HEADER ISOMERASE, LYASE 16-JUL-04 1U1X TITLE STRUCTURE AND FUNCTION OF PHENAZINE-BIOSYNTHESIS PROTEIN PHZF FROM TITLE 2 PSEUDOMONAS FLUORESCENS 2-79 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENAZINE BIOSYNTHESIS PROTEIN PHZF; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS; SOURCE 3 ORGANISM_TAXID: 294; SOURCE 4 GENE: PHZF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA PLYS S; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PHENAZINE BIOSYNTHESIS, ACID/BASE CATALYSIS, CLOSED FORM, SUBSTRATE KEYWDS 2 COMPLEX, ISOMERASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR W.BLANKENFELDT,A.P.KUZIN,T.SKARINA,Y.KORNIYENKO,L.TONG,P.BAYER, AUTHOR 2 P.JANNING,L.S.THOMASHOW,D.V.MAVRODI REVDAT 5 23-AUG-23 1U1X 1 REMARK SEQADV REVDAT 4 13-JUL-11 1U1X 1 VERSN REVDAT 3 24-FEB-09 1U1X 1 VERSN REVDAT 2 23-NOV-04 1U1X 1 JRNL REVDAT 1 02-NOV-04 1U1X 0 JRNL AUTH W.BLANKENFELDT,A.P.KUZIN,T.SKARINA,Y.KORNIYENKO,L.TONG, JRNL AUTH 2 P.BAYER,P.JANNING,L.S.THOMASHOW,D.V.MAVRODI JRNL TITL STRUCTURE AND FUNCTION OF THE PHENAZINE BIOSYNTHETIC PROTEIN JRNL TITL 2 PHZF FROM PSEUDOMONAS FLUORESCENS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 16431 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15545603 JRNL DOI 10.1073/PNAS.0407371101 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 40681 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2163 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2896 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4248 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 373 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.350 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4589 ; 0.025 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4196 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6274 ; 1.885 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9713 ; 3.815 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 601 ; 6.609 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 695 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5325 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 966 ; 0.014 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 889 ; 0.237 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4849 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2456 ; 0.114 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 286 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.199 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 101 ; 0.327 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.168 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2921 ; 1.180 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4713 ; 1.977 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1668 ; 3.212 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1561 ; 5.044 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 278 REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9780 31.0259 24.8034 REMARK 3 T TENSOR REMARK 3 T11: 0.0501 T22: 0.0261 REMARK 3 T33: 0.0245 T12: 0.0011 REMARK 3 T13: 0.0000 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.3388 L22: 0.0824 REMARK 3 L33: 0.1737 L12: 0.0512 REMARK 3 L13: -0.1300 L23: 0.0204 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: 0.0169 S13: 0.0201 REMARK 3 S21: 0.0024 S22: 0.0144 S23: -0.0022 REMARK 3 S31: -0.0234 S32: -0.0167 S33: -0.0200 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 278 REMARK 3 RESIDUE RANGE : B 402 B 402 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8672 10.3990 1.7745 REMARK 3 T TENSOR REMARK 3 T11: 0.0738 T22: 0.0302 REMARK 3 T33: 0.0028 T12: -0.0239 REMARK 3 T13: -0.0078 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.0963 L22: -0.0033 REMARK 3 L33: 0.8467 L12: -0.0109 REMARK 3 L13: -0.0358 L23: -0.1723 REMARK 3 S TENSOR REMARK 3 S11: -0.0185 S12: 0.0175 S13: 0.0168 REMARK 3 S21: -0.0150 S22: 0.0548 S23: -0.0347 REMARK 3 S31: 0.1067 S32: -0.0833 S33: -0.0363 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1U1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-04. REMARK 100 THE DEPOSITION ID IS D_1000023143. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR571 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43151 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28400 REMARK 200 FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1U1V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA-CITRATE, 0.2M NH4-ACETATE, 28% REMARK 280 (W/V) PEG 4000, CRYSTALS INDUCED WITH 10MM 3-HYDROXYANTHRANILIC REMARK 280 ACID (INHIBITOR), THEN CROSS-SOAKED IN MOTHER LIQUOR CONTAINING REMARK 280 10MM HHA FOR 10 DAYS, PH 4.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 46.30000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.93000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.30000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.93000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 227 O HOH B 535 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 205 CB VAL A 205 CG2 -0.128 REMARK 500 ARG A 273 CB ARG A 273 CG -0.171 REMARK 500 ASN B 109 CB ASN B 109 CG 0.154 REMARK 500 ARG B 192 CG ARG B 192 CD 0.165 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 57 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP A 88 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 88 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 107 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 193 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 261 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP B 8 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP B 28 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 15 -10.60 84.87 REMARK 500 ASN A 54 37.86 -144.00 REMARK 500 SER A 200 85.39 -154.46 REMARK 500 LEU B 15 -1.79 79.45 REMARK 500 ASN B 54 32.72 -146.11 REMARK 500 ALA B 72 146.27 -171.64 REMARK 500 ASN B 109 -138.81 65.96 REMARK 500 ARG B 129 42.76 -147.70 REMARK 500 ALA B 190 140.37 -171.51 REMARK 500 SER B 200 83.97 -162.68 REMARK 500 GLN B 258 90.70 -163.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HHA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HHA B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BWZ RELATED DB: PDB REMARK 900 DIAMINOPIMELATE EPIMERASE DAPF REMARK 900 RELATED ID: 1SDJ RELATED DB: PDB REMARK 900 YDDE E. COLI REMARK 900 RELATED ID: 1S7J RELATED DB: PDB REMARK 900 PHENAZINE BIOSYNTHESIS PROTEIN E. FAECALIS REMARK 900 RELATED ID: 1U1V RELATED DB: PDB REMARK 900 RELATED ID: 1U1W RELATED DB: PDB DBREF 1U1X A 1 278 UNP Q51792 PHZF_PSEFL 1 278 DBREF 1U1X B 1 278 UNP Q51792 PHZF_PSEFL 1 278 SEQADV 1U1X MET A -19 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X GLY A -18 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X SER A -17 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X SER A -16 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X HIS A -15 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X HIS A -14 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X HIS A -13 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X HIS A -12 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X HIS A -11 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X HIS A -10 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X SER A -9 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X SER A -8 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X GLY A -7 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X LEU A -6 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X VAL A -5 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X PRO A -4 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X ARG A -3 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X GLY A -2 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X SER A -1 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X HIS A 0 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X MET B -19 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X GLY B -18 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X SER B -17 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X SER B -16 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X HIS B -15 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X HIS B -14 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X HIS B -13 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X HIS B -12 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X HIS B -11 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X HIS B -10 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X SER B -9 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X SER B -8 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X GLY B -7 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X LEU B -6 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X VAL B -5 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X PRO B -4 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X ARG B -3 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X GLY B -2 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X SER B -1 UNP Q51792 CLONING ARTIFACT SEQADV 1U1X HIS B 0 UNP Q51792 CLONING ARTIFACT SEQRES 1 A 298 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 298 LEU VAL PRO ARG GLY SER HIS MET HIS ASN TYR VAL ILE SEQRES 3 A 298 ILE ASP ALA PHE ALA SER VAL PRO LEU GLU GLY ASN PRO SEQRES 4 A 298 VAL ALA VAL PHE PHE ASP ALA ASP ASP LEU PRO PRO ALA SEQRES 5 A 298 GLN MET GLN ARG ILE ALA ARG GLU MET ASN LEU SER GLU SEQRES 6 A 298 SER THR PHE VAL LEU LYS PRO ARG ASN GLY GLY ASP ALA SEQRES 7 A 298 LEU ILE ARG ILE PHE THR PRO VAL ASN GLU LEU PRO PHE SEQRES 8 A 298 ALA GLY HIS PRO LEU LEU GLY THR ALA ILE ALA LEU GLY SEQRES 9 A 298 ALA HIS THR ASP ASN HIS ARG LEU TYR LEU GLU THR GLN SEQRES 10 A 298 MET GLY THR ILE ALA PHE GLU LEU GLU ARG GLN ASN GLY SEQRES 11 A 298 SER VAL ILE ALA ALA SER MET ASP GLN PRO ILE PRO THR SEQRES 12 A 298 TRP THR ALA LEU GLY ARG ASP ALA GLU LEU LEU LYS ALA SEQRES 13 A 298 LEU GLY ILE SER ASP SER THR PHE PRO ILE GLU ILE TYR SEQRES 14 A 298 HIS ASN GLY PRO ARG HIS VAL PHE VAL GLY LEU PRO SER SEQRES 15 A 298 ILE ASP ALA LEU SER ALA LEU HIS PRO ASP HIS ARG ALA SEQRES 16 A 298 LEU SER ASN PHE HIS ASP MET ALA ILE ASN CYS PHE ALA SEQRES 17 A 298 GLY ALA GLY ARG ARG TRP ARG SER ARG MET PHE SER PRO SEQRES 18 A 298 ALA TYR GLY VAL VAL GLU ASP ALA ALA THR GLY SER ALA SEQRES 19 A 298 ALA GLY PRO LEU ALA ILE HIS LEU ALA ARG HIS GLY GLN SEQRES 20 A 298 ILE GLU PHE GLY GLN PRO VAL GLU ILE LEU GLN GLY VAL SEQRES 21 A 298 GLU ILE GLY ARG PRO SER LEU MET PHE ALA LYS ALA GLU SEQRES 22 A 298 GLY ARG ALA GLU GLN LEU THR ARG VAL GLU VAL SER GLY SEQRES 23 A 298 ASN GLY VAL THR PHE GLY ARG GLY THR ILE VAL LEU SEQRES 1 B 298 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 298 LEU VAL PRO ARG GLY SER HIS MET HIS ASN TYR VAL ILE SEQRES 3 B 298 ILE ASP ALA PHE ALA SER VAL PRO LEU GLU GLY ASN PRO SEQRES 4 B 298 VAL ALA VAL PHE PHE ASP ALA ASP ASP LEU PRO PRO ALA SEQRES 5 B 298 GLN MET GLN ARG ILE ALA ARG GLU MET ASN LEU SER GLU SEQRES 6 B 298 SER THR PHE VAL LEU LYS PRO ARG ASN GLY GLY ASP ALA SEQRES 7 B 298 LEU ILE ARG ILE PHE THR PRO VAL ASN GLU LEU PRO PHE SEQRES 8 B 298 ALA GLY HIS PRO LEU LEU GLY THR ALA ILE ALA LEU GLY SEQRES 9 B 298 ALA HIS THR ASP ASN HIS ARG LEU TYR LEU GLU THR GLN SEQRES 10 B 298 MET GLY THR ILE ALA PHE GLU LEU GLU ARG GLN ASN GLY SEQRES 11 B 298 SER VAL ILE ALA ALA SER MET ASP GLN PRO ILE PRO THR SEQRES 12 B 298 TRP THR ALA LEU GLY ARG ASP ALA GLU LEU LEU LYS ALA SEQRES 13 B 298 LEU GLY ILE SER ASP SER THR PHE PRO ILE GLU ILE TYR SEQRES 14 B 298 HIS ASN GLY PRO ARG HIS VAL PHE VAL GLY LEU PRO SER SEQRES 15 B 298 ILE ASP ALA LEU SER ALA LEU HIS PRO ASP HIS ARG ALA SEQRES 16 B 298 LEU SER ASN PHE HIS ASP MET ALA ILE ASN CYS PHE ALA SEQRES 17 B 298 GLY ALA GLY ARG ARG TRP ARG SER ARG MET PHE SER PRO SEQRES 18 B 298 ALA TYR GLY VAL VAL GLU ASP ALA ALA THR GLY SER ALA SEQRES 19 B 298 ALA GLY PRO LEU ALA ILE HIS LEU ALA ARG HIS GLY GLN SEQRES 20 B 298 ILE GLU PHE GLY GLN PRO VAL GLU ILE LEU GLN GLY VAL SEQRES 21 B 298 GLU ILE GLY ARG PRO SER LEU MET PHE ALA LYS ALA GLU SEQRES 22 B 298 GLY ARG ALA GLU GLN LEU THR ARG VAL GLU VAL SER GLY SEQRES 23 B 298 ASN GLY VAL THR PHE GLY ARG GLY THR ILE VAL LEU HET HHA A 401 11 HET HHA B 402 11 HETNAM HHA (2S,3S)-TRANS-2,3-DIHYDRO-3-HYDROXYANTHRANILIC ACID FORMUL 3 HHA 2(C7 H9 N O3) FORMUL 5 HOH *373(H2 O) HELIX 1 1 PRO A 30 ASN A 42 1 13 HELIX 2 2 ALA A 72 ALA A 85 1 14 HELIX 3 3 ARG A 129 GLY A 138 1 10 HELIX 4 4 SER A 162 LEU A 169 1 8 HELIX 5 5 ASP A 172 SER A 177 1 6 HELIX 6 6 PRO A 201 GLY A 204 5 4 HELIX 7 7 THR A 211 HIS A 225 1 15 HELIX 8 8 PRO B 30 ASN B 42 1 13 HELIX 9 9 ALA B 72 ALA B 85 1 14 HELIX 10 10 ARG B 129 GLY B 138 1 10 HELIX 11 11 SER B 162 LEU B 169 1 8 HELIX 12 12 ASP B 172 ASN B 178 1 7 HELIX 13 13 PRO B 201 GLY B 204 5 4 HELIX 14 14 THR B 211 HIS B 225 1 15 SHEET 1 A12 THR A 123 ALA A 126 0 SHEET 2 A12 GLU A 147 HIS A 150 -1 O HIS A 150 N THR A 123 SHEET 3 A12 ARG A 154 GLY A 159 -1 O HIS A 155 N TYR A 149 SHEET 4 A12 ALA A 183 ALA A 190 1 O ASN A 185 N VAL A 156 SHEET 5 A12 ARG A 193 SER A 200 -1 O ARG A 197 N CYS A 186 SHEET 6 A12 VAL A 205 ASP A 208 -1 O VAL A 205 N SER A 200 SHEET 7 A12 ARG A 193 SER A 200 -1 N SER A 200 O VAL A 205 SHEET 8 A12 VAL A 234 GLN A 238 1 O LEU A 237 N TRP A 194 SHEET 9 A12 SER A 246 ARG A 255 -1 O MET A 248 N ILE A 236 SHEET 10 A12 GLN A 258 ILE A 276 -1 O THR A 260 N GLU A 253 SHEET 11 A12 SER A 111 ASP A 118 -1 N MET A 117 O VAL A 264 SHEET 12 A12 GLY A 99 GLN A 108 -1 N GLU A 106 O ILE A 113 SHEET 1 B13 ARG A 91 THR A 96 0 SHEET 2 B13 ALA A 58 PHE A 63 1 N ALA A 58 O GLU A 95 SHEET 3 B13 GLU A 68 LEU A 69 -1 O LEU A 69 N ILE A 62 SHEET 4 B13 ALA A 58 PHE A 63 -1 N ILE A 62 O LEU A 69 SHEET 5 B13 SER A 46 LEU A 50 -1 N LEU A 50 O LEU A 59 SHEET 6 B13 ASN A 18 PHE A 23 1 N PHE A 23 O THR A 47 SHEET 7 B13 HIS A 2 ALA A 9 -1 N ALA A 9 O ASN A 18 SHEET 8 B13 GLN A 258 ILE A 276 -1 O VAL A 269 N ASP A 8 SHEET 9 B13 GLN B 258 ILE B 276 -1 O ARG B 273 N THR A 275 SHEET 10 B13 VAL B 112 ASP B 118 -1 N MET B 117 O VAL B 264 SHEET 11 B13 GLY B 99 ARG B 107 -1 N GLU B 106 O ALA B 114 SHEET 12 B13 ARG B 91 THR B 96 -1 N LEU B 94 O ILE B 101 SHEET 13 B13 ALA B 58 PHE B 63 1 N ILE B 60 O GLU B 95 SHEET 1 C11 GLU B 68 LEU B 69 0 SHEET 2 C11 ALA B 58 PHE B 63 -1 N ILE B 62 O LEU B 69 SHEET 3 C11 SER B 46 LEU B 50 -1 N LEU B 50 O LEU B 59 SHEET 4 C11 ASN B 18 PHE B 23 1 N PHE B 23 O THR B 47 SHEET 5 C11 HIS B 2 ALA B 9 -1 N VAL B 5 O VAL B 22 SHEET 6 C11 GLN B 258 ILE B 276 -1 O VAL B 269 N ASP B 8 SHEET 7 C11 SER B 246 ARG B 255 -1 N LYS B 251 O GLU B 263 SHEET 8 C11 VAL B 234 GLN B 238 -1 N ILE B 236 O MET B 248 SHEET 9 C11 ARG B 193 SER B 200 1 N TRP B 194 O LEU B 237 SHEET 10 C11 VAL B 205 ASP B 208 -1 O VAL B 205 N SER B 200 SHEET 11 C11 ARG B 193 SER B 200 -1 N SER B 200 O VAL B 205 SHEET 1 D 4 ALA B 183 ALA B 190 0 SHEET 2 D 4 ARG B 154 GLY B 159 1 N VAL B 156 O ASN B 185 SHEET 3 D 4 GLU B 147 HIS B 150 -1 N TYR B 149 O HIS B 155 SHEET 4 D 4 THR B 123 ALA B 126 -1 N THR B 125 O ILE B 148 SITE 1 AC1 12 GLU A 45 ALA A 72 GLY A 73 HIS A 74 SITE 2 AC1 12 PRO A 75 MET A 198 ASP A 208 ALA A 210 SITE 3 AC1 12 THR A 211 GLY A 212 SER A 213 HOH A 407 SITE 1 AC2 12 GLU B 45 ALA B 72 GLY B 73 HIS B 74 SITE 2 AC2 12 PRO B 75 MET B 198 ASP B 208 ALA B 210 SITE 3 AC2 12 THR B 211 GLY B 212 SER B 213 HOH B 417 CRYST1 92.600 99.860 57.000 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010799 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010014 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017544 0.00000