HEADER SIGNALING PROTEIN 21-JUL-04 1U3C TITLE CRYSTAL STRUCTURE OF THE PHR DOMAIN OF CRYPTOCHROME 1 FROM ARABIDOPSIS TITLE 2 THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRYPTOCHROME 1 APOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHR DOMAIN, RESIDUES 1-509; COMPND 5 SYNONYM: BLUE LIGHT PHOTORECEPTOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: CRY1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMAL-C2-ATCRY KEYWDS PHOTOLYASE, AMPPNP, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.A.BRAUTIGAM,B.S.SMITH,Z.MA,M.PALNITKAR,D.R.TOMCHICK,M.MACHIUS, AUTHOR 2 J.DEISENHOFER REVDAT 4 20-NOV-24 1U3C 1 REMARK REVDAT 3 23-AUG-23 1U3C 1 REMARK LINK REVDAT 2 24-FEB-09 1U3C 1 VERSN REVDAT 1 24-AUG-04 1U3C 0 JRNL AUTH C.A.BRAUTIGAM,B.S.SMITH,Z.MA,M.PALNITKAR,D.R.TOMCHICK, JRNL AUTH 2 M.MACHIUS,J.DEISENHOFER JRNL TITL STRUCTURE OF THE PHOTOLYASE-LIKE DOMAIN OF CRYPTOCHROME 1 JRNL TITL 2 FROM ARABIDOPSIS THALIANA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 12142 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15299148 JRNL DOI 10.1073/PNAS.0404851101 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 200699.820 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.9 REMARK 3 NUMBER OF REFLECTIONS : 25083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2477 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3340 REMARK 3 BIN R VALUE (WORKING SET) : 0.3390 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 395 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3925 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.79000 REMARK 3 B22 (A**2) : 8.79000 REMARK 3 B33 (A**2) : -17.58000 REMARK 3 B12 (A**2) : 11.91000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.39 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.48 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.960 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.410 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.910 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.820 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.670 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 35.99 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : FAD_RIBITOL_DRG.PARAM REMARK 3 PARAMETER FILE 5 : SB195_DRG.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : FAD_RIBITOL_DRG.TOP REMARK 3 TOPOLOGY FILE 5 : SB195_DRG.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IF NO ELECTRON DENSITY WAS OBSERVED FOR REMARK 3 THE SIDE CHAIN OF A RESIDUE, THE OCCUPANCY FOR THE SIDE-CHAIN REMARK 3 ATOMS WAS SET TO 0.00. REMARK 4 REMARK 4 1U3C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-04. REMARK 100 THE DEPOSITION ID IS D_1000023192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL MONOCHROMATOR, SI REMARK 200 -111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26452 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 12.40 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.80600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 1.1 REMARK 200 STARTING MODEL: E.COLI DNA PHOTOLYASE, PDB ENTRY 1DNP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: GLYCEROL, MES, SULFOBETAINE-195, 1,6 REMARK 280 -HEXANEDIOL, SODIUM, POTASSIUM TARTRATE, PH 5.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 309K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.12250 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.12250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.12250 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 52.12250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 52.12250 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.12250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 VAL A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 CYS A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 SER A 498 REMARK 465 ARG A 499 REMARK 465 ALA A 500 REMARK 465 ALA A 501 REMARK 465 ILE A 502 REMARK 465 GLU A 503 REMARK 465 ASN A 504 REMARK 465 GLY A 505 REMARK 465 SER A 506 REMARK 465 GLU A 507 REMARK 465 GLU A 508 REMARK 465 GLY A 509 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 150 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 19 -72.47 -132.12 REMARK 500 ASP A 21 44.75 -145.08 REMARK 500 LEU A 22 68.29 -68.68 REMARK 500 LYS A 98 41.19 -74.06 REMARK 500 SER A 99 -31.81 -158.09 REMARK 500 ASP A 124 -71.31 -57.83 REMARK 500 ALA A 128 32.40 -74.91 REMARK 500 GLN A 129 11.36 -149.70 REMARK 500 ALA A 192 -130.09 -118.38 REMARK 500 ALA A 207 -31.61 -38.50 REMARK 500 ALA A 245 54.20 -68.12 REMARK 500 HIS A 307 79.29 -159.47 REMARK 500 PRO A 308 -6.52 -54.54 REMARK 500 GLU A 312 -30.31 -142.24 REMARK 500 HIS A 450 63.20 -159.87 REMARK 500 ALA A 454 133.05 -34.83 REMARK 500 SER A 468 -92.11 -110.12 REMARK 500 ALA A 496 74.95 -65.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 470 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 515 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 238 O REMARK 620 2 THR A 246 OG1 104.4 REMARK 620 3 HIS A 358 NE2 125.6 107.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 516 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 241 O REMARK 620 2 SER A 244 O 147.8 REMARK 620 3 SER A 244 N 102.4 62.5 REMARK 620 4 THR A 246 OG1 109.6 89.4 148.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 514 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 359 OD1 REMARK 620 2 ASP A 359 OD2 42.8 REMARK 620 3 HEZ A 518 O6 95.0 137.7 REMARK 620 4 HOH A 579 O 93.2 68.2 124.2 REMARK 620 5 HOH A 580 O 149.0 107.1 115.1 76.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDS A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEZ A 518 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U3D RELATED DB: PDB DBREF 1U3C A 1 509 UNP Q43125 CRY1_ARATH 1 509 SEQRES 1 A 509 MET SER GLY SER VAL SER GLY CYS GLY SER GLY GLY CYS SEQRES 2 A 509 SER ILE VAL TRP PHE ARG ARG ASP LEU ARG VAL GLU ASP SEQRES 3 A 509 ASN PRO ALA LEU ALA ALA ALA VAL ARG ALA GLY PRO VAL SEQRES 4 A 509 ILE ALA LEU PHE VAL TRP ALA PRO GLU GLU GLU GLY HIS SEQRES 5 A 509 TYR HIS PRO GLY ARG VAL SER ARG TRP TRP LEU LYS ASN SEQRES 6 A 509 SER LEU ALA GLN LEU ASP SER SER LEU ARG SER LEU GLY SEQRES 7 A 509 THR CYS LEU ILE THR LYS ARG SER THR ASP SER VAL ALA SEQRES 8 A 509 SER LEU LEU ASP VAL VAL LYS SER THR GLY ALA SER GLN SEQRES 9 A 509 ILE PHE PHE ASN HIS LEU TYR ASP PRO LEU SER LEU VAL SEQRES 10 A 509 ARG ASP HIS ARG ALA LYS ASP VAL LEU THR ALA GLN GLY SEQRES 11 A 509 ILE ALA VAL ARG SER PHE ASN ALA ASP LEU LEU TYR GLU SEQRES 12 A 509 PRO TRP GLU VAL THR ASP GLU LEU GLY ARG PRO PHE SER SEQRES 13 A 509 MET PHE ALA ALA PHE TRP GLU ARG CYS LEU SER MET PRO SEQRES 14 A 509 TYR ASP PRO GLU SER PRO LEU LEU PRO PRO LYS LYS ILE SEQRES 15 A 509 ILE SER GLY ASP VAL SER LYS CYS VAL ALA ASP PRO LEU SEQRES 16 A 509 VAL PHE GLU ASP ASP SER GLU LYS GLY SER ASN ALA LEU SEQRES 17 A 509 LEU ALA ARG ALA TRP SER PRO GLY TRP SER ASN GLY ASP SEQRES 18 A 509 LYS ALA LEU THR THR PHE ILE ASN GLY PRO LEU LEU GLU SEQRES 19 A 509 TYR SER LYS ASN ARG ARG LYS ALA ASP SER ALA THR THR SEQRES 20 A 509 SER PHE LEU SER PRO HIS LEU HIS PHE GLY GLU VAL SER SEQRES 21 A 509 VAL ARG LYS VAL PHE HIS LEU VAL ARG ILE LYS GLN VAL SEQRES 22 A 509 ALA TRP ALA ASN GLU GLY ASN GLU ALA GLY GLU GLU SER SEQRES 23 A 509 VAL ASN LEU PHE LEU LYS SER ILE GLY LEU ARG GLU TYR SEQRES 24 A 509 SER ARG TYR ILE SER PHE ASN HIS PRO TYR SER HIS GLU SEQRES 25 A 509 ARG PRO LEU LEU GLY HIS LEU LYS PHE PHE PRO TRP ALA SEQRES 26 A 509 VAL ASP GLU ASN TYR PHE LYS ALA TRP ARG GLN GLY ARG SEQRES 27 A 509 THR GLY TYR PRO LEU VAL ASP ALA GLY MET ARG GLU LEU SEQRES 28 A 509 TRP ALA THR GLY TRP LEU HIS ASP ARG ILE ARG VAL VAL SEQRES 29 A 509 VAL SER SER PHE PHE VAL LYS VAL LEU GLN LEU PRO TRP SEQRES 30 A 509 ARG TRP GLY MET LYS TYR PHE TRP ASP THR LEU LEU ASP SEQRES 31 A 509 ALA ASP LEU GLU SER ASP ALA LEU GLY TRP GLN TYR ILE SEQRES 32 A 509 THR GLY THR LEU PRO ASP SER ARG GLU PHE ASP ARG ILE SEQRES 33 A 509 ASP ASN PRO GLN PHE GLU GLY TYR LYS PHE ASP PRO ASN SEQRES 34 A 509 GLY GLU TYR VAL ARG ARG TRP LEU PRO GLU LEU SER ARG SEQRES 35 A 509 LEU PRO THR ASP TRP ILE HIS HIS PRO TRP ASN ALA PRO SEQRES 36 A 509 GLU SER VAL LEU GLN ALA ALA GLY ILE GLU LEU GLY SER SEQRES 37 A 509 ASN TYR PRO LEU PRO ILE VAL GLY LEU ASP GLU ALA LYS SEQRES 38 A 509 ALA ARG LEU HIS GLU ALA LEU SER GLN MET TRP GLN LEU SEQRES 39 A 509 GLU ALA ALA SER ARG ALA ALA ILE GLU ASN GLY SER GLU SEQRES 40 A 509 GLU GLY HET MG A 514 1 HET MG A 515 1 HET MG A 516 1 HET CL A 517 1 HET FAD A 510 53 HET NDS A 512 12 HET HEZ A 518 16 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NDS ETHYL DIMETHYL AMMONIO PROPANE SULFONATE HETNAM HEZ HEXANE-1,6-DIOL FORMUL 2 MG 3(MG 2+) FORMUL 5 CL CL 1- FORMUL 6 FAD C27 H33 N9 O15 P2 FORMUL 7 NDS C7 H17 N O3 S FORMUL 8 HEZ C6 H14 O2 FORMUL 9 HOH *68(H2 O) HELIX 1 1 ASN A 27 GLY A 37 1 11 HELIX 2 2 ALA A 46 GLY A 51 5 6 HELIX 3 3 GLY A 56 LEU A 77 1 22 HELIX 4 4 ASP A 88 GLY A 101 1 14 HELIX 5 5 ASP A 112 ALA A 128 1 17 HELIX 6 6 GLU A 143 VAL A 147 5 5 HELIX 7 7 MET A 157 SER A 167 1 11 HELIX 8 8 ASP A 186 CYS A 190 5 5 HELIX 9 9 ASP A 199 ALA A 207 1 9 HELIX 10 10 LEU A 208 TRP A 213 1 6 HELIX 11 11 GLY A 216 ASN A 229 1 14 HELIX 12 12 GLY A 230 ARG A 239 5 10 HELIX 13 13 LEU A 250 PHE A 256 1 7 HELIX 14 14 SER A 260 GLY A 279 1 20 HELIX 15 15 ASN A 280 ASN A 306 1 27 HELIX 16 16 ASP A 327 GLY A 337 1 11 HELIX 17 17 TYR A 341 GLY A 355 1 15 HELIX 18 18 HIS A 358 VAL A 372 1 15 HELIX 19 19 PRO A 376 LEU A 388 1 13 HELIX 20 20 ASP A 392 GLY A 405 1 14 HELIX 21 21 ASN A 418 ASP A 427 1 10 HELIX 22 22 GLY A 430 LEU A 437 1 8 HELIX 23 23 PRO A 438 SER A 441 5 4 HELIX 24 24 PRO A 444 HIS A 449 1 6 HELIX 25 25 PRO A 455 GLY A 463 1 9 HELIX 26 26 GLY A 476 ALA A 496 1 21 SHEET 1 A 5 LEU A 81 ARG A 85 0 SHEET 2 A 5 VAL A 39 TRP A 45 1 N ALA A 41 O ILE A 82 SHEET 3 A 5 SER A 14 PHE A 18 1 N VAL A 16 O LEU A 42 SHEET 4 A 5 GLN A 104 ASN A 108 1 O PHE A 106 N ILE A 15 SHEET 5 A 5 ALA A 132 PHE A 136 1 O ALA A 132 N ILE A 105 SSBOND 1 CYS A 80 CYS A 190 1555 1555 2.03 LINK O ASN A 238 MG MG A 515 1555 1555 2.20 LINK O LYS A 241 MG MG A 516 1555 1555 3.04 LINK O SER A 244 MG MG A 516 1555 1555 2.53 LINK N SER A 244 MG MG A 516 1555 1555 2.87 LINK OG1 THR A 246 MG MG A 515 1555 1555 2.48 LINK OG1 THR A 246 MG MG A 516 1555 1555 2.44 LINK NE2 HIS A 358 MG MG A 515 1555 1555 3.01 LINK OD1 ASP A 359 MG MG A 514 1555 1555 3.08 LINK OD2 ASP A 359 MG MG A 514 1555 1555 2.96 LINK MG MG A 514 O6 AHEZ A 518 1555 1555 1.99 LINK MG MG A 514 O HOH A 579 1555 1555 3.07 LINK MG MG A 514 O HOH A 580 1555 1555 2.56 SITE 1 AC1 5 ASP A 359 FAD A 510 HEZ A 518 HOH A 579 SITE 2 AC1 5 HOH A 580 SITE 1 AC2 4 ASN A 238 THR A 246 HIS A 358 MG A 516 SITE 1 AC3 4 LYS A 241 SER A 244 THR A 246 MG A 515 SITE 1 AC4 1 HIS A 318 SITE 1 AC5 26 TYR A 235 THR A 247 SER A 248 PHE A 249 SITE 2 AC5 26 LEU A 250 SER A 251 LEU A 254 PHE A 290 SITE 3 AC5 26 SER A 293 ARG A 297 TRP A 356 ASP A 359 SITE 4 AC5 26 ARG A 362 VAL A 363 SER A 366 LEU A 388 SITE 5 AC5 26 ASP A 390 ALA A 391 ASP A 392 SER A 395 SITE 6 AC5 26 ASP A 396 MG A 514 HEZ A 518 HOH A 520 SITE 7 AC5 26 HOH A 521 HOH A 539 SITE 1 AC6 6 ALA A 212 TRP A 213 SER A 214 ALA A 223 SITE 2 AC6 6 PHE A 249 HIS A 253 SITE 1 AC7 6 SER A 395 LEU A 398 GLY A 399 TYR A 402 SITE 2 AC7 6 FAD A 510 MG A 514 CRYST1 169.430 169.430 104.245 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005902 0.003408 0.000000 0.00000 SCALE2 0.000000 0.006815 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009593 0.00000