 1 AC1 9 ARG A 113 HIS A 115 SER A 119 ASN A 176 SITE 2 AC1 9 HIS A 180 HOH A 293 HOH A 303 HOH A 312 SITE 3 AC1 9 HOH A 320 SITE 1 AC2 4 GLY A 52 HIS A 53 SER A 56 ASN A 95 SITE 1 AC3 5 PRO A 78 GLY A 87 PHE A 89 ASP A 90 SITE 2 AC3 5 APR A 285 SITE 1 AC4 27 ASP A 23 THR A 24 GLY A 52 HIS A 53 SITE 2 AC4 27 LEU A 54 GLN A 55 PRO A 78 GLY A 79 SITE 3 AC4 27 ASN A 80 TYR A 84 GLY A 87 GLY A 88 SITE 4 AC4 27 PHE A 89 ASP A 90 ALA A 92 THR A 148 SITE 5 AC4 27 VAL A 149 GLY A 192 CYS A 194 THR A 195 SITE 6 AC4 27 GLY A 196 TYR A 197 ALA A 198 EDO A 286 SITE 7 AC4 27 NA A 289 HOH A 300 HOH A 376 SITE 1 AC5 6 GLY A 86 GLY A 87 PRO A 152 PHE A 239 SITE 2 AC5 6 APR A 285 HOH A 376 CRYST1 107.437 37.931 62.514 90.00 112.30 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009308 0.000000 0.003817 0.00000 SCALE2 0.000000 0.026364 -0.000001 0.00000 SCALE3 0.000000 0.000000 0.017289 0.00000